[BACK]Return to ChangeLog CVS log [TXT] [DIR] Up to [Local Repository] / imach / src

Diff for /imach/src/ChangeLog between versions 1.36 and 1.65

version 1.36, 2015/08/18 13:31:23 version 1.65, 2023/05/08 17:46:42
Line 1 Line 1
 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>  2023-04-29  Nicolas Brouard  <brouard@ined.fr>
   
         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.          * imach.c (Module): Inverting the model equation and fixingg bugs
           in the drawings
 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>          "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
   
         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)  2023-04-24  Nicolas Brouard  <brouard@ined.fr>
   
 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>          * imach.c (Module): some bugs in printinggnuplot 
   
         * imach.c (Module): Merging 1.61 to 1.162  2022-09-19  Nicolas Brouard   <brouard@ined.fr>
   
 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>          * imach.c (Module): Version 0.99r42 needed a newer version of
           Gnuplot. But newer version 0.99r43 should run with the Gnuplot
         * prevlim.h (Module):          version 5.0 or 5.1 distributed with IMaCh.
   
 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>  2022-09-18  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...          * imach.c (Module): Fixing when a state in the data is 0 or higher
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.          than lstate+ndeath. Fixing the plot of contribution to Likelihood.
   
 2010-04-29  brouard  <brouard@ined.fr>  2022-09-16  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c (Module): Checking covariates for more complex models          * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you  Feinuo
         than V1+V2. A lot of change to be done. Unstable.  
   2022-09-14  Nicolas Brouard   <brouard@ined.fr>
 2010-04-26  brouard  <brouard@ined.fr>  
           * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
         * imach.c (Module): merging some libgsl code. Fixing computation  
         of likelione (using inter/intrapolation if mle = 0) in order to  2022-09-14  Nicolas Brouard   <brouard@ined.fr>
         get same likelihood as if mle=1.  
         Some cleaning of code and comments added.          * imach.c (Module): Version 0.99r39 with colored dummy covariates
           (fixed or time varying), using new last columns of
 2009-10-29  brouard  <brouard@ined.fr>          ILK_parameter.txt file.
   
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.  2022-09-11  Nicolas Brouard   <brouard@ined.fr>
   
 2006-06-30  Brouard Nicolas  <brouard@localhost>          * imach.c (Module): Adding timevarying products of any kinds,
           should work before shifting cotvar from ncovcol+nqv columns in
         * imach.c (Module): Clarifications on computing e.j          order to have a correspondance between the column of cotvar and
           the id of column.
 2006-04-28  Brouard Nicolas  <brouard@localhost>          (Module): Some cleaning and adding covariates in ILK.txt
   
         * imach.c (Module): Yes the sum of survivors was wrong since  2022-09-09  Nicolas Brouard   <brouard@ined.fr>
         imach-114 because nhstepm was no more computed in the age  
         loop. Now we define nhstepma in the age loop.          * imach.c (Module): Many improvements for fixing products of fixed
         (Module): In order to speed up (in case of numerous covariates) we          timevarying as well as fixed * fixed, and test with quantitative
         compute health expectancies (without variances) in a first step          covariate.
         and then all the health expectancies with variances or standard  
         deviation (needs data from the Hessian matrices) which slows the  2022-09-04  Nicolas Brouard   <brouard@ined.fr>
         computation.  
         In the future we should be able to stop the program is only health          * imach.c (Module): Now the easy runs i.e. without result or
         expectancies and graph are needed without standard deviations.          model=1+age only did not work. The defautl combination should be 1
           and not 0 because everything hasn't been tranformed yet.
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
   2022-09-02  Nicolas Brouard   <brouard@ined.fr>
         * imach.iss (Module):  
           * imach.c: Version 0.99r35 because it outputs same results with
         * imach.c (Module): bugs in evsi + population file added in htm output file          1+age+V1+V1*age for females and 1+age for females only
           (education=1 noweight)
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
   2022-08-31  Nicolas Brouard   <brouard@ined.fr>
         * imach.c (Module):  
           * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
 2006-03-20  Brouard Nicolas  <brouard@localhost>  
   2022-08-21  Nicolas Brouard   <brouard@ined.fr>
         * imach.c (Module): <title> changed, corresponds to .htm file  
         name. <head> headers where missing.          * imach.c (Module): Version 0.99r33 A lot of changes in
           reassigning covariates: my first idea was that people will always
         * Makefile (Module): 0.98g          use the first covariate V1 into the model but in fact they are
           producing data with many covariates and can use an equation model
         * imach.c (Module): Weights can have a decimal point as for          with some of the covariate; it means that in a model V2+V3 instead
         English (a comma might work with a correct LC_NUMERIC environment,          of codtabm(k,Tvaraff[j]) which calculates for combination k, for
         otherwise the weight is truncated).          three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
         Modification of warning when the covariates values are not 0 or          the equation model is restricted to two variables only (V2, V3)
         1.          and the combination for V2 should be codtabm(k,1) instead of
         Version 0.98g          (codtabm(k,2), and the code should be
           codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          made. All of these should be simplified once a day like we did in
           hpxij() for example by using precov[nres] which is computed in
         * imach.c (Module): Comments concerning covariates added          decoderesult for each nres of each resultline. Loop should be done
           on the equation model globally by distinguishing only product with
         * noreg-setup.iss (Module): Version 0.98f          age (which are changing with age) and no more on type of
           covariates, single dummies, single covariates. 
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup  
   2022-08-06  Nicolas Brouard   <brouard@ined.fr>
         * imach.c (Module): refinements in the computation of lli if  
         status=-2 in order to have more reliable computation if stepm is          *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
         not 1 month. Version 0.98f  
   2022-08-03  Nicolas Brouard   <brouard@ined.fr>
 2006-03-15  Brouard Nicolas  <brouard@localhost>  
           *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
         * imach.c (Module): Bug if status = -2, the loglikelihood was  
         computed as likelihood omitting the logarithm. Version O.98e  2022-07-25  Brouard Nicolas  <brouard@brouard.name>
   
