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Diff for /imach/src/imach.c between versions 1.14 and 1.15

version 1.14, 2002/02/20 17:05:44 version 1.15, 2002/02/20 17:08:52
Line 73  int npar=NPARMAX; Line 73  int npar=NPARMAX;
 int nlstate=2; /* Number of live states */  int nlstate=2; /* Number of live states */
 int ndeath=1; /* Number of dead states */  int ndeath=1; /* Number of dead states */
 int ncovmodel, ncov;     /* Total number of covariables including constant a12*1 +b12*x ncovmodel=2 */  int ncovmodel, ncov;     /* Total number of covariables including constant a12*1 +b12*x ncovmodel=2 */
 int popbased=0, fprev,lprev;  int popbased=0;
   
 int *wav; /* Number of waves for this individuual 0 is possible */  int *wav; /* Number of waves for this individuual 0 is possible */
 int maxwav; /* Maxim number of waves */  int maxwav; /* Maxim number of waves */
Line 1150  void lubksb(double **a, int n, int *indx Line 1150  void lubksb(double **a, int n, int *indx
 }  }
   
 /************ Frequencies ********************/  /************ Frequencies ********************/
 void  freqsummary(char fileres[], int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax)  void  freqsummary(char fileres[], int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax, int fprev1,int lprev1)
 {  /* Some frequencies */  {  /* Some frequencies */
     
   int i, m, jk, k1, i1, j1, bool, z1,z2,j;    int i, m, jk, k1, i1, j1, bool, z1,z2,j;
Line 1192  void  freqsummary(char fileres[], int ag Line 1192  void  freqsummary(char fileres[], int ag
                bool=0;                 bool=0;
          }           }
           if (bool==1) {            if (bool==1) {
            for(m=fprev; m<=lprev; m++){             for(m=fprev1; m<=lprev1; m++){
              if(agev[m][i]==0) agev[m][i]=agemax+1;               if(agev[m][i]==0) agev[m][i]=agemax+1;
              if(agev[m][i]==1) agev[m][i]=agemax+2;               if(agev[m][i]==1) agev[m][i]=agemax+2;
              freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i];               freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i];
Line 1265  void  freqsummary(char fileres[], int ag Line 1265  void  freqsummary(char fileres[], int ag
   
 }  /* End of Freq */  }  /* End of Freq */
   
   /************ Prevalence ********************/
   void prevalence(int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax, int fprev1,int lprev1)
   {  /* Some frequencies */
    
     int i, m, jk, k1, i1, j1, bool, z1,z2,j;
     double ***freq; /* Frequencies */
     double *pp;
     double pos;
   
     pp=vector(1,nlstate);
     probs= ma3x(1,130 ,1,8, 1,8);
    
     freq=ma3x(-1,nlstate+ndeath,-1,nlstate+ndeath,agemin,agemax+3);
     j1=0;
    
     j=cptcoveff;
     if (cptcovn<1) {j=1;ncodemax[1]=1;}
    
    for(k1=1; k1<=j;k1++){
       for(i1=1; i1<=ncodemax[k1];i1++){
         j1++;
    
         for (i=-1; i<=nlstate+ndeath; i++)  
           for (jk=-1; jk<=nlstate+ndeath; jk++)  
             for(m=agemin; m <= agemax+3; m++)
             freq[i][jk][m]=0;
        
         for (i=1; i<=imx; i++) {
           bool=1;
           if  (cptcovn>0) {
             for (z1=1; z1<=cptcoveff; z1++)
               if (covar[Tvaraff[z1]][i]!= nbcode[Tvaraff[z1]][codtab[j1][z1]])
                 bool=0;
                 }
           if (bool==1) {
             for(m=fprev1; m<=lprev1; m++){
               if(agev[m][i]==0) agev[m][i]=agemax+1;
               if(agev[m][i]==1) agev[m][i]=agemax+2;
               freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i];
               freq[s[m][i]][s[m+1][i]][(int) agemax+3] += weight[i];
             }
           }
         }
          for(i=(int)agemin; i <= (int)agemax+3; i++){
           for(jk=1; jk <=nlstate ; jk++){
             for(m=-1, pp[jk]=0; m <=nlstate+ndeath ; m++)
               pp[jk] += freq[jk][m][i];
           }
           for(jk=1; jk <=nlstate ; jk++){
             for(m=-1, pos=0; m <=0 ; m++)
               pos += freq[jk][m][i];
           }
          
