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Wed Apr 13 17:52:55 2022 UTC (2 years, 1 month ago) by brouard
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Summary: r27

1: 2022-04-13 Brouard Nicolas <brouard@brouard.name> 2: 3: * imach.c (Module): Adding link to text data files 4: 5: 2022-04-11 Nicolas Brouard <brouard@ined.fr> 6: 7: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed 8: 9: 2022-04-05 Brouard Nicolas <brouard@ined.fr> 10: 11: * imach.c (Module): Fixed covariates (dummy or quantitative) 12: with missing values have never been allowed but are ERRORS and 13: program quits. Standard deviations of fixed covariates were 14: wrongly computed. Mean and standard deviations of time varying 15: covariates are still not computed. 16: 17: 2022-03-17 Brouard Nicolas <brouard@ined.fr> 18: 19: * 99r25 Improvements in fixing discrepancies between covariates 20: missing in result line but in model. 21: 22: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr> 23: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett 24: 25: *2021-03-08 Nicolas Brouard <brouard@ined.fr> 26: 27: * ./ (Module): Fixed bug on result: 28: 29: *2021-02-20 Nicolas Brouard <brouard@ined.fr> 30: 31: * imach.c (Module): Fix bug on quitting after result lines! 32: (Module): Version 0.99r21 33: 34: 2021-02-12 Nicolas Brouard <brouard@ined.fr> 35: 36: * imach.c (Module): The use of a Windows BOM (huge) file is now an error 37: 38: 39: 2021-02-11 Nicolas Brouard <brouard@ined.fr> 40: 41: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed. 42: 43: 2020-02-22 Brouard Nicolas <brouard@ined.fr> 44: 45: * (Module): imach.c Update mle=-3 (for computing Life expectancy 46: and life table from the data without any state) 47: 48: 2019-05-20 Brouard Nicolas <brouard@ined.fr> 49: 50: * version.h: Summary: version 0.99.r19 51: 52: * imach.c: Summary: Projection syntax simplified 53: We can now start projections, forward or backward, from the mean date 54: of inteviews up to or down to a number of years of projection: 55: prevforecast=1 yearsfproj=15.3 mobil_average=0 56: or 57: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0 58: or 59: prevbackcast=1 yearsbproj=12.3 mobil_average=1 60: or 61: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1 62: 63: 2019-05-18 Brouard Nicolas <brouard@ined.fr> 64: 65: * imach.c: Summary: doxygen tex bug 66: 67: 2019-05-16 Brouard Nicolas <brouard@ined.fr> 68: 69: * imach.c: Summary: There was some wrong lines added 70: 71: 2019-05-09 Brouard Nicolas <brouard@ined.fr> 72: 73: * Makefile, imach.c: *** empty log message *** 74: 75: * ChangeLog: Summary: C= 76: 77: * imach.c: Summary: Some updates 78: 79: * imach.c: Summary: Before ncovmax 80: 81: * version.h: *** empty log message *** 82: 83: * imach.c: Summary: 0.99r18 unlimited number of individuals 84: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur. 85: 86: 2018-12-13 Brouard Nicolas <brouard@ined.fr> 87: 88: * imach.c: Summary: Bug for young ages (<-30) will be in r17 89: 90: 2018-12-05 Brouard Nicolas <brouard@ined.fr> 91: 92: * Makefile: Summary: 0.99r16 93: 94: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 95: 96: * imach.c: Summary: Some bugs fixed 97: 98: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 99: 100: * imach.c: Summary: Bug for young ages (<-30) will be in r17 101: 102: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 103: 104: * imach.c: Summary: Some bugs fixed 105: 106: 2018-05-01 Brouard Nicolas <brouard@ined.fr> 107: 108: * imach.c: 109: Summary: Bug fixed by providing frequencies only for non missing covariates 110: 111: 2018-04-27 Brouard Nicolas <brouard@ined.fr> 112: 113: * imach.c: Summary: some minor bugs 114: 115: 2018-04-21 Brouard Nicolas <brouard@ined.fr> 116: 117: * README.txt: *** empty log message *** 118: 119: * imach.c: Summary: Some bugs fixed, valgrind tested 120: 121: 2018-04-20 Brouard Nicolas <brouard@ined.fr> 122: 123: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16 124: 125: * imach.c: 126: Summary: Computing mean and stdeviation of fixed quantitative variables 127: 128: 