 2006-03-14  Brouard Nicolas  <brouard@localhost>          * imach.c (Module): Error cptcovn instead of nsd in bmij (was
           coredumped, revealed by Feiuno, thank you.
         * imach.c (Module): varevsij Comments added explaining the second  
         table of variances if popbased=1 .  2022-07-23  Nicolas Brouard   <brouard@ined.fr>
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.  
         (Module): Function pstamp added          * r29 W and not sqrt(Wald)
         (Module): Version 0.98d  
   2022-07-22  Nicolas Brouard   <brouard@ined.fr>
 2006-03-06  Brouard Nicolas  <brouard@localhost>  
           *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
         * imach.c (Module): Variance-covariance wrong links and  
         varian-covariance of ej. is needed (Saito).  2022-06-02  Brouard Nicolas  <brouard@brouard.name>
   
 2006-02-27  Brouard Nicolas  <brouard@localhost>          * imach.c (Module): Adding the Wald tests from the log to the main
           htm for better display of the maximum likelihood estimators.
         * imach.c (Module): One freematrix added in mlikeli!  
   2022-05-30  Brouard Nicolas  <brouard@brouard.name>
 2006-02-26  Brouard Nicolas  <brouard@localhost>  
           * imach.c: With products of covariates (age or dummies or
         * imach.c (Module): Some improvements in processing parameter          quantitatives), estimates of parameters were good but when
         filename with strsep.          estimating variances the positions of newly created covariates
           were wrongly assigned and results were wrong. Thank to Feinua_Sun!
 2006-02-24  Brouard Nicolas  <brouard@localhost>  
   2022-05-24  Nicolas Brouard   <brouard@ined.fr>
         * imach.c (Module): Memory leaks checks with valgrind and:  
         datafile was not closed, some imatrix were not freed and on matrix          * imach.c (Module): Some attempts to find a bug of wrong estimates
         allocation too.          of confidencce intervals with product in the equation modelC
   
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  2022-05-15  Nicolas Brouard   <brouard@ined.fr>
   
         * strsep.c (Module): Inclusion because not in mingw32!!!          * imach.c (Module):  Some minor improvements
   
         * setup.iss.in (Module): IMACHSETUPVERSION added  2022-04-13  Brouard Nicolas  <brouard@brouard.name>
   
         * noreg-setup.iss (Module): added to cvs tree          * imach.c (Module): Adding link to text data files
   
         * Makefile (Module): IMACHSETUPVERSION added  2022-04-11  Nicolas Brouard   <brouard@ined.fr>
   
 2006-01-30  BROUARD Nicolas  <brouard@localhost>          * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
   
         * Makefile (Module, Module): Latest Makefile  2022-04-05  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe          * imach.c (Module): Fixed covariates (dummy or quantitative)
           with missing values have never been allowed but are ERRORS and
 2006-01-27  BROUARD Nicolas  <brouard@localhost>          program quits. Standard deviations of fixed covariates were
           wrongly computed. Mean and standard deviations of time varying
         * noreg-setup.iss (Module): ADDED          covariates are still not computed.
   