            for(jk=1; jk <=nlstate ; jk++){
              for(m=0, pp[jk]=0; m <=nlstate+ndeath; m++)
                pp[jk] += freq[jk][m][i];
            }
            
            for(jk=1,pos=0; jk <=nlstate ; jk++) pos += pp[jk];
   
            for(jk=1; jk <=nlstate ; jk++){          
              if( i <= (int) agemax){
                if(pos>=1.e-5){
                  probs[i][jk][j1]= pp[jk]/pos;
                }
              }
            }
            
            }
       }
     }
    
    
     free_ma3x(freq,-1,nlstate+ndeath,-1,nlstate+ndeath,(int) agemin,(int) agemax+3);
     free_vector(pp,1,nlstate);
    
   }  /* End of Freq */
 /************* Waves Concatenation ***************/  /************* Waves Concatenation ***************/
   
 void  concatwav(int wav[], int **dh, int **mw, int **s, double *agedc, double **agev, int  firstpass, int lastpass, int imx, int nlstate, int stepm)  void  concatwav(int wav[], int **dh, int **mw, int **s, double *agedc, double **agev, int  firstpass, int lastpass, int imx, int nlstate, int stepm)
Line 1790  int main() Line 1867  int main()
   int ju,jl, mi;    int ju,jl, mi;
   int i1,j1, k1,k2,k3,jk,aa,bb, stepsize, ij;    int i1,j1, k1,k2,k3,jk,aa,bb, stepsize, ij;
   int jnais,jdc,jint4,jint1,jint2,jint3,**outcome,**adl,*tab;    int jnais,jdc,jint4,jint1,jint2,jint3,**outcome,**adl,*tab;
   int mobilav=0, fprevfore=1, lprevfore=1;    int mobilav=0, fprev, lprev ,fprevfore=1, lprevfore=1,nforecast;
   int hstepm, nhstepm;    int hstepm, nhstepm;
   
   double bage, fage, age, agelim, agebase;    double bage, fage, age, agelim, agebase;
Line 1886  while((c=getc(ficpar))=='#' && c!= EOF){ Line 1963  while((c=getc(ficpar))=='#' && c!= EOF){
   }    }
   ungetc(c,ficpar);    ungetc(c,ficpar);
     
   fscanf(ficpar,"fprevalence=%d lprevalence=%d mob_average=%d\n",&fprevfore,&lprevfore,&mobilav);    fscanf(ficpar,"fprevalence=%d lprevalence=%d nforecast=%d mob_average=%d\n",&fprevfore,&lprevfore,&nforecast,&mobilav);
     
   covar=matrix(0,NCOVMAX,1,n);    covar=matrix(0,NCOVMAX,1,n);
   cptcovn=0;    cptcovn=0;
Line 2241  printf("Total number of individuals= %d, Line 2318  printf("Total number of individuals= %d,
         
    /* Calculates basic frequencies. Computes observed prevalence at single age     /* Calculates basic frequencies. Computes observed prevalence at single age
        and prints on file fileres'p'. */         and prints on file fileres'p'. */
   freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax);    freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax, fprev, lprev);
   
     pmmij= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */      pmmij= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
     oldms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */      oldms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
Line 2505  ij=1; Line 2582  ij=1;
   fclose(ficgp);    fclose(ficgp);
         
