[BACK]Return to ChangeLog CVS log [TXT] [DIR] Up to [Local Repository] / imach / src

Diff for /imach/src/ChangeLog between versions 1.6 and 1.19

version 1.6, 2003/06/17 20:16:05 version 1.19, 2006/02/27 12:23:03
Line 1 Line 1
 2003-06-17  Brouard Nicolas  <brouard@homebrou>  2006-02-27  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Repository): Check when date of death was earlier that          * imach.c (Module): One freematrix added in mlikeli!
         current date of interview. It may happen when the death was just  
         prior to the death. In this case, dh was negative and likelihood  2006-02-26  Brouard Nicolas  <brouard@localhost>
         was wrong (infinity). We still send an "Error" but patch by  
         assuming that the date of death was just one stepm after the          * imach.c (Module): Some improvements in processing parameter
         interview.          filename with strsep.
         (Repository): Because some people have very long ID (first column)  
         we changed int to long in num[] and we added a new lvector for  2006-02-24  Brouard Nicolas  <brouard@localhost>
         memory allocation. But we also truncated to 8 characters (left  
         truncation)          * imach.c (Module): Memory leaks checks with valgrind and:
         (Repository): No more line truncation errors.          datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
 2003-06-14  Brouard Nicolas  <brouard@homebrou>  
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
         * imach.c (Repository): Add of a routine likelione (likelihood  
         only once) which prints on a text file          * strsep.c (Module): Inclusion because not in mingw32!!!
         (ilk) the contributions to the likelihood for each  
         individual/wave.          * setup.iss.in (Module): IMACHSETUPVERSION added
   
 2003-06-13  Brouard Nicolas  <brouard@homebrou>          * noreg-setup.iss (Module): added to cvs tree
   
         * imach.c (Repository): Replace "freqsummary" at a correct          * Makefile (Module): IMACHSETUPVERSION added
         place. It differs from routine "prevalence" which may be called  
         many times. Probs is memory consuming and must be used with  2006-01-30  BROUARD Nicolas  <brouard@localhost>
         parcimony.  
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
 2003-06-17    <brouard@BROUARD>  
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
         * timeval.h (Module): Added included file to make use of  
         gettimeofday working on win32 with cygwin.          * noreg-setup.iss (Module): ADDED
   
 2003-05-16  Brouard Nicolas  <brouard@brouard>  2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
         * imach.c (Module): Insert of a warning if the delay between two          * imach.c (Module): Comments (lines starting with a #) are allowed in data.
         waves is negative.  
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
         * imach.c (Module):  
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
 2003-05-03    <brouard@BROUARD>  
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
         * imach.c: Some cleaning  
 2003-03-28    <brouard@BROUARD>  2005-09-30    <lievre@PC_00595>
   
         * imach.c (Module): In version up to 0.92 likelihood was computed          * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
         as if date of death was unknown. Death was treated as any other          (Module): If the status is missing at the last wave but we know
         health state: the date of the interview describes the actual state          that the person is alive, then we can code his/her status as -2
         and not the date of a change in health state. The former idea was          (instead of missing=-1 in earlier versions) and his/her
         to consider that at each interview the state was recorded          contributions to the likelihood is 1 - Prob of dying from last
         (healthy, disable or death) and IMaCh was corrected; but when we          health status (= 1-p13= p11+p12 in the easiest case of somebody in
         introduced the exact date of death then we should have modified          the healthy state at last known wave). Version is 0.98
         the contribution of an exact death to the likelihood. This new  
         contribution is smaller and very dependent of the step unit  2004-05-20  Brouard Nicolas  <brouard@localhost>
         stepm. It is no more the probability to die between last interview  
         and month of death but the probability to survive from last          * imach.c (Repository):
         interview up to one month before death multiplied by the          Agnes added a direct estimation of mortality (without the need of
         probability to die within a month. Thanks to Chris          computing period prevalence and differential mortality). Thus here
         Jackson for correcting this bug.  Former versions increased          is version 0.97a which has been distributed to some people at
         mortality artificially. The bad side is that we add another loop          REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
         which slows down the processing. The difference can be up to 10%          mortality using covariates is not done today. Estimating direct
         lower mortality.          mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
 2002-05-30    <brouard@BROUARD>          the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
         *          within former imach program (0.96d) without deteriorating too much
           the understanding of the program.
         * imach.c (Module): Add correlation matrix of one-step  
         probabilities and covariance matrix  2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module):
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
   
   
           which slows down the processing. The difference can be up to 10%
   
   
           lower mortality.
   
   
   
   
   
   2002-05-30    <brouard@BROUARD>
   
   
   
   
   
           *
   
   
   
   
   
           * imach.c (Module): Add correlation matrix of one-step
   
   
           probabilities and covariance matrix
   
   
   
   
   
Removed from v.1.6  
changed lines
  Added in v.1.19

FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>