 2006-01-24  BROUARD Nicolas  <brouard@localhost>  2022-03-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.          * 99r25 Improvements in fixing discrepancies between covariates
           missing in result line but in model. 
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>  
   *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg          * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
   
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X  *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
   
 2005-09-30    <lievre@PC_00595>          * ./ (Module): Fixed bug on result:
   
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.  *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
         (Module): If the status is missing at the last wave but we know  
         that the person is alive, then we can code his/her status as -2          * imach.c (Module): Fix bug on quitting after result lines!
         (instead of missing=-1 in earlier versions) and his/her          (Module): Version 0.99r21
         contributions to the likelihood is 1 - Prob of dying from last  
         health status (= 1-p13= p11+p12 in the easiest case of somebody in  2021-02-12  Nicolas Brouard   <brouard@ined.fr>
         the healthy state at last known wave). Version is 0.98  
           * imach.c (Module): The use of a Windows BOM (huge) file is now an error
 2004-05-20  Brouard Nicolas  <brouard@localhost>  
   
         * imach.c (Repository):  2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
         Agnes added a direct estimation of mortality (without the need of  
         computing period prevalence and differential mortality). Thus here          *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
         is version 0.97a which has been distributed to some people at  
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of  2020-02-22  Brouard Nicolas  <brouard@ined.fr>
         mortality using covariates is not done today. Estimating direct  
         mortality is a very different process because it doesn't need          *  (Module): imach.c Update mle=-3 (for computing Life expectancy
         interpolation because it is easy to get the lx from the force of          and life table from the data without any state)
         the mortality mux in the simplest case as for a Gompertz (log mux  
         = a + b*x . But we have been able to incorporate the new code  2019-05-20  Brouard Nicolas  <brouard@ined.fr>
         within former imach program (0.96d) without deteriorating too much  
         the understanding of the program.          * version.h: Summary: version 0.99.r19
   
 2003-06-25    <brouard@BROUARD>          * imach.c: Summary: Projection syntax simplified
           We can now start projections, forward or backward, from the mean date
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't          of inteviews up to or down to a number of years of projection:
         exist so I changed back to asctime which exists.          prevforecast=1 yearsfproj=15.3 mobil_average=0
         (Module): Version 0.96b          or
           prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
 2003-06-24    <brouard@BROUARD>          or
           prevbackcast=1 yearsbproj=12.3 mobil_average=1
         * imach.c (Module): Some bugs corrected for windows. Also, when          or
         mle=-1 a template is output in file "or"mypar.txt with the design          prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
         of the covariance matrix to be input.  
   2019-05-18  Brouard Nicolas  <brouard@ined.fr>
 2003-06-25  Brouard Nicolas  <brouard@homebrou>  
           * imach.c: Summary: doxygen tex bug
         * imach.c (Repository): Duplicated warning errors corrected.  
         (Repository): Elapsed time after each iteration is now output. It  2019-05-16  Brouard Nicolas  <brouard@ined.fr>
         helps to forecast when convergence will be reached. Elapsed time  
         is stamped in powell.  We created a new html file for the graphs          * imach.c: Summary: There was some wrong lines added
         concerning matrix of covariance. It has extension -cov.htm.  
   2019-05-09  Brouard Nicolas  <brouard@ined.fr>
 2003-06-23  Brouard Nicolas  <brouard@homebrou>  
           * Makefile, imach.c: *** empty log message ***
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.  
           * ChangeLog: Summary: C=
 2003-06-18  Brouard Nicolas  <brouard@homebrou>  
           * imach.c: Summary: Some updates
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96  
           * imach.c: Summary: Before ncovmax
 2003-06-17  Brouard Nicolas  <brouard@homebrou>  
           * version.h: *** empty log message ***
   
