Diff for /imach/src/ChangeLog between versions 1.46 and 1.67

version 1.46, 2022/03/15 18:40:36 version 1.67, 2023/05/23 12:25:36
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 *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>  2023-05-23  Nicolas Brouard   <brouard@ined.fr>
         * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett  
           * imach.c (Module): Fixed PROB_r 
 *2021-03-08  Nicolas Brouard   <brouard@ined.fr>  
   2023-05-22  Nicolas Brouard   <brouard@ined.fr>
         * ./ (Module): Fixed bug on result:  
           * imach.c (Module): In the ILK....txt file, the number of columns
 *2021-02-20  Nicolas Brouard   <brouard@ined.fr>          before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
   
         * imach.c (Module): Fix bug on quitting after result lines!  2023-05-08  Nicolas Brouard   <brouard@ined.fr>
         (Module): Version 0.99r21  
           *  (Module): Error V0 when result:. and model 1+age+V1: fixed
 2021-02-12  Nicolas Brouard   <brouard@ined.fr>  
   2023-04-29  Nicolas Brouard  <brouard@ined.fr>
         * imach.c (Module): The use of a Windows BOM (huge) file is now an error  
           * imach.c (Module): Inverting the model equation and fixingg bugs
           in the drawings
 2021-02-11  Nicolas  Brouard   <brouard@ined.fr>          "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
   
         *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.  2023-04-24  Nicolas Brouard  <brouard@ined.fr>
   
 2020-02-22  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): some bugs in printinggnuplot 
   
         *  (Module): imach.c Update mle=-3 (for computing Life expectancy  2022-09-19  Nicolas Brouard   <brouard@ined.fr>
         and life table from the data without any state)  
           * imach.c (Module): Version 0.99r42 needed a newer version of
 2019-05-20  Brouard Nicolas  <brouard@ined.fr>          Gnuplot. But newer version 0.99r43 should run with the Gnuplot
           version 5.0 or 5.1 distributed with IMaCh.
         * version.h: Summary: version 0.99.r19  
   2022-09-18  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Projection syntax simplified  
         We can now start projections, forward or backward, from the mean date          * imach.c (Module): Fixing when a state in the data is 0 or higher
         of inteviews up to or down to a number of years of projection:          than lstate+ndeath. Fixing the plot of contribution to Likelihood.
         prevforecast=1 yearsfproj=15.3 mobil_average=0  
         or  2022-09-16  Nicolas Brouard   <brouard@ined.fr>
         prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0  
         or          * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you  Feinuo
         prevbackcast=1 yearsbproj=12.3 mobil_average=1  
         or  2022-09-14  Nicolas Brouard   <brouard@ined.fr>
         prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1  
           * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
 2019-05-18  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-14  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: doxygen tex bug  
           * imach.c (Module): Version 0.99r39 with colored dummy covariates
 2019-05-16  Brouard Nicolas  <brouard@ined.fr>          (fixed or time varying), using new last columns of
           ILK_parameter.txt file.
         * imach.c: Summary: There was some wrong lines added  
   2022-09-11  Nicolas Brouard   <brouard@ined.fr>
 2019-05-09  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Adding timevarying products of any kinds,
         * Makefile, imach.c: *** empty log message ***          should work before shifting cotvar from ncovcol+nqv columns in
           order to have a correspondance between the column of cotvar and
         * ChangeLog: Summary: C=          the id of column.
           (Module): Some cleaning and adding covariates in ILK.txt
         * imach.c: Summary: Some updates  
   2022-09-09  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Before ncovmax  
           * imach.c (Module): Many improvements for fixing products of fixed
         * version.h: *** empty log message ***          timevarying as well as fixed * fixed, and test with quantitative
           covariate.
         * imach.c: Summary: 0.99r18 unlimited number of individuals  
         The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.  2022-09-04  Nicolas Brouard   <brouard@ined.fr>
   
 2018-12-13  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Now the easy runs i.e. without result or
           model=1+age only did not work. The defautl combination should be 1
         * imach.c: Summary: Bug for young ages (<-30) will be in r17          and not 0 because everything hasn't been tranformed yet.
   
 2018-12-05  Brouard Nicolas  <brouard@ined.fr>  2022-09-02  Nicolas Brouard   <brouard@ined.fr>
   
         * Makefile: Summary: 0.99r16          * imach.c: Version 0.99r35 because it outputs same results with
           1+age+V1+V1*age for females and 1+age for females only
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>          (education=1 noweight)
   
         * imach.c: Summary: Some bugs fixed  2022-08-31  Nicolas Brouard   <brouard@ined.fr>
   
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
   
         * imach.c:  Summary: Bug for young ages (<-30) will be in r17  2022-08-21  Nicolas Brouard   <brouard@ined.fr>
   
