[BACK]Return to ChangeLog CVS log [TXT] [DIR] Up to [Local Repository] / imach / src

Diff for /imach/src/ChangeLog between versions 1.49 and 1.70

version 1.49, 2022/04/11 16:17:28 version 1.70, 2024/05/12 20:28:58
Line 1 Line 1
 2022-04-11  Nicolas Brouard   <brouard@ined.fr>  2024-05-12  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed          * imach.c Version 0.99s5 In fact, the covariance of total life
           expectancy e.. with a partial life expectancy e.j is high,
 2022-04-05  Brouard Nicolas  <brouard@ined.fr>          therefore the complete matrix of variance covariance has to be
           included in the formula of the standard error of the proportion of
         * imach.c (Module): Fixed covariates (dummy or quantitative)          total life expectancy spent in a specific state:
         with missing values have never been allowed but are ERRORS and          var(X/Y)=mu_x^2/mu_y^2*(sigma_x^2/mu_x^2 -2
         program quits. Standard deviations of fixed covariates were          sigma_xy/mu_x/mu_y+sigma^2/mu_y^2).  Also an error with mle=-3
         wrongly computed. Mean and standard deviations of time varying          made the program core dump. It is fixed in this version.
         covariates are still not computed.  
   2024-04-30  Nicolas Brouard   <brouard@ined.fr>
 2022-03-17  Brouard Nicolas  <brouard@ined.fr>  
           * (Module): In version 0.99s4, we incorporated the calculation of
         * 99r25 Improvements in fixing discrepancies between covariates          the std error of the proportion of total life expectancy spent in
         missing in result line but in model.          a specific state Var(e.j/e..) using the formula of Var(X/Y)
           depending only of the variances of X and Y and expectancies.
 *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>  
         * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett  2024-04-24  Nicolas Brouard   <brouard@ined.fr>
   
 *2021-03-08  Nicolas Brouard   <brouard@ined.fr>          * (Module): This version comes late after having tested
           successfully the praxis C version of Buckhardt.  But Buckardt's
         * ./ (Module): Fixed bug on result:          version was difficult to read and Gegenfurtner's version had a few
           typos which made its results less reliable than Buckhardt's
 *2021-02-20  Nicolas Brouard   <brouard@ined.fr>          results.  The most important work consisted in retyping the Brent
           original PRAXIS program written in Algol W (published with errors,
         * imach.c (Module): Fix bug on quitting after result lines!          ommitting the transposition of matrix V before its QR reduction
         (Module): Version 0.99r21          from Golub. I used the recent "awe" compiler from Gkynn Webster.
           The awe library had errors, for example in arc tangent function
 2021-02-12  Nicolas Brouard   <brouard@ined.fr>          which have been fixed.
   
         * imach.c (Module): The use of a Windows BOM (huge) file is now an error          The main objective was to get identical results with the three
           versions: (1) Algol W, (2) Buckhardt'C version as well (3)
           Gegenfürtner C versions on the various test functions published by
 2021-02-11  Nicolas  Brouard   <brouard@ined.fr>          Brent in 1973 in Algol W.
   
         *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.          Also, in order to compare them, the random function had to produce
           the same sequence for the 3 softwares. The random function used in
 2020-02-22  Brouard Nicolas  <brouard@ined.fr>          imach corresponds to original Brent's random function written in
           Algol W.  Other point, in Algol W, the arrays of dimension n are
         *  (Module): imach.c Update mle=-3 (for computing Life expectancy          'normal' mathematical arrays starting from 1 to n. But this is a
         and life table from the data without any state)          real issue in C where, by default, arrays are starting from 0 to
           n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
 2019-05-20  Brouard Nicolas  <brouard@ined.fr>          seen that authors while trying to mimick original Brent Algol W
           code are hesitating by changing either a loop originally from 1 to
         * version.h: Summary: version 0.99.r19          n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
           shifting the index from original X(I) in Algol W to x[i-1] in C.
         * imach.c: Summary: Projection syntax simplified          But as IMaCh is using, since the beginning, the Numerical Recipes
         We can now start projections, forward or backward, from the mean date          functions vector or matrix, I changed Geggenfürtner code to mimick
         of inteviews up to or down to a number of years of projection:          the original Algol W arrays. Thus the X(I) is translated in C as
         prevforecast=1 yearsfproj=15.3 mobil_average=0          x[i] which minimizes the errors. The Golub QR algorithm was
         or          published in Algol with overflow errors which were reproduced in
         prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0          Brent's Algol W code. Buckhardt code fixed these errors which are
         or          much more problematic in C than in Algol W.  Thus Buckhardt code
         prevbackcast=1 yearsbproj=12.3 mobil_average=1          seems very safe, but i haven't chosen it for IMaCh because the C
         or          style is horrible and almost unreadable compared to Gegenfürtner
         prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1          CO code which is very close to Brent's original. Also what makes
           Buckhardt code more difficult to read is, instead of passing the
 2019-05-18  Brouard Nicolas  <brouard@ined.fr>          minimum of parameters in the functions calls, as it is in Algol
           Brent's code or Gegenfürtner's code, the list of parameters is
         * imach.c: Summary: doxygen tex bug          high. For example, the flin function LONG REAL PROCEDURE FLIN
           (LONG REAL VALUE L) has only one parameter in Algol W, the
 2019-05-16  Brouard Nicolas  <brouard@ined.fr>          Gegenfürtner flin function had two parameters: static double
           flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
         * imach.c: Summary: There was some wrong lines added          function has 14 parameters which makes the code unreadable and
           useless. Gegenfürtner used a lot of static variables or functions
 2019-05-09  Brouard Nicolas  <brouard@ined.fr>          which I tried to minimize. Also in Gegefürtner, array dimensions
           were fixed to N. In my adaptation the flin is static double
         * Makefile, imach.c: *** empty log message ***          flin(double l, int j) and the parameter used are global variables.
   