         * imach.c (Repository): Check when date of death was earlier that          * imach.c: Summary: 0.99r18 unlimited number of individuals
         current date of interview. It may happen when the death was just          The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
         prior to the death. In this case, dh was negative and likelihood  
         was wrong (infinity). We still send an "Error" but patch by  2018-12-13  Brouard Nicolas  <brouard@ined.fr>
         assuming that the date of death was just one stepm after the  
         interview.          * imach.c: Summary: Bug for young ages (<-30) will be in r17
         (Repository): Because some people have very long ID (first column)  
         we changed int to long in num[] and we added a new lvector for  2018-12-05  Brouard Nicolas  <brouard@ined.fr>
         memory allocation. But we also truncated to 8 characters (left  
         truncation)          * Makefile: Summary: 0.99r16
   
         (Repository): No more line truncation errors.  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
 2003-06-14  Brouard Nicolas  <brouard@homebrou>          * imach.c: Summary: Some bugs fixed
   
         * imach.c (Repository): Add of a routine likelione (likelihood  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         only once) which prints on a text file  
         (ilk) the contributions to the likelihood for each          * imach.c:  Summary: Bug for young ages (<-30) will be in r17
         individual/wave.  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
 2003-06-13  Brouard Nicolas  <brouard@homebrou>  
         * imach.c (Repository): Replace "freqsummary" at a correct          * imach.c: Summary: Some bugs fixed
         place. It differs from routine "prevalence" which may be called  
         many times. Probs is memory consuming and must be used with  2018-05-01  Brouard Nicolas  <brouard@ined.fr>
         parcimony.  
           * imach.c:
 2003-06-17    <brouard@BROUARD>          Summary: Bug fixed by providing frequencies only for non missing covariates
   
         * timeval.h (Module): Added included file to make use of  2018-04-27  Brouard Nicolas  <brouard@ined.fr>
         gettimeofday working on win32 with cygwin.  
           * imach.c: Summary: some minor bugs
 2003-05-16  Brouard Nicolas  <brouard@brouard>  
         * imach.c (Module): Insert of a warning if the delay between two  2018-04-21  Brouard Nicolas  <brouard@ined.fr>
         waves is negative.  
           * README.txt: *** empty log message ***
         * imach.c (Module):  
           * imach.c: Summary: Some bugs fixed, valgrind tested
 2003-05-03    <brouard@BROUARD>  
   2018-04-20  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Some cleaning  
           * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
 2003-03-28    <brouard@BROUARD>  
         * imach.c (Module): In version up to 0.92 likelihood was computed          * imach.c:
         as if date of death was unknown. Death was treated as any other          Summary: Computing mean and stdeviation of fixed quantitative variables
         health state: the date of the interview describes the actual state  
         and not the date of a change in health state. The former idea was  2018-04-19  Brouard Nicolas  <brouard@ined.fr>
         to consider that at each interview the state was recorded  
         (healthy, disable or death) and IMaCh was corrected; but when we          * imach.c: Summary: Some minor bugs fixed
         introduced the exact date of death then we should have modified  
         the contribution of an exact death to the likelihood. This new          * version.h: *** empty log message ***
         contribution is smaller and very dependent of the step unit  
         stepm. It is no more the probability to die between last interview  2018-02-27  Brouard Nicolas  <brouard@ined.fr>
         and month of death but the probability to survive from last  
         interview up to one month before death multiplied by the          * imach.c: *** empty log message ***
         probability to die within a month. Thanks to Chris  
         Jackson for correcting this bug.  Former versions increased          * imach.c: Summary: Adding second argument for quitting
         mortality artificially. The bad side is that we add another loop  
   2018-02-21  Brouard Nicolas  <brouard@ined.fr>
   
         which slows down the processing. The difference can be up to 10%          * Makefile, README.txt, imach.c: Summary: 0.99r15
           New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
   
         lower mortality.  2017-07-20  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: temporary working
   
   2017-07-19  Brouard Nicolas  <brouard@ined.fr>
   
 2002-05-30    <brouard@BROUARD>          * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
   
   2017-07-17  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: BOM files can be read now
   
         *  2017-06-30  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Graphs improvements
   
           * imach.c: Summary: Saito's color
   
         * imach.c (Module): Add correlation matrix of one-step  2017-06-29  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Version 0.99r14
         probabilities and covariance matrix  
   2017-06-27  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: More documentation on projections
   
           * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
   
           * imach.c: Summary: Some bug with rint
   
   2017-05-24  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2017-05-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Code into subroutine, cleanings
   
   2017-05-18  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: backprojection and confidence intervals of backprevalence
   
   2017-05-13  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: temporary save for backprojection
   
           * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
   
   2017-04-26  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: imach 0.99r13 Some bugs fixed
   
           * imach.c: Summary: Labels in graphs
   
   2017-04-24  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: to save
   
   2017-04-18  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2017-04-05  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
   
   2017-04-04  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Gnuplot indexations fixed (humm)
   
           * imach.c:
           Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
   
   2017-04-03  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Version 0.99r12
           Some cleanings, conformed with updated documentation.
   