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Version 0.99r33 A lot of changes in
           reassigning covariates: my first idea was that people will always
         * imach.c: Summary: Some bugs fixed          use the first covariate V1 into the model but in fact they are
           producing data with many covariates and can use an equation model
 2018-05-01  Brouard Nicolas  <brouard@ined.fr>          with some of the covariate; it means that in a model V2+V3 instead
           of codtabm(k,Tvaraff[j]) which calculates for combination k, for
         * imach.c:          three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
         Summary: Bug fixed by providing frequencies only for non missing covariates          the equation model is restricted to two variables only (V2, V3)
           and the combination for V2 should be codtabm(k,1) instead of
 2018-04-27  Brouard Nicolas  <brouard@ined.fr>          (codtabm(k,2), and the code should be
           codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
         * imach.c: Summary: some minor bugs          made. All of these should be simplified once a day like we did in
           hpxij() for example by using precov[nres] which is computed in
 2018-04-21  Brouard Nicolas  <brouard@ined.fr>          decoderesult for each nres of each resultline. Loop should be done
           on the equation model globally by distinguishing only product with
         * README.txt: *** empty log message ***          age (which are changing with age) and no more on type of
           covariates, single dummies, single covariates. 
         * imach.c: Summary: Some bugs fixed, valgrind tested  
   2022-08-06  Nicolas Brouard   <brouard@ined.fr>
 2018-04-20  Brouard Nicolas  <brouard@ined.fr>  
           *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
         * Makefile, README.txt, setup.iss: Summary: imach 0.99r16  
   2022-08-03  Nicolas Brouard   <brouard@ined.fr>
         * imach.c:  
         Summary: Computing mean and stdeviation of fixed quantitative variables          *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
   
 2018-04-19  Brouard Nicolas  <brouard@ined.fr>  2022-07-25  Brouard Nicolas  <brouard@brouard.name>
   
         * imach.c: Summary: Some minor bugs fixed          * imach.c (Module): Error cptcovn instead of nsd in bmij (was
           coredumped, revealed by Feiuno, thank you.
         * version.h: *** empty log message ***  
   2022-07-23  Nicolas Brouard   <brouard@ined.fr>
 2018-02-27  Brouard Nicolas  <brouard@ined.fr>  
           * r29 W and not sqrt(Wald)
         * imach.c: *** empty log message ***  
   2022-07-22  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Adding second argument for quitting  
           *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
 2018-02-21  Brouard Nicolas  <brouard@ined.fr>  
   2022-06-02  Brouard Nicolas  <brouard@brouard.name>
         * Makefile, README.txt, imach.c: Summary: 0.99r15  
         New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c          * imach.c (Module): Adding the Wald tests from the log to the main
           htm for better display of the maximum likelihood estimators.
 2017-07-20  Brouard Nicolas  <brouard@ined.fr>  
   2022-05-30  Brouard Nicolas  <brouard@brouard.name>
         * imach.c: Summary: temporary working  
           * imach.c: With products of covariates (age or dummies or
 2017-07-19  Brouard Nicolas  <brouard@ined.fr>          quantitatives), estimates of parameters were good but when
           estimating variances the positions of newly created covariates
         * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)          were wrongly assigned and results were wrong. Thank to Feinua_Sun!
   
 2017-07-17  Brouard Nicolas  <brouard@ined.fr>  2022-05-24  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: BOM files can be read now          * imach.c (Module): Some attempts to find a bug of wrong estimates
           of confidencce intervals with product in the equation modelC
 2017-06-30  Brouard Nicolas  <brouard@ined.fr>  
   2022-05-15  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Graphs improvements  
           * imach.c (Module):  Some minor improvements
         * imach.c: Summary: Saito's color  
   2022-04-13  Brouard Nicolas  <brouard@brouard.name>
 2017-06-29  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Adding link to text data files
         * imach.c: Summary: Version 0.99r14  
   2022-04-11  Nicolas Brouard   <brouard@ined.fr>
 2017-06-27  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
         * imach.c: Summary: More documentation on projections  
   2022-04-05  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)  
           * imach.c (Module): Fixed covariates (dummy or quantitative)
         * imach.c: Summary: Some bug with rint          with missing values have never been allowed but are ERRORS and
           program quits. Standard deviations of fixed covariates were
 2017-05-24  Brouard Nicolas  <brouard@ined.fr>          wrongly computed. Mean and standard deviations of time varying
           covariates are still not computed.
         * imach.c: *** empty log message ***  
   2022-03-17  Brouard Nicolas  <brouard@ined.fr>
 2017-05-23  Brouard Nicolas  <brouard@ined.fr>  
           * 99r25 Improvements in fixing discrepancies between covariates
         * imach.c: Summary: Code into subroutine, cleanings          missing in result line but in model. 
   