         * ChangeLog: Summary: C=  2023-06-14  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Some updates          * imach.c (Module): Testing if conjugate gradient could be quicker
           when lot of variables POWELLORIGINCONJUGATE
         * imach.c: Summary: Before ncovmax  
   2023-05-23  Nicolas Brouard   <brouard@ined.fr>
         * version.h: *** empty log message ***  
           * imach.c (Module): Fixed PROB_r 
         * imach.c: Summary: 0.99r18 unlimited number of individuals  
         The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.  2023-05-22  Nicolas Brouard   <brouard@ined.fr>
   
 2018-12-13  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): In the ILK....txt file, the number of columns
           before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
         * imach.c: Summary: Bug for young ages (<-30) will be in r17  
   2023-05-08  Nicolas Brouard   <brouard@ined.fr>
 2018-12-05  Brouard Nicolas  <brouard@ined.fr>  
           *  (Module): Error V0 when result:. and model 1+age+V1: fixed
         * Makefile: Summary: 0.99r16  
   2023-04-29  Nicolas Brouard  <brouard@ined.fr>
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Inverting the model equation and fixingg bugs
         * imach.c: Summary: Some bugs fixed          in the drawings
           "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  
   2023-04-24  Nicolas Brouard  <brouard@ined.fr>
         * imach.c:  Summary: Bug for young ages (<-30) will be in r17  
           * imach.c (Module): some bugs in printinggnuplot 
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-19  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Some bugs fixed  
           * imach.c (Module): Version 0.99r42 needed a newer version of
 2018-05-01  Brouard Nicolas  <brouard@ined.fr>          Gnuplot. But newer version 0.99r43 should run with the Gnuplot
           version 5.0 or 5.1 distributed with IMaCh.
         * imach.c:  
         Summary: Bug fixed by providing frequencies only for non missing covariates  2022-09-18  Nicolas Brouard   <brouard@ined.fr>
   
 2018-04-27  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Fixing when a state in the data is 0 or higher
           than lstate+ndeath. Fixing the plot of contribution to Likelihood.
         * imach.c: Summary: some minor bugs  
   2022-09-16  Nicolas Brouard   <brouard@ined.fr>
 2018-04-21  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you  Feinuo
         * README.txt: *** empty log message ***  
   2022-09-14  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Some bugs fixed, valgrind tested  
           * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
 2018-04-20  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-14  Nicolas Brouard   <brouard@ined.fr>
         * Makefile, README.txt, setup.iss: Summary: imach 0.99r16  
           * imach.c (Module): Version 0.99r39 with colored dummy covariates
         * imach.c:          (fixed or time varying), using new last columns of
         Summary: Computing mean and stdeviation of fixed quantitative variables          ILK_parameter.txt file.
   
 2018-04-19  Brouard Nicolas  <brouard@ined.fr>  2022-09-11  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Some minor bugs fixed          * imach.c (Module): Adding timevarying products of any kinds,
           should work before shifting cotvar from ncovcol+nqv columns in
         * version.h: *** empty log message ***          order to have a correspondance between the column of cotvar and
           the id of column.
 2018-02-27  Brouard Nicolas  <brouard@ined.fr>          (Module): Some cleaning and adding covariates in ILK.txt
   
         * imach.c: *** empty log message ***  2022-09-09  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Adding second argument for quitting          * imach.c (Module): Many improvements for fixing products of fixed
           timevarying as well as fixed * fixed, and test with quantitative
 2018-02-21  Brouard Nicolas  <brouard@ined.fr>          covariate.
   
         * Makefile, README.txt, imach.c: Summary: 0.99r15  2022-09-04  Nicolas Brouard   <brouard@ined.fr>
         New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c  
           * imach.c (Module): Now the easy runs i.e. without result or
 2017-07-20  Brouard Nicolas  <brouard@ined.fr>          model=1+age only did not work. The defautl combination should be 1
           and not 0 because everything hasn't been tranformed yet.
         * imach.c: Summary: temporary working  
   2022-09-02  Nicolas Brouard   <brouard@ined.fr>
 2017-07-19  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Version 0.99r35 because it outputs same results with
         * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)          1+age+V1+V1*age for females and 1+age for females only
           (education=1 noweight)
 2017-07-17  Brouard Nicolas  <brouard@ined.fr>  
   2022-08-31  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: BOM files can be read now  
           * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
 2017-06-30  Brouard Nicolas  <brouard@ined.fr>  
   2022-08-21  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Graphs improvements  
           * imach.c (Module): Version 0.99r33 A lot of changes in
         * imach.c: Summary: Saito's color          reassigning covariates: my first idea was that people will always
           use the first covariate V1 into the model but in fact they are
 2017-06-29  Brouard Nicolas  <brouard@ined.fr>          producing data with many covariates and can use an equation model
           with some of the covariate; it means that in a model V2+V3 instead
         * imach.c: Summary: Version 0.99r14          of codtabm(k,Tvaraff[j]) which calculates for combination k, for
           three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
 2017-06-27  Brouard Nicolas  <brouard@ined.fr>          the equation model is restricted to two variables only (V2, V3)
           and the combination for V2 should be codtabm(k,1) instead of
         * imach.c: Summary: More documentation on projections          (codtabm(k,2), and the code should be
           codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
         * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)          made. All of these should be simplified once a day like we did in
           hpxij() for example by using precov[nres] which is computed in
         * imach.c: Summary: Some bug with rint          decoderesult for each nres of each resultline. Loop should be done
           on the equation model globally by distinguishing only product with
 2017-05-24  Brouard Nicolas  <brouard@ined.fr>          age (which are changing with age) and no more on type of
           covariates, single dummies, single covariates. 
         * imach.c: *** empty log message ***  
   2022-08-06  Nicolas Brouard   <brouard@ined.fr>
 2017-05-23  Brouard Nicolas  <brouard@ined.fr>  
           *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
         * imach.c: Summary: Code into subroutine, cleanings  
   2022-08-03  Nicolas Brouard   <brouard@ined.fr>
 2017-05-18  Brouard Nicolas  <brouard@ined.fr>  
           *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
         * imach.c:  
         Summary: backprojection and confidence intervals of backprevalence  2022-07-25  Brouard Nicolas  <brouard@brouard.name>
   