 chdir(path);  chdir(path);
     free_matrix(agev,1,maxwav,1,imx);     
     free_ivector(wav,1,imx);      free_ivector(wav,1,imx);
     free_imatrix(dh,1,lastpass-firstpass+1,1,imx);      free_imatrix(dh,1,lastpass-firstpass+1,1,imx);
     free_imatrix(mw,1,lastpass-firstpass+1,1,imx);      free_imatrix(mw,1,lastpass-firstpass+1,1,imx);  
      
     free_imatrix(s,1,maxwav+1,1,n);  
      
      
     free_ivector(num,1,n);      free_ivector(num,1,n);
     free_vector(agedc,1,n);      free_vector(agedc,1,n);
     free_vector(weight,1,n);  
     /*free_matrix(covar,1,NCOVMAX,1,n);*/      /*free_matrix(covar,1,NCOVMAX,1,n);*/
     fclose(ficparo);      fclose(ficparo);
     fclose(ficres);      fclose(ficres);
Line 2709  fclose(fichtm); Line 2781  fclose(fichtm);
   }    }
   printf("Computing forecasting: result on file '%s' \n", fileresf);    printf("Computing forecasting: result on file '%s' \n", fileresf);
   
   /* Mobile average */    prevalence(agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax, fprevfore, lprevfore);
   
   /* for (agedeb=bage; agedeb<=fage; agedeb++)   free_matrix(agev,1,maxwav,1,imx);
     for (i=1; i<=nlstate;i++)    /* Mobile average */
       for (cptcod=1;cptcod<=ncodemax[cptcoveff];cptcod++)  
       printf("%f %d i=%d j1=%d\n", probs[(int)agedeb][i][cptcod],(int) agedeb,i,cptcod);*/  
   
   if (cptcoveff==0) ncodemax[cptcoveff]=1;    if (cptcoveff==0) ncodemax[cptcoveff]=1;
   
Line 2738  fclose(fichtm); Line 2808  fclose(fichtm);
   }    }
   
   stepsize=(int) (stepm+YEARM-1)/YEARM;    stepsize=(int) (stepm+YEARM-1)/YEARM;
   if (stepm<=24) stepsize=2;    if (stepm<=12) stepsize=1;
   
   agelim=AGESUP;    agelim=AGESUP;
   hstepm=stepsize*YEARM; /* Every year of age */    hstepm=stepsize*YEARM; /* Every year of age */
   hstepm=hstepm/stepm; /* Typically 2 years, = 2/6 months = 4 */    hstepm=hstepm/stepm; /* Typically 2 years, = 2 years/6 months = 4 */
   hstepm=12;  
    k=0;     k=0;
   for(cptcov=1;cptcov<=i1;cptcov++){    for(cptcov=1;cptcov<=i1;cptcov++){
     for(cptcod=1;cptcod<=ncodemax[cptcoveff];cptcod++){      for(cptcod=1;cptcod<=ncodemax[cptcoveff];cptcod++){
Line 2752  fclose(fichtm); Line 2822  fclose(fichtm);
       for(j=1;j<=cptcoveff;j++) {        for(j=1;j<=cptcoveff;j++) {
         fprintf(ficresf,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]);          fprintf(ficresf,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]);
       }        }
        
       fprintf(ficresf,"******\n");        fprintf(ficresf,"******\n");
   
       fprintf(ficresf,"# StartingAge FinalAge Horizon(in years)");        fprintf(ficresf,"# StartingAge FinalAge Horizon(in years)");
       for(j=1; j<=nlstate+ndeath;j++) fprintf(ficresf," P.%d",j);        for(j=1; j<=nlstate+ndeath;j++) fprintf(ficresf," P.%d",j);
   