 2017-05-18  Brouard Nicolas  <brouard@ined.fr>  *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
           * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
         * imach.c:  
         Summary: backprojection and confidence intervals of backprevalence  *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
   
 2017-05-13  Brouard Nicolas  <brouard@ined.fr>          * ./ (Module): Fixed bug on result:
   
         * imach.c: Summary: temporary save for backprojection  *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)          * imach.c (Module): Fix bug on quitting after result lines!
           (Module): Version 0.99r21
 2017-04-26  Brouard Nicolas  <brouard@ined.fr>  
   2021-02-12  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: imach 0.99r13 Some bugs fixed  
           * imach.c (Module): The use of a Windows BOM (huge) file is now an error
         * imach.c: Summary: Labels in graphs  
   
 2017-04-24  Brouard Nicolas  <brouard@ined.fr>  2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: to save          *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
   
 2017-04-18  Brouard Nicolas  <brouard@ined.fr>  2020-02-22  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          *  (Module): imach.c Update mle=-3 (for computing Life expectancy
           and life table from the data without any state)
 2017-04-05  Brouard Nicolas  <brouard@ined.fr>  
   2019-05-20  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1  
           * version.h: Summary: version 0.99.r19
 2017-04-04  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Projection syntax simplified
         * imach.c: Summary: Gnuplot indexations fixed (humm)          We can now start projections, forward or backward, from the mean date
           of inteviews up to or down to a number of years of projection:
         * imach.c:          prevforecast=1 yearsfproj=15.3 mobil_average=0
         Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3          or
           prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
 2017-04-03  Brouard Nicolas  <brouard@ined.fr>          or
           prevbackcast=1 yearsbproj=12.3 mobil_average=1
         * imach.c: Summary: Version 0.99r12          or
         Some cleanings, conformed with updated documentation.          prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
   
 2017-03-30  Brouard Nicolas  <brouard@ined.fr>  2019-05-18  Brouard Nicolas  <brouard@ined.fr>
   
         * version.h: *** empty log message ***          * imach.c: Summary: doxygen tex bug
   
         * version.h: Summary:0.99r11  2019-05-16  Brouard Nicolas  <brouard@ined.fr>
   
 2017-03-29  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: There was some wrong lines added
   
         * imach.c: Summary: Temp  2019-05-09  Brouard Nicolas  <brouard@ined.fr>
   
 2017-03-27  Brouard Nicolas  <brouard@ined.fr>          * Makefile, imach.c: *** empty log message ***
   
         * imach.c: Summary: Temporary          * ChangeLog: Summary: C=
   
 2017-03-08  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Some updates
   
         * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed          * imach.c: Summary: Before ncovmax
   
         * imach.c: Summary: Fixing data parameter line          * version.h: *** empty log message ***
   
 2016-12-15  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: 0.99r18 unlimited number of individuals
           The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
         * imach.c: Summary: 0.99 in progress  
   2018-12-13  Brouard Nicolas  <brouard@ined.fr>
 2016-09-15  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Bug for young ages (<-30) will be in r17
         * imach.c: *** empty log message ***  
   2018-12-05  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: not working  
           * Makefile: Summary: 0.99r16
 2016-09-08  Brouard Nicolas  <brouard@ined.fr>  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: continue  
           * imach.c: Summary: Some bugs fixed
 2016-09-07  Brouard Nicolas  <brouard@ined.fr>  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Starting values from frequencies  
           * imach.c:  Summary: Bug for young ages (<-30) will be in r17
         * imach.c: *** empty log message ***  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
 2016-09-02  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Some bugs fixed
         * imach.c: *** empty log message ***  
   2018-05-01  Brouard Nicolas  <brouard@ined.fr>
 2016-08-30  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c:
         * imach.c: Summary: Fixing a lots          Summary: Bug fixed by providing frequencies only for non missing covariates
   
 2016-08-29  Brouard Nicolas  <brouard@ined.fr>  2018-04-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: gnuplot problem in Back projection to fix          * imach.c: Summary: some minor bugs
   
         * imach.c: Summary: Better  2018-04-21  Brouard Nicolas  <brouard@ined.fr>
   
 2016-08-26  Brouard Nicolas  <brouard@ined.fr>          * README.txt: *** empty log message ***
   
         * imach.c:          * imach.c: Summary: Some bugs fixed, valgrind tested
         Summary: Improvement in Powell output in order to copy and paste  
   2018-04-20  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Starting tests of 0.99  
           * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
         * imach.c: Summary: to valgrind  
           * imach.c:
 2016-08-25  Brouard Nicolas  <brouard@ined.fr>          Summary: Computing mean and stdeviation of fixed quantitative variables
   
         * imach.c: *** empty log message ***  2018-04-19  Brouard Nicolas  <brouard@ined.fr>
   
 2016-08-23  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Some minor bugs fixed
   
         * imach.c: *** empty log message ***          * version.h: *** empty log message ***
   
         * imach.c: Summary: not working  2018-02-27  Brouard Nicolas  <brouard@ined.fr>
   
 2016-08-22  Brouard Nicolas  <brouard@ined.fr>          * imach.c: *** empty log message ***
   
         * imach.c: Summary: not working          * imach.c: Summary: Adding second argument for quitting
   