 2017-05-13  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Error cptcovn instead of nsd in bmij (was
           coredumped, revealed by Feiuno, thank you.
         * imach.c: Summary: temporary save for backprojection  
   2022-07-23  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)  
           * r29 W and not sqrt(Wald)
 2017-04-26  Brouard Nicolas  <brouard@ined.fr>  
   2022-07-22  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: imach 0.99r13 Some bugs fixed  
           *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
         * imach.c: Summary: Labels in graphs  
   2022-06-02  Brouard Nicolas  <brouard@brouard.name>
 2017-04-24  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Adding the Wald tests from the log to the main
         * imach.c: Summary: to save          htm for better display of the maximum likelihood estimators.
   
 2017-04-18  Brouard Nicolas  <brouard@ined.fr>  2022-05-30  Brouard Nicolas  <brouard@brouard.name>
   
         * imach.c: *** empty log message ***          * imach.c: With products of covariates (age or dummies or
           quantitatives), estimates of parameters were good but when
 2017-04-05  Brouard Nicolas  <brouard@ined.fr>          estimating variances the positions of newly created covariates
           were wrongly assigned and results were wrong. Thank to Feinua_Sun!
         * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1  
   2022-05-24  Nicolas Brouard   <brouard@ined.fr>
 2017-04-04  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Some attempts to find a bug of wrong estimates
         * imach.c: Summary: Gnuplot indexations fixed (humm)          of confidencce intervals with product in the equation modelC
   
         * imach.c:  2022-05-15  Nicolas Brouard   <brouard@ined.fr>
         Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3  
           * imach.c (Module):  Some minor improvements
 2017-04-03  Brouard Nicolas  <brouard@ined.fr>  
   2022-04-13  Brouard Nicolas  <brouard@brouard.name>
         * imach.c: Summary: Version 0.99r12  
         Some cleanings, conformed with updated documentation.          * imach.c (Module): Adding link to text data files
   
 2017-03-30  Brouard Nicolas  <brouard@ined.fr>  2022-04-11  Nicolas Brouard   <brouard@ined.fr>
   
         * version.h: *** empty log message ***          * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
   
         * version.h: Summary:0.99r11  2022-04-05  Brouard Nicolas  <brouard@ined.fr>
   
 2017-03-29  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Fixed covariates (dummy or quantitative)
           with missing values have never been allowed but are ERRORS and
         * imach.c: Summary: Temp          program quits. Standard deviations of fixed covariates were
           wrongly computed. Mean and standard deviations of time varying
 2017-03-27  Brouard Nicolas  <brouard@ined.fr>          covariates are still not computed.
   
         * imach.c: Summary: Temporary  2022-03-17  Brouard Nicolas  <brouard@ined.fr>
   
 2017-03-08  Brouard Nicolas  <brouard@ined.fr>          * 99r25 Improvements in fixing discrepancies between covariates
           missing in result line but in model. 
         * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed  
   *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Fixing data parameter line          * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
   
 2016-12-15  Brouard Nicolas  <brouard@ined.fr>  *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: 0.99 in progress          * ./ (Module): Fixed bug on result:
   
 2016-09-15  Brouard Nicolas  <brouard@ined.fr>  *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c (Module): Fix bug on quitting after result lines!
           (Module): Version 0.99r21
         * imach.c: Summary: not working  
   2021-02-12  Nicolas Brouard   <brouard@ined.fr>
 2016-09-08  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): The use of a Windows BOM (huge) file is now an error
         * imach.c: Summary: continue  
   
 2016-09-07  Brouard Nicolas  <brouard@ined.fr>  2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Starting values from frequencies          *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
   
         * imach.c: *** empty log message ***  2020-02-22  Brouard Nicolas  <brouard@ined.fr>
   