2018-04-19 Brouard Nicolas <brouard@ined.fr> 129: 130: * imach.c: Summary: Some minor bugs fixed 131: 132: * version.h: *** empty log message *** 133: 134: 2018-02-27 Brouard Nicolas <brouard@ined.fr> 135: 136: * imach.c: *** empty log message *** 137: 138: * imach.c: Summary: Adding second argument for quitting 139: 140: 2018-02-21 Brouard Nicolas <brouard@ined.fr> 141: 142: * Makefile, README.txt, imach.c: Summary: 0.99r15 143: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c 144: 145: 2017-07-20 Brouard Nicolas <brouard@ined.fr> 146: 147: * imach.c: Summary: temporary working 148: 149: 2017-07-19 Brouard Nicolas <brouard@ined.fr> 150: 151: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?) 152: 153: 2017-07-17 Brouard Nicolas <brouard@ined.fr> 154: 155: * imach.c: Summary: BOM files can be read now 156: 157: 2017-06-30 Brouard Nicolas <brouard@ined.fr> 158: 159: * imach.c: Summary: Graphs improvements 160: 161: * imach.c: Summary: Saito's color 162: 163: 2017-06-29 Brouard Nicolas <brouard@ined.fr> 164: 165: * imach.c: Summary: Version 0.99r14 166: 167: 2017-06-27 Brouard Nicolas <brouard@ined.fr> 168: 169: * imach.c: Summary: More documentation on projections 170: 171: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow) 172: 173: * imach.c: Summary: Some bug with rint 174: 175: 2017-05-24 Brouard Nicolas <brouard@ined.fr> 176: 177: * imach.c: *** empty log message *** 178: 179: 2017-05-23 Brouard Nicolas <brouard@ined.fr> 180: 181: * imach.c: Summary: Code into subroutine, cleanings 182: 183: 2017-05-18 Brouard Nicolas <brouard@ined.fr> 184: 185: * imach.c: 186: Summary: backprojection and confidence intervals of backprevalence 187: 188: 2017-05-13 Brouard Nicolas <brouard@ined.fr> 189: 190: * imach.c: Summary: temporary save for backprojection 191: 192: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed) 193: 194: 2017-04-26 Brouard Nicolas <brouard@ined.fr> 195: 196: * imach.c: Summary: imach 0.99r13 Some bugs fixed 197: 198: * imach.c: Summary: Labels in graphs 199: 200: 2017-04-24 Brouard Nicolas <brouard@ined.fr> 201: 202: * imach.c: Summary: to save 203: 204: 2017-04-18 Brouard Nicolas <brouard@ined.fr> 205: 206: * imach.c: *** empty log message *** 207: 208: 2017-04-05 Brouard Nicolas <brouard@ined.fr> 209: 210: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1 211: 212: 2017-04-04 Brouard Nicolas <brouard@ined.fr> 213: 214: * imach.c: Summary: Gnuplot indexations fixed (humm) 215: 216: * imach.c: 217: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3 218: 219: 2017-04-03 Brouard Nicolas <brouard@ined.fr> 220: 221: * imach.c: Summary: Version 0.99r12 222: Some cleanings, conformed with updated documentation. 223: 224: 2017-03-30 Brouard Nicolas <brouard@ined.fr> 225: 226: * version.h: *** empty log message *** 227: 228: * version.h: Summary:0.99r11 229: 230: 2017-03-29 Brouard Nicolas <brouard@ined.fr> 231: 232: * imach.c: Summary: Temp 233: 234: 2017-03-27 Brouard Nicolas <brouard@ined.fr> 235: 236: * imach.c: Summary: Temporary 237: 238: 2017-03-08 Brouard Nicolas <brouard@ined.fr> 239: 240: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed 241: 242: * imach.c: Summary: Fixing data parameter line 243: 244: 2016-12-15 Brouard Nicolas <brouard@ined.fr> 245: 246: * imach.c: Summary: 0.99 in progress 247: 248: 2016-09-15 Brouard Nicolas <brouard@ined.fr> 249: 250: * imach.c: *** empty log message *** 251: 252: * imach.c: Summary: not working 253: 254: 2016-09-08 Brouard Nicolas <brouard@ined.fr> 255: 256: * imach.c: Summary: continue 257: 258: 2016-09-07 Brouard Nicolas <brouard@ined.fr> 259: 260: * imach.c: Summary: Starting values from frequencies 261: 262: * imach.c: *** empty log message *** 263: 264: 2016-09-02 Brouard Nicolas <brouard@ined.fr> 265: 266: * imach.c: *** empty log message *** 267: 268: 2016-08-30 Brouard Nicolas <brouard@ined.fr> 269: 270: * imach.c: Summary: Fixing a lots 271: 272: 2016-08-29 Brouard Nicolas <brouard@ined.fr> 273: 274: * imach.c: Summary: gnuplot problem in Back projection to fix 275: 276: * imach.c: Summary: Better 277: 278: 2016-08-26 Brouard