         * imach.c: Summary: Not working  2018-02-21  Brouard Nicolas  <brouard@ined.fr>
   
 2016-07-23  Brouard Nicolas  <brouard@ined.fr>          * Makefile, README.txt, imach.c: Summary: 0.99r15
           New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
         * imach.c: Summary: Completing for func too  
   2017-07-20  Brouard Nicolas  <brouard@ined.fr>
 2016-07-22  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: temporary working
         * imach.c: Summary: Fixing some arrays, still debugging  
   2017-07-19  Brouard Nicolas  <brouard@ined.fr>
 2016-07-21  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
         * imach.c:  
         Summary: 0.99 working (more or less) for Asian Workshop on multitate methods  2017-07-17  Brouard Nicolas  <brouard@ined.fr>
   
 2016-07-12  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: BOM files can be read now
   
         * imach.c: Summary: temp  2017-06-30  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: saving but not running          * imach.c: Summary: Graphs improvements
   
 2016-07-01  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Saito's color
   
         * imach.c: Summary: Fixes  2017-06-29  Brouard Nicolas  <brouard@ined.fr>
   
 2016-02-19  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Version 0.99r14
   
         * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7  2017-06-27  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss, Makefile, version.h: *** empty log message ***          * imach.c: Summary: More documentation on projections
   
         * imach.c: Summary: temporary          * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
   
 2016-02-17  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Some bug with rint
   
         * imach.c: Summary: Probably last 0.98 stable version 0.98r6  2017-05-24  Brouard Nicolas  <brouard@ined.fr>
   
 2016-02-16  Brouard Nicolas  <brouard@ined.fr>          * imach.c: *** empty log message ***
   
         * imach.c: Summary: minor bug  2017-05-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.99r2          * imach.c: Summary: Code into subroutine, cleanings
   
 2016-02-15  Brouard Nicolas  <brouard@ined.fr>  2017-05-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c:
           Summary: backprojection and confidence intervals of backprevalence
 2016-02-12  Brouard Nicolas  <brouard@ined.fr>  
   2017-05-13  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.99 Back projections  
           * imach.c: Summary: temporary save for backprojection
 2015-12-23  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
         * imach.c: Summary: Experimental backcast  
   2017-04-26  Brouard Nicolas  <brouard@ined.fr>
 2015-12-18  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: imach 0.99r13 Some bugs fixed
         * imach.c: Summary: 0.98r4 Warning and status=-2  
           * imach.c: Summary: Labels in graphs
         Version 0.98r4 is now:  
          - displaying an error when status is -1, date of interview unknown and date of death known;  2017-04-24  Brouard Nicolas  <brouard@ined.fr>
          - permitting a status -2 when the vital status is unknown at a known date of right truncation.  
         Older changes concerning s=-2, dating from 2005 have been supersed.          * imach.c: Summary: to save
   
         * Makefile: *** empty log message ***  2017-04-18  Brouard Nicolas  <brouard@ined.fr>
   
 2015-12-16  Brouard Nicolas  <brouard@ined.fr>          * imach.c: *** empty log message ***
   
         * Makefile: *** empty log message ***  2017-04-05  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r4 working          * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
   
         * Makefile: Summary: linuxrpm added  2017-04-04  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: *** empty log message ***          * imach.c: Summary: Gnuplot indexations fixed (humm)
   
         * imach.c: Summary: temporary not working          * imach.c:
           Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
 2015-12-11  Brouard Nicolas  <brouard@ined.fr>  
   2017-04-03  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.98r4  
           * imach.c: Summary: Version 0.99r12
 2015-12-08  Brouard Nicolas  <brouard@ined.fr>          Some cleanings, conformed with updated documentation.
   
         * Makefile: *** empty log message ***  2017-03-30  Brouard Nicolas  <brouard@ined.fr>
   
 2015-11-21  Brouard Nicolas  <brouard@ined.fr>          * version.h: *** empty log message ***
   
         * Makefile:          * version.h: Summary:0.99r11
         Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more  
   2017-03-29  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: minor typo  
           * imach.c: Summary: Temp
         * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional  
   2017-03-27  Brouard Nicolas  <brouard@ined.fr>
         Author: Nicolas Brouard  
           * imach.c: Summary: Temporary
 2015-11-18  Brouard Nicolas  <brouard@ined.fr>  
   2017-03-08  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Start working on projected prevalences  
           * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
 2015-11-17  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Fixing data parameter line
         * imach.c: Summary: Adding ftolpl parameter  
         Author: N Brouard  2016-12-15  Brouard Nicolas  <brouard@ined.fr>
   
         We had difficulties to get smoothed confidence intervals. It was due          * imach.c: Summary: 0.99 in progress
         to the period prevalence which wasn't computed accurately. The inner  
         parameter ftolpl is now an outer parameter of the .imach parameter  2016-09-15  Brouard Nicolas  <brouard@ined.fr>
         file after estepm. If ftolpl is small 1.e-4 and estepm too,  
         computation are long.          * imach.c: *** empty log message ***
   