 2016-09-02  Brouard Nicolas  <brouard@ined.fr>          *  (Module): imach.c Update mle=-3 (for computing Life expectancy
           and life table from the data without any state)
         * imach.c: *** empty log message ***  
   2019-05-20  Brouard Nicolas  <brouard@ined.fr>
 2016-08-30  Brouard Nicolas  <brouard@ined.fr>  
           * version.h: Summary: version 0.99.r19
         * imach.c: Summary: Fixing a lots  
           * imach.c: Summary: Projection syntax simplified
 2016-08-29  Brouard Nicolas  <brouard@ined.fr>          We can now start projections, forward or backward, from the mean date
           of inteviews up to or down to a number of years of projection:
         * imach.c: Summary: gnuplot problem in Back projection to fix          prevforecast=1 yearsfproj=15.3 mobil_average=0
           or
         * imach.c: Summary: Better          prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
           or
 2016-08-26  Brouard Nicolas  <brouard@ined.fr>          prevbackcast=1 yearsbproj=12.3 mobil_average=1
           or
         * imach.c:          prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
         Summary: Improvement in Powell output in order to copy and paste  
   2019-05-18  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Starting tests of 0.99  
           * imach.c: Summary: doxygen tex bug
         * imach.c: Summary: to valgrind  
   2019-05-16  Brouard Nicolas  <brouard@ined.fr>
 2016-08-25  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: There was some wrong lines added
         * imach.c: *** empty log message ***  
   2019-05-09  Brouard Nicolas  <brouard@ined.fr>
 2016-08-23  Brouard Nicolas  <brouard@ined.fr>  
           * Makefile, imach.c: *** empty log message ***
         * imach.c: *** empty log message ***  
           * ChangeLog: Summary: C=
         * imach.c: Summary: not working  
           * imach.c: Summary: Some updates
 2016-08-22  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Before ncovmax
         * imach.c: Summary: not working  
           * version.h: *** empty log message ***
         * imach.c: Summary: Not working  
           * imach.c: Summary: 0.99r18 unlimited number of individuals
 2016-07-23  Brouard Nicolas  <brouard@ined.fr>          The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
   
         * imach.c: Summary: Completing for func too  2018-12-13  Brouard Nicolas  <brouard@ined.fr>
   
 2016-07-22  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Bug for young ages (<-30) will be in r17
   
         * imach.c: Summary: Fixing some arrays, still debugging  2018-12-05  Brouard Nicolas  <brouard@ined.fr>
   
 2016-07-21  Brouard Nicolas  <brouard@ined.fr>          * Makefile: Summary: 0.99r16
   
         * imach.c:  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         Summary: 0.99 working (more or less) for Asian Workshop on multitate methods  
           * imach.c: Summary: Some bugs fixed
 2016-07-12  Brouard Nicolas  <brouard@ined.fr>  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: temp  
           * imach.c:  Summary: Bug for young ages (<-30) will be in r17
         * imach.c: Summary: saving but not running  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
 2016-07-01  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Some bugs fixed
         * imach.c: Summary: Fixes  
   2018-05-01  Brouard Nicolas  <brouard@ined.fr>
 2016-02-19  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c:
         * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7          Summary: Bug fixed by providing frequencies only for non missing covariates
   
         * setup.iss, Makefile, version.h: *** empty log message ***  2018-04-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: temporary          * imach.c: Summary: some minor bugs
   
 2016-02-17  Brouard Nicolas  <brouard@ined.fr>  2018-04-21  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Probably last 0.98 stable version 0.98r6          * README.txt: *** empty log message ***
   
 2016-02-16  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Some bugs fixed, valgrind tested
   
         * imach.c: Summary: minor bug  2018-04-20  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.99r2          * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
   
 2016-02-15  Brouard Nicolas  <brouard@ined.fr>          * imach.c:
           Summary: Computing mean and stdeviation of fixed quantitative variables
         * imach.c: *** empty log message ***  
   2018-04-19  Brouard Nicolas  <brouard@ined.fr>
 2016-02-12  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Some minor bugs fixed
         * imach.c: Summary: 0.99 Back projections  
           * version.h: *** empty log message ***
 2015-12-23  Brouard Nicolas  <brouard@ined.fr>  
   2018-02-27  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Experimental backcast  
           * imach.c: *** empty log message ***
 2015-12-18  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Adding second argument for quitting
         * imach.c: Summary: 0.98r4 Warning and status=-2  
   2018-02-21  Brouard Nicolas  <brouard@ined.fr>
         Version 0.98r4 is now:  
          - displaying an error when status is -1, date of interview unknown and date of death known;          * Makefile, README.txt, imach.c: Summary: 0.99r15
          - permitting a status -2 when the vital status is unknown at a known date of right truncation.          New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
         Older changes concerning s=-2, dating from 2005 have been supersed.  
   2017-07-20  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * imach.c: Summary: temporary working
 2015-12-16  Brouard Nicolas  <brouard@ined.fr>  
   2017-07-19  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
         * imach.c: Summary: 0.98r4 working  
   2017-07-17  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: Summary: linuxrpm added  
           * imach.c: Summary: BOM files can be read now
         * Makefile: *** empty log message ***  
   2017-06-30  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: temporary not working  
           * imach.c: Summary: Graphs improvements
 2015-12-11  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Saito's color
         * imach.c: Summary: 0.98r4  
   2017-06-29  Brouard Nicolas  <brouard@ined.fr>
 2015-12-08  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Version 0.99r14
         * Makefile: *** empty log message ***  
   2017-06-27  Brouard Nicolas  <brouard@ined.fr>
 2015-11-21  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: More documentation on projections
         * Makefile:  
         Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more          * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
   