   2017-03-30  Brouard Nicolas  <brouard@ined.fr>
   
           * version.h: *** empty log message ***
   
           * version.h: Summary:0.99r11
   
   2017-03-29  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Temp
   
   2017-03-27  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Temporary
   
   2017-03-08  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
   
           * imach.c: Summary: Fixing data parameter line
   
   2016-12-15  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: 0.99 in progress
   
   2016-09-15  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
           * imach.c: Summary: not working
   
   2016-09-08  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: continue
   
   2016-09-07  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Starting values from frequencies
   
           * imach.c: *** empty log message ***
   
   2016-09-02  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2016-08-30  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Fixing a lots
   
   2016-08-29  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: gnuplot problem in Back projection to fix
   
           * imach.c: Summary: Better
   
   2016-08-26  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: Improvement in Powell output in order to copy and paste
   
           * imach.c: Summary: Starting tests of 0.99
   
           * imach.c: Summary: to valgrind
   
   2016-08-25  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2016-08-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
           * imach.c: Summary: not working
   
   2016-08-22  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: not working
   
           * imach.c: Summary: Not working
   
   2016-07-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Completing for func too
   
   2016-07-22  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Fixing some arrays, still debugging
   
   2016-07-21  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
   
   2016-07-12  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: temp
   
           * imach.c: Summary: saving but not running
   
   2016-07-01  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Fixes
   
   2016-02-19  Brouard Nicolas  <brouard@ined.fr>
   
           * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
   
           * setup.iss, Makefile, version.h: *** empty log message ***
   
           * imach.c: Summary: temporary
   
   2016-02-17  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Probably last 0.98 stable version 0.98r6
   
   2016-02-16  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: minor bug
   
           * imach.c: Summary: 0.99r2
   
   2016-02-15  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2016-02-12  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: 0.99 Back projections
   
   2015-12-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Experimental backcast
   
   2015-12-18  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: 0.98r4 Warning and status=-2
   
           Version 0.98r4 is now:
            - displaying an error when status is -1, date of interview unknown and date of death known;
            - permitting a status -2 when the vital status is unknown at a known date of right truncation.
           Older changes concerning s=-2, dating from 2005 have been supersed.
   
           * Makefile: *** empty log message ***
   
   2015-12-16  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: *** empty log message ***
   
           * imach.c: Summary: 0.98r4 working
   
           * Makefile: Summary: linuxrpm added
   
           * Makefile: *** empty log message ***
   
           * imach.c: Summary: temporary not working
   
   2015-12-11  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: 0.98r4
   
   2015-12-08  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: *** empty log message ***
   
   2015-11-21  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile:
           Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
   
           * imach.c: Summary: minor typo
   
           * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
   
           Author: Nicolas Brouard
   
   2015-11-18  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Start working on projected prevalences
   
   2015-11-17  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Adding ftolpl parameter
           Author: N Brouard
   
           We had difficulties to get smoothed confidence intervals. It was due
           to the period prevalence which wasn't computed accurately. The inner
           parameter ftolpl is now an outer parameter of the .imach parameter
           file after estepm. If ftolpl is small 1.e-4 and estepm too,
           computation are long.
   
           * version.h: *** empty log message ***
   
           * imach.c: Summary: temporary
   
   2015-10-27  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: *** empty log message ***
   
           * setup.iss.in: Summary: some new subdirs
   
           * imach.c: *** empty log message ***
   
           * setup.iss.in:
           Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
   
   2015-10-24  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2015-10-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: 0.98r3 some clarification for graphs on likelihood contributions
   
   2015-10-01  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Some new graphs of contribution to likelihood
   
   2015-09-30  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile:
           Summary: Version read from version.h, itself read with cmake
   
           * imach.c: Summary: looking at better estimation of the hessian
   
           Also a better criteria for convergence to the period prevalence And
           therefore adding the number of years needed to converge. (The
           prevalence in any alive state shold sum to one
   
           * Makefile: *** empty log message ***
   
   2015-09-22  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: Adding some overall graph on contribution to likelihood. Might change
   
   2015-09-15  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: *** empty log message ***
   
           * imach.c: Summary: 0.98r0
   
           - Some new graphs like survival functions
           - Some bugs fixed like model=1+age+V2.
   