Nicolas <brouard@ined.fr> 279: 280: * imach.c: 281: Summary: Improvement in Powell output in order to copy and paste 282: 283: * imach.c: Summary: Starting tests of 0.99 284: 285: * imach.c: Summary: to valgrind 286: 287: 2016-08-25 Brouard Nicolas <brouard@ined.fr> 288: 289: * imach.c: *** empty log message *** 290: 291: 2016-08-23 Brouard Nicolas <brouard@ined.fr> 292: 293: * imach.c: *** empty log message *** 294: 295: * imach.c: Summary: not working 296: 297: 2016-08-22 Brouard Nicolas <brouard@ined.fr> 298: 299: * imach.c: Summary: not working 300: 301: * imach.c: Summary: Not working 302: 303: 2016-07-23 Brouard Nicolas <brouard@ined.fr> 304: 305: * imach.c: Summary: Completing for func too 306: 307: 2016-07-22 Brouard Nicolas <brouard@ined.fr> 308: 309: * imach.c: Summary: Fixing some arrays, still debugging 310: 311: 2016-07-21 Brouard Nicolas <brouard@ined.fr> 312: 313: * imach.c: 314: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods 315: 316: 2016-07-12 Brouard Nicolas <brouard@ined.fr> 317: 318: * imach.c: Summary: temp 319: 320: * imach.c: Summary: saving but not running 321: 322: 2016-07-01 Brouard Nicolas <brouard@ined.fr> 323: 324: * imach.c: Summary: Fixes 325: 326: 2016-02-19 Brouard Nicolas <brouard@ined.fr> 327: 328: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7 329: 330: * setup.iss, Makefile, version.h: *** empty log message *** 331: 332: * imach.c: Summary: temporary 333: 334: 2016-02-17 Brouard Nicolas <brouard@ined.fr> 335: 336: * imach.c: Summary: Probably last 0.98 stable version 0.98r6 337: 338: 2016-02-16 Brouard Nicolas <brouard@ined.fr> 339: 340: * imach.c: Summary: minor bug 341: 342: * imach.c: Summary: 0.99r2 343: 344: 2016-02-15 Brouard Nicolas <brouard@ined.fr> 345: 346: * imach.c: *** empty log message *** 347: 348: 2016-02-12 Brouard Nicolas <brouard@ined.fr> 349: 350: * imach.c: Summary: 0.99 Back projections 351: 352: 2015-12-23 Brouard Nicolas <brouard@ined.fr> 353: 354: * imach.c: Summary: Experimental backcast 355: 356: 2015-12-18 Brouard Nicolas <brouard@ined.fr> 357: 358: * imach.c: Summary: 0.98r4 Warning and status=-2 359: 360: Version 0.98r4 is now: 361: - displaying an error when status is -1, date of interview unknown and date of death known; 362: - permitting a status -2 when the vital status is unknown at a known date of right truncation. 363: Older changes concerning s=-2, dating from 2005 have been supersed. 364: 365: * Makefile: *** empty log message *** 366: 367: 2015-12-16 Brouard Nicolas <brouard@ined.fr> 368: 369: * Makefile: *** empty log message *** 370: 371: * imach.c: Summary: 0.98r4 working 372: 373: * Makefile: Summary: linuxrpm added 374: 375: * Makefile: *** empty log message *** 376: 377: * imach.c: Summary: temporary not working 378: 379: 2015-12-11 Brouard Nicolas <brouard@ined.fr> 380: 381: * imach.c: Summary: 0.98r4 382: 383: 2015-12-08 Brouard Nicolas <brouard@ined.fr> 384: 385: * Makefile: *** empty log message *** 386: 387: 2015-11-21 Brouard Nicolas <brouard@ined.fr> 388: 389: * Makefile: 390: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more 391: 392: * imach.c: Summary: minor typo 393: 394: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional 395: 396: Author: Nicolas Brouard 397: 398: 2015-11-18 Brouard Nicolas <brouard@ined.fr> 399: 400: * imach.c: Summary: Start working on projected prevalences 401: 402: 2015-11-17 Brouard Nicolas <brouard@ined.fr> 403: 404: * imach.c: Summary: Adding ftolpl parameter 405: Author: N Brouard 406: 407: We had difficulties to get smoothed confidence intervals. It was due 408: to the period prevalence which wasn't computed accurately. The inner 409: parameter ftolpl is now an outer parameter of the .imach parameter 410: file after estepm. If ftolpl is small 1.e-4 and estepm too, 411: computation are long. 412: 413: * version.h: *** empty log message *** 414: 415: * imach.c: Summary: temporary 416: 417: 2015-10-27 Brouard Nicolas <brouard@ined.fr> 418: 419: * Makefile: *** empty log message *** 420: 421: * setup.iss.in: Summary: some new subdirs 422: 423: * imach.c: *** empty log message *** 424: 425: * setup.iss.in: 426: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts 427: 428: 2015-10-24 Brouard Nicolas <brouard@ined.fr> 429: 430: * imach.c: *** empty log message *** 431: 432: 2015-10-23 Brouard Nicolas <brouard@ined.fr> 433: 434: * imach.c: 435: Summary: 0.98r3 some clarification for graphs on likelihood contributions 436: 437: 2015-10-01 Brouard Nicolas <brouard@ined.fr> 438: 439: * imach.c: Summary: Some new graphs of contribution to likelihood 440: 441: 2015-09-30 Brouard Nicolas <brouard@ined.fr> 442: 443: * Makefile: 444: Summary: Version read from version.h, itself read with cmake 445: 446: * imach.c: Summary: looking at better estimation of the hessian 447: 448: Also a better criteria for convergence to the period prevalence And 449: therefore adding the number of years needed to converge. (The 450: prevalence in any alive state shold sum to one 451: 452: * Makefile: *** empty log message *** 453: 454: 2015-09-22 Brouard Nicolas <brouard@ined.fr> 455: 456: * imach.c: 457: Summary: Adding some overall graph on contribution to likelihood. Might change 458: 459: 2015-09-15 Brouard Nicolas <brouard@ined.fr> 460: 461: * Makefile: *** empty log message *** 462: 463: * imach.c: Summary: 0.98r0 464: 465: - Some new graphs like survival functions 466: - Some bugs fixed like model=1+age+V2. 467: 468: * ChangeLog, Makefile: Summary: 0.98r0 469: 470: * CMakeLists.txt: Summary: Some tests for setup.iss 471: 472: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr> 473: 474: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc 475: 476: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local> 477: 478: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line. 479: 480: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr> 481: 482: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih) 483: 484: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local> 485: 486: * imach.c (Module): Merging 1.61 to 1.162 487: 488: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr> 489: 490: * prevlim.h (Module): 491: 492: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local> 493: 494: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... 495: (Module): Version 0.98nR Running ok, but output format still only works for three covariates. 496: 497: 2010-04-29 brouard <brouard@ined.fr> 498: 499: * imach.c (Module): Checking covariates for more complex models 500: than V1+V2. A lot of change to be done. Unstable. 501: 502: 2010-04-26 brouard <brouard@ined.fr> 503: 504: * imach.c (Module): merging some libgsl code. Fixing computation 505: of likelione (using inter/intrapolation if mle = 0) in order to 506: get same likelihood as if mle=1. 507: Some cleaning of code and comments added. 508: 509: 2009-10-29 brouard <brouard@ined.fr> 510: 511: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code. 512: 513: 2006-06-30 Brouard Nicolas <brouard@localhost> 514: 515: * imach.c (Module): Clarifications on computing e.j 516: 517: 2006-04-28 Brouard Nicolas <brouard@localhost> 518: 519: * imach.c (Module): Yes the sum of survivors was wrong since 520: imach-114 because nhstepm was no more computed in the age 521: loop. Now we define nhstepma in the age loop. 522: (Module): In order to speed up (in case of numerous covariates) we 523: compute health expectancies (without variances) in a first step 524: and then all the health expectancies with variances or standard 525: deviation (needs data from the Hessian matrices) which slows the 526: computation. 527: In the future we should be able to stop the program is only health 528: expectancies and graph are needed without standard deviations. 529: 530: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr> 531: 532: * imach.iss (Module): 533: 534: * imach.c (Module): bugs in evsi + population file added in htm output file 535: 536: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr> 537: 538: * imach.c (Module): 539: 540: 2006-03-20 Brouard Nicolas <brouard@localhost> 541: 542: * imach.c (Module): <title> changed, corresponds to .htm file 543: name. <head> headers where missing. 