         * imach.c: Summary: minor typo          * imach.c: Summary: Some bug with rint
   
         * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional  2017-05-24  Brouard Nicolas  <brouard@ined.fr>
   
         Author: Nicolas Brouard          * imach.c: *** empty log message ***
   
 2015-11-18  Brouard Nicolas  <brouard@ined.fr>  2017-05-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Start working on projected prevalences          * imach.c: Summary: Code into subroutine, cleanings
   
 2015-11-17  Brouard Nicolas  <brouard@ined.fr>  2017-05-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Adding ftolpl parameter          * imach.c:
         Author: N Brouard          Summary: backprojection and confidence intervals of backprevalence
   
         We had difficulties to get smoothed confidence intervals. It was due  2017-05-13  Brouard Nicolas  <brouard@ined.fr>
         to the period prevalence which wasn't computed accurately. The inner  
         parameter ftolpl is now an outer parameter of the .imach parameter          * imach.c: Summary: temporary save for backprojection
         file after estepm. If ftolpl is small 1.e-4 and estepm too,  
         computation are long.          * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
   
         * version.h: *** empty log message ***  2017-04-26  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: temporary          * imach.c: Summary: imach 0.99r13 Some bugs fixed
   
 2015-10-27  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Labels in graphs
   
         * Makefile: *** empty log message ***  2017-04-24  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss.in: Summary: some new subdirs          * imach.c: Summary: to save
   
         * imach.c: *** empty log message ***  2017-04-18  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss.in:          * imach.c: *** empty log message ***
         Summary: Adding gnuplot 5.1 with bin and etc for pango fonts  
   2017-04-05  Brouard Nicolas  <brouard@ined.fr>
 2015-10-24  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
         * imach.c: *** empty log message ***  
   2017-04-04  Brouard Nicolas  <brouard@ined.fr>
 2015-10-23  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Gnuplot indexations fixed (humm)
         * imach.c:  
         Summary: 0.98r3 some clarification for graphs on likelihood contributions          * imach.c:
           Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
 2015-10-01  Brouard Nicolas  <brouard@ined.fr>  
   2017-04-03  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Some new graphs of contribution to likelihood  
           * imach.c: Summary: Version 0.99r12
 2015-09-30  Brouard Nicolas  <brouard@ined.fr>          Some cleanings, conformed with updated documentation.
   
         * Makefile:  2017-03-30  Brouard Nicolas  <brouard@ined.fr>
         Summary: Version read from version.h, itself read with cmake  
           * version.h: *** empty log message ***
         * imach.c: Summary: looking at better estimation of the hessian  
           * version.h: Summary:0.99r11
         Also a better criteria for convergence to the period prevalence And  
         therefore adding the number of years needed to converge. (The  2017-03-29  Brouard Nicolas  <brouard@ined.fr>
         prevalence in any alive state shold sum to one  
           * imach.c: Summary: Temp
         * Makefile: *** empty log message ***  
   2017-03-27  Brouard Nicolas  <brouard@ined.fr>
 2015-09-22  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Temporary
         * imach.c:  
         Summary: Adding some overall graph on contribution to likelihood. Might change  2017-03-08  Brouard Nicolas  <brouard@ined.fr>
   
 2015-09-15  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
   
         * Makefile: *** empty log message ***          * imach.c: Summary: Fixing data parameter line
   
         * imach.c: Summary: 0.98r0  2016-12-15  Brouard Nicolas  <brouard@ined.fr>
   
         - Some new graphs like survival functions          * imach.c: Summary: 0.99 in progress
         - Some bugs fixed like model=1+age+V2.  
   2016-09-15  Brouard Nicolas  <brouard@ined.fr>
         * ChangeLog, Makefile: Summary: 0.98r0  
           * imach.c: *** empty log message ***
         * CMakeLists.txt: Summary: Some tests for setup.iss  
           * imach.c: Summary: not working
 2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  
   2016-09-08  Brouard Nicolas  <brouard@ined.fr>
         *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc  
           * imach.c: Summary: continue
 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>  
   2016-09-07  Brouard Nicolas  <brouard@ined.fr>
         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.  
           * imach.c: Summary: Starting values from frequencies
 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  
           * imach.c: *** empty log message ***
         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)  
   2016-09-02  Brouard Nicolas  <brouard@ined.fr>
 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>  
           * imach.c: *** empty log message ***
         * imach.c (Module): Merging 1.61 to 1.162  
   2016-08-30  Brouard Nicolas  <brouard@ined.fr>
 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>  
           * imach.c: Summary: Fixing a lots
         * prevlim.h (Module):  
   2016-08-29  Brouard Nicolas  <brouard@ined.fr>
 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>  
           * imach.c: Summary: gnuplot problem in Back projection to fix
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...  
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.          * imach.c: Summary: Better
   
 2010-04-29  brouard  <brouard@ined.fr>  2016-08-26  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Checking covariates for more complex models          * imach.c:
         than V1+V2. A lot of change to be done. Unstable.          Summary: Improvement in Powell output in order to copy and paste
   
 2010-04-26  brouard  <brouard@ined.fr>          * imach.c: Summary: Starting tests of 0.99
   