           * ChangeLog, Makefile: Summary: 0.98r0
   
           * CMakeLists.txt: Summary: Some tests for setup.iss
   
   2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
           *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
   
   2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
   
           *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
   
   2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
           *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
   
   2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
   
           * imach.c (Module): Merging 1.61 to 1.162
   
   2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
   
           * prevlim.h (Module): 
   
   2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
   
           * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
           (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
   
   2010-04-29  brouard  <brouard@ined.fr>
   
           * imach.c (Module): Checking covariates for more complex models
           than V1+V2. A lot of change to be done. Unstable.
   
   2010-04-26  brouard  <brouard@ined.fr>
   
           * imach.c (Module): merging some libgsl code. Fixing computation
           of likelione (using inter/intrapolation if mle = 0) in order to
           get same likelihood as if mle=1.
           Some cleaning of code and comments added.
   
   2009-10-29  brouard  <brouard@ined.fr>
   
           * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
   
   2006-06-30  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Clarifications on computing e.j
   
   2006-04-28  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Yes the sum of survivors was wrong since
           imach-114 because nhstepm was no more computed in the age
           loop. Now we define nhstepma in the age loop.
           (Module): In order to speed up (in case of numerous covariates) we
           compute health expectancies (without variances) in a first step
           and then all the health expectancies with variances or standard
           deviation (needs data from the Hessian matrices) which slows the
           computation.
           In the future we should be able to stop the program is only health
           expectancies and graph are needed without standard deviations.
   
   2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.iss (Module): 
   
           * imach.c (Module): bugs in evsi + population file added in htm output file
   
   2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): 
   
   2006-03-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): <title> changed, corresponds to .htm file
           name. <head> headers where missing.
   
           * Makefile (Module): 0.98g
   
           * imach.c (Module): Weights can have a decimal point as for
           English (a comma might work with a correct LC_NUMERIC environment,
           otherwise the weight is truncated).
           Modification of warning when the covariates values are not 0 or
           1. 
           Version 0.98g
   
   2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): Comments concerning covariates added
   
           * noreg-setup.iss (Module): Version 0.98f
   
           * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
   
           * imach.c (Module): refinements in the computation of lli if
           status=-2 in order to have more reliable computation if stepm is
           not 1 month. Version 0.98f
   
   2006-03-15  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Bug if status = -2, the loglikelihood was
           computed as likelihood omitting the logarithm. Version O.98e
   
   2006-03-14  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): varevsij Comments added explaining the second
           table of variances if popbased=1 .
           (Module): Covariances of eij, ekl added, graphs fixed, new html link.
           (Module): Function pstamp added
           (Module): Version 0.98d 
   
   2006-03-06  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Variance-covariance wrong links and
           varian-covariance of ej. is needed (Saito).
   
   2006-02-27  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): One freematrix added in mlikeli!
   
   2006-02-26  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Some improvements in processing parameter
           filename with strsep.
   
   2006-02-24  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Memory leaks checks with valgrind and:
           datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
   
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * strsep.c (Module): Inclusion because not in mingw32!!!
   
           * setup.iss.in (Module): IMACHSETUPVERSION added
   
           * noreg-setup.iss (Module): added to cvs tree
   
           * Makefile (Module): IMACHSETUPVERSION added
   
   2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
           * Makefile (Module, Module): Latest Makefile
   
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
           * noreg-setup.iss (Module): ADDED
   
   2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
           * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
   2005-09-30    <lievre@PC_00595>
   
           * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
           that the person is alive, then we can code his/her status as -2
           (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
           health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98 
   
   2004-05-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Repository): 
           Agnes added a direct estimation of mortality (without the need of
           computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
           REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
           mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
           the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
           within former imach program (0.96d) without deteriorating too much
           the understanding of the program. 
   
   2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module): 
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
           which slows down the processing. The difference can be up to 10%
           lower mortality.
   
   2002-05-30    <brouard@BROUARD>
   
           * imach.c (Module): Add correlation matrix of one-step
           probabilities and covariance matrix
   
Removed from v.1.36  
changed lines
  Added in v.1.65

FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>