         * version.h: *** empty log message ***          * imach.c: Summary: not working
   
         * imach.c: Summary: temporary  2016-09-08  Brouard Nicolas  <brouard@ined.fr>
   
 2015-10-27  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: continue
   
         * Makefile: *** empty log message ***  2016-09-07  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss.in: Summary: some new subdirs          * imach.c: Summary: Starting values from frequencies
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
         * setup.iss.in:  2016-09-02  Brouard Nicolas  <brouard@ined.fr>
         Summary: Adding gnuplot 5.1 with bin and etc for pango fonts  
           * imach.c: *** empty log message ***
 2015-10-24  Brouard Nicolas  <brouard@ined.fr>  
   2016-08-30  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * imach.c: Summary: Fixing a lots
 2015-10-23  Brouard Nicolas  <brouard@ined.fr>  
   2016-08-29  Brouard Nicolas  <brouard@ined.fr>
         * imach.c:  
         Summary: 0.98r3 some clarification for graphs on likelihood contributions          * imach.c: Summary: gnuplot problem in Back projection to fix
   
 2015-10-01  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Better
   
         * imach.c: Summary: Some new graphs of contribution to likelihood  2016-08-26  Brouard Nicolas  <brouard@ined.fr>
   
 2015-09-30  Brouard Nicolas  <brouard@ined.fr>          * imach.c:
           Summary: Improvement in Powell output in order to copy and paste
         * Makefile:  
         Summary: Version read from version.h, itself read with cmake          * imach.c: Summary: Starting tests of 0.99
   
         * imach.c: Summary: looking at better estimation of the hessian          * imach.c: Summary: to valgrind
   
         Also a better criteria for convergence to the period prevalence And  2016-08-25  Brouard Nicolas  <brouard@ined.fr>
         therefore adding the number of years needed to converge. (The  
         prevalence in any alive state shold sum to one          * imach.c: *** empty log message ***
   
         * Makefile: *** empty log message ***  2016-08-23  Brouard Nicolas  <brouard@ined.fr>
   
 2015-09-22  Brouard Nicolas  <brouard@ined.fr>          * imach.c: *** empty log message ***
   
         * imach.c:          * imach.c: Summary: not working
         Summary: Adding some overall graph on contribution to likelihood. Might change  
   2016-08-22  Brouard Nicolas  <brouard@ined.fr>
 2015-09-15  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: not working
         * Makefile: *** empty log message ***  
           * imach.c: Summary: Not working
         * imach.c: Summary: 0.98r0  
   2016-07-23  Brouard Nicolas  <brouard@ined.fr>
         - Some new graphs like survival functions  
         - Some bugs fixed like model=1+age+V2.          * imach.c: Summary: Completing for func too
   
         * ChangeLog, Makefile: Summary: 0.98r0  2016-07-22  Brouard Nicolas  <brouard@ined.fr>
   
         * CMakeLists.txt: Summary: Some tests for setup.iss          * imach.c: Summary: Fixing some arrays, still debugging
   
 2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  2016-07-21  Brouard Nicolas  <brouard@ined.fr>
   
         *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc          * imach.c:
           Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>  
   2016-07-12  Brouard Nicolas  <brouard@ined.fr>
         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.  
           * imach.c: Summary: temp
 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  
           * imach.c: Summary: saving but not running
         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)  
   2016-07-01  Brouard Nicolas  <brouard@ined.fr>
 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>  
           * imach.c: Summary: Fixes
         * imach.c (Module): Merging 1.61 to 1.162  
   2016-02-19  Brouard Nicolas  <brouard@ined.fr>
 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>  
           * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
         * prevlim.h (Module):  
           * setup.iss, Makefile, version.h: *** empty log message ***
 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>  
           * imach.c: Summary: temporary
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...  
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.  2016-02-17  Brouard Nicolas  <brouard@ined.fr>
   
 2010-04-29  brouard  <brouard@ined.fr>          * imach.c: Summary: Probably last 0.98 stable version 0.98r6
   
         * imach.c (Module): Checking covariates for more complex models  2016-02-16  Brouard Nicolas  <brouard@ined.fr>
         than V1+V2. A lot of change to be done. Unstable.  
           * imach.c: Summary: minor bug
 2010-04-26  brouard  <brouard@ined.fr>  
           * imach.c: Summary: 0.99r2
         * imach.c (Module): merging some libgsl code. Fixing computation  
         of likelione (using inter/intrapolation if mle = 0) in order to  2016-02-15  Brouard Nicolas  <brouard@ined.fr>
         get same likelihood as if mle=1.  
         Some cleaning of code and comments added.          * imach.c: *** empty log message ***
   
 2009-10-29  brouard  <brouard@ined.fr>  2016-02-12  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.          * imach.c: Summary: 0.99 Back projections
   
 2006-06-30  Brouard Nicolas  <brouard@localhost>  2015-12-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Clarifications on computing e.j          * imach.c: Summary: Experimental backcast
   