         * imach.c (Module): merging some libgsl code. Fixing computation          * imach.c: Summary: to valgrind
         of likelione (using inter/intrapolation if mle = 0) in order to  
         get same likelihood as if mle=1.  2016-08-25  Brouard Nicolas  <brouard@ined.fr>
         Some cleaning of code and comments added.  
           * imach.c: *** empty log message ***
 2009-10-29  brouard  <brouard@ined.fr>  
   2016-08-23  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.  
           * imach.c: *** empty log message ***
 2006-06-30  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: not working
         * imach.c (Module): Clarifications on computing e.j  
   2016-08-22  Brouard Nicolas  <brouard@ined.fr>
 2006-04-28  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: not working
         * imach.c (Module): Yes the sum of survivors was wrong since  
         imach-114 because nhstepm was no more computed in the age          * imach.c: Summary: Not working
         loop. Now we define nhstepma in the age loop.  
         (Module): In order to speed up (in case of numerous covariates) we  2016-07-23  Brouard Nicolas  <brouard@ined.fr>
         compute health expectancies (without variances) in a first step  
         and then all the health expectancies with variances or standard          * imach.c: Summary: Completing for func too
         deviation (needs data from the Hessian matrices) which slows the  
         computation.  2016-07-22  Brouard Nicolas  <brouard@ined.fr>
         In the future we should be able to stop the program is only health  
         expectancies and graph are needed without standard deviations.          * imach.c: Summary: Fixing some arrays, still debugging
   
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  2016-07-21  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.iss (Module):          * imach.c:
           Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
         * imach.c (Module): bugs in evsi + population file added in htm output file  
   2016-07-12  Brouard Nicolas  <brouard@ined.fr>
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * imach.c: Summary: temp
         * imach.c (Module):  
           * imach.c: Summary: saving but not running
 2006-03-20  Brouard Nicolas  <brouard@localhost>  
   2016-07-01  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): <title> changed, corresponds to .htm file  
         name. <head> headers where missing.          * imach.c: Summary: Fixes
   
         * Makefile (Module): 0.98g  2016-02-19  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Weights can have a decimal point as for          * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
         English (a comma might work with a correct LC_NUMERIC environment,  
         otherwise the weight is truncated).          * setup.iss, Makefile, version.h: *** empty log message ***
         Modification of warning when the covariates values are not 0 or  
         1.          * imach.c: Summary: temporary
         Version 0.98g  
   2016-02-17  Brouard Nicolas  <brouard@ined.fr>
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * imach.c: Summary: Probably last 0.98 stable version 0.98r6
         * imach.c (Module): Comments concerning covariates added  
   2016-02-16  Brouard Nicolas  <brouard@ined.fr>
         * noreg-setup.iss (Module): Version 0.98f  
           * imach.c: Summary: minor bug
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup  
           * imach.c: Summary: 0.99r2
         * imach.c (Module): refinements in the computation of lli if  
         status=-2 in order to have more reliable computation if stepm is  2016-02-15  Brouard Nicolas  <brouard@ined.fr>
         not 1 month. Version 0.98f  
           * imach.c: *** empty log message ***
 2006-03-15  Brouard Nicolas  <brouard@localhost>  
   2016-02-12  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Bug if status = -2, the loglikelihood was  
         computed as likelihood omitting the logarithm. Version O.98e          * imach.c: Summary: 0.99 Back projections
   
 2006-03-14  Brouard Nicolas  <brouard@localhost>  2015-12-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): varevsij Comments added explaining the second          * imach.c: Summary: Experimental backcast
         table of variances if popbased=1 .  
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.  2015-12-18  Brouard Nicolas  <brouard@ined.fr>
         (Module): Function pstamp added  
         (Module): Version 0.98d          * imach.c: Summary: 0.98r4 Warning and status=-2
   
 2006-03-06  Brouard Nicolas  <brouard@localhost>          Version 0.98r4 is now:
            - displaying an error when status is -1, date of interview unknown and date of death known;
         * imach.c (Module): Variance-covariance wrong links and           - permitting a status -2 when the vital status is unknown at a known date of right truncation.
         varian-covariance of ej. is needed (Saito).          Older changes concerning s=-2, dating from 2005 have been supersed.
   
 2006-02-27  Brouard Nicolas  <brouard@localhost>          * Makefile: *** empty log message ***
   
         * imach.c (Module): One freematrix added in mlikeli!  2015-12-16  Brouard Nicolas  <brouard@ined.fr>
   
 2006-02-26  Brouard Nicolas  <brouard@localhost>          * Makefile: *** empty log message ***
   
         * imach.c (Module): Some improvements in processing parameter          * imach.c: Summary: 0.98r4 working
         filename with strsep.  
           * Makefile: Summary: linuxrpm added
 2006-02-24  Brouard Nicolas  <brouard@localhost>  
           * Makefile: *** empty log message ***
         * imach.c (Module): Memory leaks checks with valgrind and:  
         datafile was not closed, some imatrix were not freed and on matrix          * imach.c: Summary: temporary not working
         allocation too.  
   2015-12-11  Brouard Nicolas  <brouard@ined.fr>
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * imach.c: Summary: 0.98r4
         * strsep.c (Module): Inclusion because not in mingw32!!!  
   2015-12-08  Brouard Nicolas  <brouard@ined.fr>
         * setup.iss.in (Module): IMACHSETUPVERSION added  
           * Makefile: *** empty log message ***
         * noreg-setup.iss (Module): added to cvs tree  
   2015-11-21  Brouard Nicolas  <brouard@ined.fr>
         * Makefile (Module): IMACHSETUPVERSION added  
           * Makefile:
 2006-01-30  BROUARD Nicolas  <brouard@localhost>          Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
   