Line 2762  fclose(fichtm); Line 2830  fclose(fichtm);
         fprintf(ficresf,"\n%d %.f %.f 0 ",k,agedeb, agedeb);          fprintf(ficresf,"\n%d %.f %.f 0 ",k,agedeb, agedeb);
        if (mobilav==1) {         if (mobilav==1) {
         for(j=1; j<=nlstate;j++)          for(j=1; j<=nlstate;j++)
           fprintf(ficresf,"%.5f ",mobaverage[(int)agedeb][j][cptcod]);            fprintf(ficresf," %.5f ",mobaverage[(int)agedeb][j][cptcod]);
         }          }
         else {          else {
           for(j=1; j<=nlstate;j++)            for(j=1; j<=nlstate;j++)
           fprintf(ficresf,"%.5f ",probs[(int)agedeb][j][cptcod]);            fprintf(ficresf," %.5f ",probs[(int)agedeb][j][cptcod]);
         }          }  
                for(j=1; j<=ndeath;j++) fprintf(ficresf," 0.00000");
       for(j=1; j<=ndeath;j++) fprintf(ficresf,"0.");  
       }        }
       for (cpt=1; cpt<=NCOVMAX;cpt++)          for (cpt=1; cpt<=nforecast;cpt++)  
       for (agedeb=fage; agedeb>=bage; agedeb--){ /* If stepm=6 months */        for (agedeb=fage; agedeb>=bage; agedeb--){ /* If stepm=6 months */
                 
         nhstepm=(int) rint((agelim-agedeb)*YEARM/stepm); /* Typically 20 years = 20*12/6=40 */          nhstepm=(int) rint((agelim-agedeb)*YEARM/stepm);
         nhstepm = nhstepm/hstepm; /* Typically 40/4=10 */          nhstepm = nhstepm/hstepm;
         /*printf("stepm=%d hstepm=%d nhstepm=%d \n",stepm,hstepm,nhstepm);*/          /*printf("agedeb=%.lf stepm=%d hstepm=%d nhstepm=%d \n",agedeb,stepm,hstepm,nhstepm);*/
   
         p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);          p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);
         oldm=oldms;savm=savms;          oldm=oldms;savm=savms;
Line 2784  fclose(fichtm); Line 2851  fclose(fichtm);
                                 
         for (h=0; h<=nhstepm; h++){          for (h=0; h<=nhstepm; h++){
                 
           if (h*hstepm/YEARM*stepm==cpt)           if (h*hstepm/YEARM*stepm==cpt)
  fprintf(ficresf,"\n%d %.f %.f %.f",k,agedeb, agedeb+ h*hstepm/YEARM*stepm, h*hstepm/YEARM*stepm);              fprintf(ficresf,"\n%d %.f %.f %.f",k,agedeb, agedeb+ h*hstepm/YEARM*stepm, h*hstepm/YEARM*stepm);
            
                     
           for(j=1; j<=nlstate+ndeath;j++) {            for(j=1; j<=nlstate+ndeath;j++) {
             kk1=0.;              kk1=0.;
Line 2794  fclose(fichtm); Line 2862  fclose(fichtm);
               kk1=kk1+p3mat[i][j][h]*mobaverage[(int)agedeb][i][cptcod];                kk1=kk1+p3mat[i][j][h]*mobaverage[(int)agedeb][i][cptcod];
               else kk1=kk1+p3mat[i][j][h]*probs[(int)agedeb][i][cptcod];                else kk1=kk1+p3mat[i][j][h]*probs[(int)agedeb][i][cptcod];
             }                  }    
             if (h*hstepm/YEARM*stepm==cpt) fprintf(ficresf," %.5f ", kk1);            if (h*hstepm/YEARM*stepm==cpt) fprintf(ficresf," %.5f ", kk1);
           }            }
         }          }
         free_ma3x(p3mat,1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);          free_ma3x(p3mat,1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);
Line 2802  fclose(fichtm); Line 2870  fclose(fichtm);
     }      }
   }    }
   if (mobilav==1) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX);    if (mobilav==1) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX);
     free_imatrix(s,1,maxwav+1,1,n);
     free_vector(weight,1,n);
   fclose(ficresf);    fclose(ficresf);
   /*---------- Health expectancies and variances ------------*/    /*---------- Health expectancies and variances ------------*/
   
Removed from v.1.14  
changed lines
  Added in v.1.15

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