 2006-04-28  Brouard Nicolas  <brouard@localhost>  2015-12-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Yes the sum of survivors was wrong since          * imach.c: Summary: 0.98r4 Warning and status=-2
         imach-114 because nhstepm was no more computed in the age  
         loop. Now we define nhstepma in the age loop.          Version 0.98r4 is now:
         (Module): In order to speed up (in case of numerous covariates) we           - displaying an error when status is -1, date of interview unknown and date of death known;
         compute health expectancies (without variances) in a first step           - permitting a status -2 when the vital status is unknown at a known date of right truncation.
         and then all the health expectancies with variances or standard          Older changes concerning s=-2, dating from 2005 have been supersed.
         deviation (needs data from the Hessian matrices) which slows the  
         computation.          * Makefile: *** empty log message ***
         In the future we should be able to stop the program is only health  
         expectancies and graph are needed without standard deviations.  2015-12-16  Brouard Nicolas  <brouard@ined.fr>
   
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * Makefile: *** empty log message ***
   
         * imach.iss (Module):          * imach.c: Summary: 0.98r4 working
   
         * imach.c (Module): bugs in evsi + population file added in htm output file          * Makefile: Summary: linuxrpm added
   
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * Makefile: *** empty log message ***
   
         * imach.c (Module):          * imach.c: Summary: temporary not working
   
 2006-03-20  Brouard Nicolas  <brouard@localhost>  2015-12-11  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): <title> changed, corresponds to .htm file          * imach.c: Summary: 0.98r4
         name. <head> headers where missing.  
   2015-12-08  Brouard Nicolas  <brouard@ined.fr>
         * Makefile (Module): 0.98g  
           * Makefile: *** empty log message ***
         * imach.c (Module): Weights can have a decimal point as for  
         English (a comma might work with a correct LC_NUMERIC environment,  2015-11-21  Brouard Nicolas  <brouard@ined.fr>
         otherwise the weight is truncated).  
         Modification of warning when the covariates values are not 0 or          * Makefile:
         1.          Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
         Version 0.98g  
           * imach.c: Summary: minor typo
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
         * imach.c (Module): Comments concerning covariates added  
           Author: Nicolas Brouard
         * noreg-setup.iss (Module): Version 0.98f  
   2015-11-18  Brouard Nicolas  <brouard@ined.fr>
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup  
           * imach.c: Summary: Start working on projected prevalences
         * imach.c (Module): refinements in the computation of lli if  
         status=-2 in order to have more reliable computation if stepm is  2015-11-17  Brouard Nicolas  <brouard@ined.fr>
         not 1 month. Version 0.98f  
           * imach.c: Summary: Adding ftolpl parameter
 2006-03-15  Brouard Nicolas  <brouard@localhost>          Author: N Brouard
   
         * imach.c (Module): Bug if status = -2, the loglikelihood was          We had difficulties to get smoothed confidence intervals. It was due
         computed as likelihood omitting the logarithm. Version O.98e          to the period prevalence which wasn't computed accurately. The inner
           parameter ftolpl is now an outer parameter of the .imach parameter
 2006-03-14  Brouard Nicolas  <brouard@localhost>          file after estepm. If ftolpl is small 1.e-4 and estepm too,
           computation are long.
         * imach.c (Module): varevsij Comments added explaining the second  
         table of variances if popbased=1 .          * version.h: *** empty log message ***
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.  
         (Module): Function pstamp added          * imach.c: Summary: temporary
         (Module): Version 0.98d  
   2015-10-27  Brouard Nicolas  <brouard@ined.fr>
 2006-03-06  Brouard Nicolas  <brouard@localhost>  
           * Makefile: *** empty log message ***
         * imach.c (Module): Variance-covariance wrong links and  
         varian-covariance of ej. is needed (Saito).          * setup.iss.in: Summary: some new subdirs
   
 2006-02-27  Brouard Nicolas  <brouard@localhost>          * imach.c: *** empty log message ***
   
         * imach.c (Module): One freematrix added in mlikeli!          * setup.iss.in:
           Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
 2006-02-26  Brouard Nicolas  <brouard@localhost>  
   2015-10-24  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Some improvements in processing parameter  
         filename with strsep.          * imach.c: *** empty log message ***
   
 2006-02-24  Brouard Nicolas  <brouard@localhost>  2015-10-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Memory leaks checks with valgrind and:          * imach.c:
         datafile was not closed, some imatrix were not freed and on matrix          Summary: 0.98r3 some clarification for graphs on likelihood contributions
         allocation too.  
   2015-10-01  Brouard Nicolas  <brouard@ined.fr>
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * imach.c: Summary: Some new graphs of contribution to likelihood
         * strsep.c (Module): Inclusion because not in mingw32!!!  
   2015-09-30  Brouard Nicolas  <brouard@ined.fr>
         * setup.iss.in (Module): IMACHSETUPVERSION added  
           * Makefile:
         * noreg-setup.iss (Module): added to cvs tree          Summary: Version read from version.h, itself read with cmake
   
         * Makefile (Module): IMACHSETUPVERSION added          * imach.c: Summary: looking at better estimation of the hessian
   
 2006-01-30  BROUARD Nicolas  <brouard@localhost>          Also a better criteria for convergence to the period prevalence And
           therefore adding the number of years needed to converge. (The
         * Makefile (Module, Module): Latest Makefile          prevalence in any alive state shold sum to one
   
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe          * Makefile: *** empty log message ***
   
 2006-01-27  BROUARD Nicolas  <brouard@localhost>  2015-09-22  Brouard Nicolas  <brouard@ined.fr>
   
         * noreg-setup.iss (Module): ADDED          * imach.c:
           Summary: Adding some overall graph on contribution to likelihood. Might change
 2006-01-24  BROUARD Nicolas  <brouard@localhost>  
   2015-09-15  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.  
           * Makefile: *** empty log message ***
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>  
           * imach.c: Summary: 0.98r0
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg  
           - Some new graphs like survival functions
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X          - Some bugs fixed like model=1+age+V2.
   
 2005-09-30    <lievre@PC_00595>          * ChangeLog, Makefile: Summary: 0.98r0
   
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.          * CMakeLists.txt: Summary: Some tests for setup.iss
         (Module): If the status is missing at the last wave but we know  
         that the person is alive, then we can code his/her status as -2  2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         (instead of missing=-1 in earlier versions) and his/her  
         contributions to the likelihood is 1 - Prob of dying from last          *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
         health status (= 1-p13= p11+p12 in the easiest case of somebody in  
         the healthy state at last known wave). Version is 0.98  2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
   
 2004-05-20  Brouard Nicolas  <brouard@localhost>          *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
   
         * imach.c (Repository):  2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         Agnes added a direct estimation of mortality (without the need of  
         computing period prevalence and differential mortality). Thus here          *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
         is version 0.97a which has been distributed to some people at  
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of  2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
         mortality using covariates is not done today. Estimating direct  
         mortality is a very different process because it doesn't need          * imach.c (Module): Merging 1.61 to 1.162
         interpolation because it is easy to get the lx from the force of  
         the mortality mux in the simplest case as for a Gompertz (log mux  2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
         = a + b*x . But we have been able to incorporate the new code  
         within former imach program (0.96d) without deteriorating too much          * prevlim.h (Module): 
         the understanding of the program.  
   2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
 2003-06-25    <brouard@BROUARD>  
           * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't          (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
         exist so I changed back to asctime which exists.  
         (Module): Version 0.96b  2010-04-29  brouard  <brouard@ined.fr>
   
 2003-06-24    <brouard@BROUARD>          * imach.c (Module): Checking covariates for more complex models
           than V1+V2. A lot of change to be done. Unstable.
         * imach.c (Module): Some bugs corrected for windows. Also, when  
         mle=-1 a template is output in file "or"mypar.txt with the design  2010-04-26  brouard  <brouard@ined.fr>
         of the covariance matrix to be input.  
           * imach.c (Module): merging some libgsl code. Fixing computation
 2003-06-25  Brouard Nicolas  <brouard@homebrou>          of likelione (using inter/intrapolation if mle = 0) in order to
           get same likelihood as if mle=1.
         * imach.c (Repository): Duplicated warning errors corrected.          Some cleaning of code and comments added.
         (Repository): Elapsed time after each iteration is now output. It  
         helps to forecast when convergence will be reached. Elapsed time  2009-10-29  brouard  <brouard@ined.fr>
         is stamped in powell.  We created a new html file for the graphs  
         concerning matrix of covariance. It has extension -cov.htm.          * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
   
 2003-06-23  Brouard Nicolas  <brouard@homebrou>  2006-06-30  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.          * imach.c (Module): Clarifications on computing e.j
   