         * Makefile (Module, Module): Latest Makefile          * imach.c: Summary: minor typo
   
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe          * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
   
 2006-01-27  BROUARD Nicolas  <brouard@localhost>          Author: Nicolas Brouard
   
         * noreg-setup.iss (Module): ADDED  2015-11-18  Brouard Nicolas  <brouard@ined.fr>
   
 2006-01-24  BROUARD Nicolas  <brouard@localhost>          * imach.c: Summary: Start working on projected prevalences
   
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.  2015-11-17  Brouard Nicolas  <brouard@ined.fr>
   
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>          * imach.c: Summary: Adding ftolpl parameter
           Author: N Brouard
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg  
           We had difficulties to get smoothed confidence intervals. It was due
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X          to the period prevalence which wasn't computed accurately. The inner
           parameter ftolpl is now an outer parameter of the .imach parameter
 2005-09-30    <lievre@PC_00595>          file after estepm. If ftolpl is small 1.e-4 and estepm too,
           computation are long.
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.  
         (Module): If the status is missing at the last wave but we know          * version.h: *** empty log message ***
         that the person is alive, then we can code his/her status as -2  
         (instead of missing=-1 in earlier versions) and his/her          * imach.c: Summary: temporary
         contributions to the likelihood is 1 - Prob of dying from last  
         health status (= 1-p13= p11+p12 in the easiest case of somebody in  2015-10-27  Brouard Nicolas  <brouard@ined.fr>
         the healthy state at last known wave). Version is 0.98  
           * Makefile: *** empty log message ***
 2004-05-20  Brouard Nicolas  <brouard@localhost>  
           * setup.iss.in: Summary: some new subdirs
         * imach.c (Repository):  
         Agnes added a direct estimation of mortality (without the need of          * imach.c: *** empty log message ***
         computing period prevalence and differential mortality). Thus here  
         is version 0.97a which has been distributed to some people at          * setup.iss.in:
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of          Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
         mortality using covariates is not done today. Estimating direct  
         mortality is a very different process because it doesn't need  2015-10-24  Brouard Nicolas  <brouard@ined.fr>
         interpolation because it is easy to get the lx from the force of  
         the mortality mux in the simplest case as for a Gompertz (log mux          * imach.c: *** empty log message ***
         = a + b*x . But we have been able to incorporate the new code  
         within former imach program (0.96d) without deteriorating too much  2015-10-23  Brouard Nicolas  <brouard@ined.fr>
         the understanding of the program.  
           * imach.c:
 2003-06-25    <brouard@BROUARD>          Summary: 0.98r3 some clarification for graphs on likelihood contributions
   
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't  2015-10-01  Brouard Nicolas  <brouard@ined.fr>
         exist so I changed back to asctime which exists.  
         (Module): Version 0.96b          * imach.c: Summary: Some new graphs of contribution to likelihood
   
 2003-06-24    <brouard@BROUARD>  2015-09-30  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Some bugs corrected for windows. Also, when          * Makefile:
         mle=-1 a template is output in file "or"mypar.txt with the design          Summary: Version read from version.h, itself read with cmake
         of the covariance matrix to be input.  
           * imach.c: Summary: looking at better estimation of the hessian
 2003-06-25  Brouard Nicolas  <brouard@homebrou>  
           Also a better criteria for convergence to the period prevalence And
         * imach.c (Repository): Duplicated warning errors corrected.          therefore adding the number of years needed to converge. (The
         (Repository): Elapsed time after each iteration is now output. It          prevalence in any alive state shold sum to one
         helps to forecast when convergence will be reached. Elapsed time  
         is stamped in powell.  We created a new html file for the graphs          * Makefile: *** empty log message ***
         concerning matrix of covariance. It has extension -cov.htm.  
   2015-09-22  Brouard Nicolas  <brouard@ined.fr>
 2003-06-23  Brouard Nicolas  <brouard@homebrou>  
           * imach.c:
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.          Summary: Adding some overall graph on contribution to likelihood. Might change
   
 2003-06-18  Brouard Nicolas  <brouard@homebrou>  2015-09-15  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96          * Makefile: *** empty log message ***
   
 2003-06-17  Brouard Nicolas  <brouard@homebrou>          * imach.c: Summary: 0.98r0
   
           - Some new graphs like survival functions
         * imach.c (Repository): Check when date of death was earlier that          - Some bugs fixed like model=1+age+V2.
         current date of interview. It may happen when the death was just  
         prior to the death. In this case, dh was negative and likelihood          * ChangeLog, Makefile: Summary: 0.98r0
         was wrong (infinity). We still send an "Error" but patch by  
         assuming that the date of death was just one stepm after the          * CMakeLists.txt: Summary: Some tests for setup.iss
         interview.  
         (Repository): Because some people have very long ID (first column)  2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         we changed int to long in num[] and we added a new lvector for  
         memory allocation. But we also truncated to 8 characters (left          *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
         truncation)  
   2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
         (Repository): No more line truncation errors.  
           *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
 2003-06-14  Brouard Nicolas  <brouard@homebrou>  
   2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         * imach.c (Repository): Add of a routine likelione (likelihood  
         only once) which prints on a text file          *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
         (ilk) the contributions to the likelihood for each  
         individual/wave.  2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
   