544: 545: * Makefile (Module): 0.98g 546: 547: * imach.c (Module): Weights can have a decimal point as for 548: English (a comma might work with a correct LC_NUMERIC environment, 549: otherwise the weight is truncated). 550: Modification of warning when the covariates values are not 0 or 551: 1. 552: Version 0.98g 553: 554: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr> 555: 556: * imach.c (Module): Comments concerning covariates added 557: 558: * noreg-setup.iss (Module): Version 0.98f 559: 560: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup 561: 562: * imach.c (Module): refinements in the computation of lli if 563: status=-2 in order to have more reliable computation if stepm is 564: not 1 month. Version 0.98f 565: 566: 2006-03-15 Brouard Nicolas <brouard@localhost> 567: 568: * imach.c (Module): Bug if status = -2, the loglikelihood was 569: computed as likelihood omitting the logarithm. Version O.98e 570: 571: 2006-03-14 Brouard Nicolas <brouard@localhost> 572: 573: * imach.c (Module): varevsij Comments added explaining the second 574: table of variances if popbased=1 . 575: (Module): Covariances of eij, ekl added, graphs fixed, new html link. 576: (Module): Function pstamp added 577: (Module): Version 0.98d 578: 579: 2006-03-06 Brouard Nicolas <brouard@localhost> 580: 581: * imach.c (Module): Variance-covariance wrong links and 582: varian-covariance of ej. is needed (Saito). 583: 584: 2006-02-27 Brouard Nicolas <brouard@localhost> 585: 586: * imach.c (Module): One freematrix added in mlikeli! 587: 588: 2006-02-26 Brouard Nicolas <brouard@localhost> 589: 590: * imach.c (Module): Some improvements in processing parameter 591: filename with strsep. 592: 593: 2006-02-24 Brouard Nicolas <brouard@localhost> 594: 595: * imach.c (Module): Memory leaks checks with valgrind and: 596: datafile was not closed, some imatrix were not freed and on matrix 597: allocation too. 598: 599: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr> 600: 601: * strsep.c (Module): Inclusion because not in mingw32!!! 602: 603: * setup.iss.in (Module): IMACHSETUPVERSION added 604: 605: * noreg-setup.iss (Module): added to cvs tree 606: 607: * Makefile (Module): IMACHSETUPVERSION added 608: 609: 2006-01-30 BROUARD Nicolas <brouard@localhost> 610: 611: * Makefile (Module, Module): Latest Makefile 612: 613: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe 614: 615: 2006-01-27 BROUARD Nicolas <brouard@localhost> 616: 617: * noreg-setup.iss (Module): ADDED 618: 619: 2006-01-24 BROUARD Nicolas <brouard@localhost> 620: 621: * imach.c (Module): Comments (lines starting with a #) are allowed in data. 622: 623: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr> 624: 625: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg 626: 627: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X 628: 629: 2005-09-30 <lievre@PC_00595> 630: 631: * imach.c (Module): sump fixed, loop imx fixed, and simplifications. 632: (Module): If the status is missing at the last wave but we know 633: that the person is alive, then we can code his/her status as -2 634: (instead of missing=-1 in earlier versions) and his/her 635: contributions to the likelihood is 1 - Prob of dying from last 636: health status (= 1-p13= p11+p12 in the easiest case of somebody in 637: the healthy state at last known wave). Version is 0.98 638: 639: 2004-05-20 Brouard Nicolas <brouard@localhost> 640: 641: * imach.c (Repository): 642: Agnes added a direct estimation of mortality (without the need of 643: computing period prevalence and differential mortality). Thus here 644: is version 0.97a which has been distributed to some people at 645: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of 646: mortality using covariates is not done today. Estimating direct 647: mortality is a very different process because it doesn't need 648: interpolation because it is easy to get the lx from the force of 649: the mortality mux in the simplest case as for a Gompertz (log mux 650: = a + b*x . But we have been able to incorporate the new code 651: within former imach program (0.96d) without deteriorating too much 652: the understanding of the program. 