 2003-06-18  Brouard Nicolas  <brouard@homebrou>  2006-04-28  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96          * imach.c (Module): Yes the sum of survivors was wrong since
           imach-114 because nhstepm was no more computed in the age
 2003-06-17  Brouard Nicolas  <brouard@homebrou>          loop. Now we define nhstepma in the age loop.
           (Module): In order to speed up (in case of numerous covariates) we
           compute health expectancies (without variances) in a first step
         * imach.c (Repository): Check when date of death was earlier that          and then all the health expectancies with variances or standard
         current date of interview. It may happen when the death was just          deviation (needs data from the Hessian matrices) which slows the
         prior to the death. In this case, dh was negative and likelihood          computation.
         was wrong (infinity). We still send an "Error" but patch by          In the future we should be able to stop the program is only health
         assuming that the date of death was just one stepm after the          expectancies and graph are needed without standard deviations.
         interview.  
         (Repository): Because some people have very long ID (first column)  2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
         we changed int to long in num[] and we added a new lvector for  
         memory allocation. But we also truncated to 8 characters (left          * imach.iss (Module): 
         truncation)  
           * imach.c (Module): bugs in evsi + population file added in htm output file
         (Repository): No more line truncation errors.  
   2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
 2003-06-14  Brouard Nicolas  <brouard@homebrou>  
           * imach.c (Module): 
         * imach.c (Repository): Add of a routine likelione (likelihood  
         only once) which prints on a text file  2006-03-20  Brouard Nicolas  <brouard@localhost>
         (ilk) the contributions to the likelihood for each  
         individual/wave.          * imach.c (Module): <title> changed, corresponds to .htm file
           name. <head> headers where missing.
 2003-06-13  Brouard Nicolas  <brouard@homebrou>  
         * imach.c (Repository): Replace "freqsummary" at a correct          * Makefile (Module): 0.98g
         place. It differs from routine "prevalence" which may be called  
         many times. Probs is memory consuming and must be used with          * imach.c (Module): Weights can have a decimal point as for
         parcimony.          English (a comma might work with a correct LC_NUMERIC environment,
           otherwise the weight is truncated).
 2003-06-17    <brouard@BROUARD>          Modification of warning when the covariates values are not 0 or
           1. 
         * timeval.h (Module): Added included file to make use of          Version 0.98g
         gettimeofday working on win32 with cygwin.  
   2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
 2003-05-16  Brouard Nicolas  <brouard@brouard>  
         * imach.c (Module): Insert of a warning if the delay between two          * imach.c (Module): Comments concerning covariates added
         waves is negative.  
           * noreg-setup.iss (Module): Version 0.98f
         * imach.c (Module):  
           * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
 2003-05-03    <brouard@BROUARD>  
           * imach.c (Module): refinements in the computation of lli if
         * imach.c: Some cleaning          status=-2 in order to have more reliable computation if stepm is
           not 1 month. Version 0.98f
 2003-03-28    <brouard@BROUARD>  
         * imach.c (Module): In version up to 0.92 likelihood was computed  2006-03-15  Brouard Nicolas  <brouard@localhost>
         as if date of death was unknown. Death was treated as any other  
         health state: the date of the interview describes the actual state          * imach.c (Module): Bug if status = -2, the loglikelihood was
         and not the date of a change in health state. The former idea was          computed as likelihood omitting the logarithm. Version O.98e
         to consider that at each interview the state was recorded  
         (healthy, disable or death) and IMaCh was corrected; but when we  2006-03-14  Brouard Nicolas  <brouard@localhost>
         introduced the exact date of death then we should have modified  
         the contribution of an exact death to the likelihood. This new          * imach.c (Module): varevsij Comments added explaining the second
         contribution is smaller and very dependent of the step unit          table of variances if popbased=1 .
         stepm. It is no more the probability to die between last interview          (Module): Covariances of eij, ekl added, graphs fixed, new html link.
         and month of death but the probability to survive from last          (Module): Function pstamp added
         interview up to one month before death multiplied by the          (Module): Version 0.98d 
         probability to die within a month. Thanks to Chris  
         Jackson for correcting this bug.  Former versions increased  2006-03-06  Brouard Nicolas  <brouard@localhost>
         mortality artificially. The bad side is that we add another loop  
         which slows down the processing. The difference can be up to 10%          * imach.c (Module): Variance-covariance wrong links and
         lower mortality.          varian-covariance of ej. is needed (Saito).
   
 2002-05-30    <brouard@BROUARD>  2006-02-27  Brouard Nicolas  <brouard@localhost>
         *  
         * imach.c (Module): Add correlation matrix of one-step          * imach.c (Module): One freematrix added in mlikeli!
         probabilities and covariance matrix  
   2006-02-26  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Some improvements in processing parameter
           filename with strsep.
   
   2006-02-24  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Memory leaks checks with valgrind and:
           datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
   
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * strsep.c (Module): Inclusion because not in mingw32!!!
   
           * setup.iss.in (Module): IMACHSETUPVERSION added
   
           * noreg-setup.iss (Module): added to cvs tree
   
           * Makefile (Module): IMACHSETUPVERSION added
   
   2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
           * Makefile (Module, Module): Latest Makefile
   
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
           * noreg-setup.iss (Module): ADDED
   
   2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
           * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
   2005-09-30    <lievre@PC_00595>
   
           * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
           that the person is alive, then we can code his/her status as -2
           (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
           health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98 
   
   2004-05-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Repository): 
           Agnes added a direct estimation of mortality (without the need of
           computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
           REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
           mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
           the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
           within former imach program (0.96d) without deteriorating too much
           the understanding of the program. 
   
   2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module): 
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
           which slows down the processing. The difference can be up to 10%
           lower mortality.
   
   2002-05-30    <brouard@BROUARD>
   
           * imach.c (Module): Add correlation matrix of one-step
           probabilities and covariance matrix
   

Removed from v.1.46  
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  Added in v.1.67


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