 2003-06-13  Brouard Nicolas  <brouard@homebrou>          * imach.c (Module): Merging 1.61 to 1.162
         * imach.c (Repository): Replace "freqsummary" at a correct  
         place. It differs from routine "prevalence" which may be called  2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
         many times. Probs is memory consuming and must be used with  
         parcimony.          * prevlim.h (Module): 
   
 2003-06-17    <brouard@BROUARD>  2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
   
         * timeval.h (Module): Added included file to make use of          * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
         gettimeofday working on win32 with cygwin.          (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
   
 2003-05-16  Brouard Nicolas  <brouard@brouard>  2010-04-29  brouard  <brouard@ined.fr>
         * imach.c (Module): Insert of a warning if the delay between two  
         waves is negative.          * imach.c (Module): Checking covariates for more complex models
           than V1+V2. A lot of change to be done. Unstable.
         * imach.c (Module):  
   2010-04-26  brouard  <brouard@ined.fr>
 2003-05-03    <brouard@BROUARD>  
           * imach.c (Module): merging some libgsl code. Fixing computation
         * imach.c: Some cleaning          of likelione (using inter/intrapolation if mle = 0) in order to
           get same likelihood as if mle=1.
 2003-03-28    <brouard@BROUARD>          Some cleaning of code and comments added.
         * imach.c (Module): In version up to 0.92 likelihood was computed  
         as if date of death was unknown. Death was treated as any other  2009-10-29  brouard  <brouard@ined.fr>
         health state: the date of the interview describes the actual state  
         and not the date of a change in health state. The former idea was          * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
         to consider that at each interview the state was recorded  
         (healthy, disable or death) and IMaCh was corrected; but when we  2006-06-30  Brouard Nicolas  <brouard@localhost>
         introduced the exact date of death then we should have modified  
         the contribution of an exact death to the likelihood. This new          * imach.c (Module): Clarifications on computing e.j
         contribution is smaller and very dependent of the step unit  
         stepm. It is no more the probability to die between last interview  2006-04-28  Brouard Nicolas  <brouard@localhost>
         and month of death but the probability to survive from last  
         interview up to one month before death multiplied by the          * imach.c (Module): Yes the sum of survivors was wrong since
         probability to die within a month. Thanks to Chris          imach-114 because nhstepm was no more computed in the age
         Jackson for correcting this bug.  Former versions increased          loop. Now we define nhstepma in the age loop.
         mortality artificially. The bad side is that we add another loop          (Module): In order to speed up (in case of numerous covariates) we
         which slows down the processing. The difference can be up to 10%          compute health expectancies (without variances) in a first step
         lower mortality.          and then all the health expectancies with variances or standard
           deviation (needs data from the Hessian matrices) which slows the
 2002-05-30    <brouard@BROUARD>          computation.
         *          In the future we should be able to stop the program is only health
         * imach.c (Module): Add correlation matrix of one-step          expectancies and graph are needed without standard deviations.
         probabilities and covariance matrix  
   2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.iss (Module): 
   
           * imach.c (Module): bugs in evsi + population file added in htm output file
   
   2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): 
   
   2006-03-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): <title> changed, corresponds to .htm file
           name. <head> headers where missing.
   
           * Makefile (Module): 0.98g
   
           * imach.c (Module): Weights can have a decimal point as for
           English (a comma might work with a correct LC_NUMERIC environment,
           otherwise the weight is truncated).
           Modification of warning when the covariates values are not 0 or
           1. 
           Version 0.98g
   
   2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): Comments concerning covariates added
   
           * noreg-setup.iss (Module): Version 0.98f
   
           * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
   
           * imach.c (Module): refinements in the computation of lli if
           status=-2 in order to have more reliable computation if stepm is
           not 1 month. Version 0.98f
   
   2006-03-15  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Bug if status = -2, the loglikelihood was
           computed as likelihood omitting the logarithm. Version O.98e
   
   2006-03-14  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): varevsij Comments added explaining the second
           table of variances if popbased=1 .
           (Module): Covariances of eij, ekl added, graphs fixed, new html link.
           (Module): Function pstamp added
           (Module): Version 0.98d 
   
   2006-03-06  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Variance-covariance wrong links and
           varian-covariance of ej. is needed (Saito).
   
   2006-02-27  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): One freematrix added in mlikeli!
   
   2006-02-26  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Some improvements in processing parameter
           filename with strsep.
   
   2006-02-24  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Memory leaks checks with valgrind and:
           datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
   
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * strsep.c (Module): Inclusion because not in mingw32!!!
   
           * setup.iss.in (Module): IMACHSETUPVERSION added
   
           * noreg-setup.iss (Module): added to cvs tree
   
           * Makefile (Module): IMACHSETUPVERSION added
   
   2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
           * Makefile (Module, Module): Latest Makefile
   
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
           * noreg-setup.iss (Module): ADDED
   
   2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
           * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
   2005-09-30    <lievre@PC_00595>
   
           * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
           that the person is alive, then we can code his/her status as -2
           (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
           health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98 
   
   2004-05-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Repository): 
           Agnes added a direct estimation of mortality (without the need of
           computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
           REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
           mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
           the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
           within former imach program (0.96d) without deteriorating too much
           the understanding of the program. 
   
   2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module): 
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
           which slows down the processing. The difference can be up to 10%
           lower mortality.
   
   2002-05-30    <brouard@BROUARD>
   
           * imach.c (Module): Add correlation matrix of one-step
           probabilities and covariance matrix
   
Removed from v.1.49  
changed lines
  Added in v.1.70

FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>