653: 654: 2003-06-25 <brouard@BROUARD> 655: 656: * imach.c (Module): On windows (cygwin) function asctime_r doesn't 657: exist so I changed back to asctime which exists. 658: (Module): Version 0.96b 659: 660: 2003-06-24 <brouard@BROUARD> 661: 662: * imach.c (Module): Some bugs corrected for windows. Also, when 663: mle=-1 a template is output in file "or"mypar.txt with the design 664: of the covariance matrix to be input. 665: 666: 2003-06-25 Brouard Nicolas <brouard@homebrou> 667: 668: * imach.c (Repository): Duplicated warning errors corrected. 669: (Repository): Elapsed time after each iteration is now output. It 670: helps to forecast when convergence will be reached. Elapsed time 671: is stamped in powell. We created a new html file for the graphs 672: concerning matrix of covariance. It has extension -cov.htm. 673: 674: 2003-06-23 Brouard Nicolas <brouard@homebrou> 675: 676: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things. 677: 678: 2003-06-18 Brouard Nicolas <brouard@homebrou> 679: 680: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96 681: 682: 2003-06-17 Brouard Nicolas <brouard@homebrou> 683: 684: 685: * imach.c (Repository): Check when date of death was earlier that 686: current date of interview. It may happen when the death was just 687: prior to the death. In this case, dh was negative and likelihood 688: was wrong (infinity). We still send an "Error" but patch by 689: assuming that the date of death was just one stepm after the 690: interview. 691: (Repository): Because some people have very long ID (first column) 692: we changed int to long in num[] and we added a new lvector for 693: memory allocation. But we also truncated to 8 characters (left 694: truncation) 695: 696: (Repository): No more line truncation errors. 697: 698: 2003-06-14 Brouard Nicolas <brouard@homebrou> 699: 700: * imach.c (Repository): Add of a routine likelione (likelihood 701: only once) which prints on a text file 702: (ilk) the contributions to the likelihood for each 703: individual/wave. 704: 705: 2003-06-13 Brouard Nicolas <brouard@homebrou> 706: * imach.c (Repository): Replace "freqsummary" at a correct 707: place. It differs from routine "prevalence" which may be called 708: many times. Probs is memory consuming and must be used with 709: parcimony. 710: 711: 2003-06-17 <brouard@BROUARD> 712: 713: * timeval.h (Module): Added included file to make use of 714: gettimeofday working on win32 with cygwin. 715: 716: 2003-05-16 Brouard Nicolas <brouard@brouard> 717: * imach.c (Module): Insert of a warning if the delay between two 718: waves is negative. 719: 720: * imach.c (Module): 721: 722: 2003-05-03 <brouard@BROUARD> 723: 724: * imach.c: Some cleaning 725: 726: 2003-03-28 <brouard@BROUARD> 727: * imach.c (Module): In version up to 0.92 likelihood was computed 728: as if date of death was unknown. Death was treated as any other 729: health state: the date of the interview describes the actual state 730: and not the date of a change in health state. The former idea was 731: to consider that at each interview the state was recorded 732: (healthy, disable or death) and IMaCh was corrected; but when we 733: introduced the exact date of death then we should have modified 734: the contribution of an exact death to the likelihood. This new 735: contribution is smaller and very dependent of the step unit 736: stepm. It is no more the probability to die between last interview 737: and month of death but the probability to survive from last 738: interview up to one month before death multiplied by the 739: probability to die within a month. Thanks to Chris 740: Jackson for correcting this bug. Former versions increased 741: mortality artificially. The bad side is that we add another loop 742: which slows down the processing. The difference can be up to 10% 743: lower mortality. 744: 745: 2002-05-30 <brouard@BROUARD> 746: * 747: * imach.c (Module): Add correlation matrix of one-step 748: probabilities and covariance matrix 749: 750: 751: 752: 753: