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version 1.251, 2016/09/15 15:01:13
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version 1.263, 2017/04/24 15:23:15
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Line 1
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| /* $Id$ |
/* $Id$ |
| $State$ |
$State$ |
| $Log$ |
$Log$ |
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Revision 1.263 2017/04/24 15:23:15 brouard |
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Summary: to save |
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Revision 1.262 2017/04/18 16:48:12 brouard |
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*** empty log message *** |
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Revision 1.261 2017/04/05 10:14:09 brouard |
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Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1 |
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Revision 1.260 2017/04/04 17:46:59 brouard |
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Summary: Gnuplot indexations fixed (humm) |
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Revision 1.259 2017/04/04 13:01:16 brouard |
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Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3 |
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Revision 1.258 2017/04/03 10:17:47 brouard |
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Summary: Version 0.99r12 |
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Some cleanings, conformed with updated documentation. |
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Revision 1.257 2017/03/29 16:53:30 brouard |
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Summary: Temp |
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Revision 1.256 2017/03/27 05:50:23 brouard |
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Summary: Temporary |
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Revision 1.255 2017/03/08 16:02:28 brouard |
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Summary: IMaCh version 0.99r10 bugs in gnuplot fixed |
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Revision 1.254 2017/03/08 07:13:00 brouard |
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Summary: Fixing data parameter line |
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Revision 1.253 2016/12/15 11:59:41 brouard |
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Summary: 0.99 in progress |
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Revision 1.252 2016/09/15 21:15:37 brouard |
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*** empty log message *** |
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| Revision 1.251 2016/09/15 15:01:13 brouard |
Revision 1.251 2016/09/15 15:01:13 brouard |
| Summary: not working |
Summary: not working |
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| Author: Nicolas Brouard |
Author: Nicolas Brouard |
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| Revision 1.210 2015/11/18 17:41:20 brouard |
Revision 1.210 2015/11/18 17:41:20 brouard |
| Summary: Start working on projected prevalences |
Summary: Start working on projected prevalences Revision 1.209 2015/11/17 22:12:03 brouard |
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| Revision 1.209 2015/11/17 22:12:03 brouard |
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| Summary: Adding ftolpl parameter |
Summary: Adding ftolpl parameter |
| Author: N Brouard |
Author: N Brouard |
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Line 1161 int *TvarsQind;
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Line 1197 int *TvarsQind;
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| #define MAXRESULTLINES 10 |
#define MAXRESULTLINES 10 |
| int nresult=0; |
int nresult=0; |
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int parameterline=0; /* # of the parameter (type) line */ |
| int TKresult[MAXRESULTLINES]; |
int TKresult[MAXRESULTLINES]; |
| int Tresult[MAXRESULTLINES][NCOVMAX];/* For dummy variable , value (output) */ |
int Tresult[MAXRESULTLINES][NCOVMAX];/* For dummy variable , value (output) */ |
| int Tinvresult[MAXRESULTLINES][NCOVMAX];/* For dummy variable , value (output) */ |
int Tinvresult[MAXRESULTLINES][NCOVMAX];/* For dummy variable , value (output) */ |
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Line 2393 void powell(double p[], double **xi, int
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Line 2430 void powell(double p[], double **xi, int
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| flatd++; |
flatd++; |
| } |
} |
| if(flatd >0){ |
if(flatd >0){ |
| printf("%d flat directions\n",flatd); |
printf("%d flat directions: ",flatd); |
| fprintf(ficlog,"%d flat directions\n",flatd); |
fprintf(ficlog,"%d flat directions :",flatd); |
| for (j=1;j<=n;j++) { |
for (j=1;j<=n;j++) { |
| if(flatdir[j]>0){ |
if(flatdir[j]>0){ |
| printf("%d ",j); |
printf("%d ",j); |
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Line 4122 void ludcmp(double **a, int n, int *indx
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Line 4159 void ludcmp(double **a, int n, int *indx
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| big=0.0; |
big=0.0; |
| for (j=1;j<=n;j++) |
for (j=1;j<=n;j++) |
| if ((temp=fabs(a[i][j])) > big) big=temp; |
if ((temp=fabs(a[i][j])) > big) big=temp; |
| if (big == 0.0) nrerror("Singular matrix in routine ludcmp"); |
if (big == 0.0){ |
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printf(" Singular Hessian matrix at row %d:\n",i); |
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for (j=1;j<=n;j++) { |
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printf(" a[%d][%d]=%f,",i,j,a[i][j]); |
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fprintf(ficlog," a[%d][%d]=%f,",i,j,a[i][j]); |
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} |
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fflush(ficlog); |
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fclose(ficlog); |
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nrerror("Singular matrix in routine ludcmp"); |
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} |
| vv[i]=1.0/big; |
vv[i]=1.0/big; |
| } |
} |
| for (j=1;j<=n;j++) { |
for (j=1;j<=n;j++) { |
|
Line 4188 void pstamp(FILE *fichier)
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Line 4234 void pstamp(FILE *fichier)
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| fprintf(fichier,"# %s.%s\n#IMaCh version %s, %s\n#%s\n# %s", optionfilefiname,optionfilext,version,copyright, fullversion, strstart); |
fprintf(fichier,"# %s.%s\n#IMaCh version %s, %s\n#%s\n# %s", optionfilefiname,optionfilext,version,copyright, fullversion, strstart); |
| } |
} |
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int linreg(int ifi, int ila, int *no, const double x[], const double y[], double* a, double* b, double* r, double* sa, double * sb) { |
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/* y=a+bx regression */ |
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double sumx = 0.0; /* sum of x */ |
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double sumx2 = 0.0; /* sum of x**2 */ |
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double sumxy = 0.0; /* sum of x * y */ |
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double sumy = 0.0; /* sum of y */ |
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double sumy2 = 0.0; /* sum of y**2 */ |
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double sume2; /* sum of square or residuals */ |
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double yhat; |
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double denom=0; |
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int i; |
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int ne=*no; |
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for ( i=ifi, ne=0;i<=ila;i++) { |
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if(!isfinite(x[i]) || !isfinite(y[i])){ |
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/* printf(" x[%d]=%f, y[%d]=%f\n",i,x[i],i,y[i]); */ |
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continue; |
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} |
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ne=ne+1; |
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sumx += x[i]; |
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sumx2 += x[i]*x[i]; |
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sumxy += x[i] * y[i]; |
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sumy += y[i]; |
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sumy2 += y[i]*y[i]; |
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denom = (ne * sumx2 - sumx*sumx); |
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/* printf("ne=%d, i=%d,x[%d]=%f, y[%d]=%f sumx=%f, sumx2=%f, sumxy=%f, sumy=%f, sumy2=%f, denom=%f\n",ne,i,i,x[i],i,y[i], sumx, sumx2,sumxy, sumy, sumy2,denom); */ |
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} |
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denom = (ne * sumx2 - sumx*sumx); |
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if (denom == 0) { |
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// vertical, slope m is infinity |
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*b = INFINITY; |
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*a = 0; |
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if (r) *r = 0; |
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return 1; |
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} |
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*b = (ne * sumxy - sumx * sumy) / denom; |
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*a = (sumy * sumx2 - sumx * sumxy) / denom; |
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if (r!=NULL) { |
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*r = (sumxy - sumx * sumy / ne) / /* compute correlation coeff */ |
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sqrt((sumx2 - sumx*sumx/ne) * |
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(sumy2 - sumy*sumy/ne)); |
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} |
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*no=ne; |
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for ( i=ifi, ne=0;i<=ila;i++) { |
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if(!isfinite(x[i]) || !isfinite(y[i])){ |
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/* printf(" x[%d]=%f, y[%d]=%f\n",i,x[i],i,y[i]); */ |
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continue; |
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} |
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ne=ne+1; |
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yhat = y[i] - *a -*b* x[i]; |
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sume2 += yhat * yhat ; |
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denom = (ne * sumx2 - sumx*sumx); |
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/* printf("ne=%d, i=%d,x[%d]=%f, y[%d]=%f sumx=%f, sumx2=%f, sumxy=%f, sumy=%f, sumy2=%f, denom=%f\n",ne,i,i,x[i],i,y[i], sumx, sumx2,sumxy, sumy, sumy2,denom); */ |
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} |
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*sb = sqrt(sume2/(ne-2)/(sumx2 - sumx * sumx /ne)); |
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*sa= *sb * sqrt(sumx2/ne); |
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return 0; |
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} |
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|
| /************ Frequencies ********************/ |
/************ Frequencies ********************/ |
| void freqsummary(char fileres[], double p[], double pstart[], int iagemin, int iagemax, int **s, double **agev, int nlstate, int imx, \ |
void freqsummary(char fileres[], double p[], double pstart[], int iagemin, int iagemax, int **s, double **agev, int nlstate, int imx, \ |
| int *Tvaraff, int *invalidvarcomb, int **nbcode, int *ncodemax,double **mint,double **anint, char strstart[], \ |
int *Tvaraff, int *invalidvarcomb, int **nbcode, int *ncodemax,double **mint,double **anint, char strstart[], \ |
| int firstpass, int lastpass, int stepm, int weightopt, char model[]) |
int firstpass, int lastpass, int stepm, int weightopt, char model[]) |
| { /* Some frequencies as well as proposing some starting values */ |
{ /* Some frequencies as well as proposing some starting values */ |
| |
|
| int i, m, jk, j1, bool, z1,j, k, iv, jj=0; |
int i, m, jk, j1, bool, z1,j, nj, nl, k, iv, jj=0; |
| int iind=0, iage=0; |
int iind=0, iage=0; |
| int mi; /* Effective wave */ |
int mi; /* Effective wave */ |
| int first; |
int first; |
| double ***freq; /* Frequencies */ |
double ***freq; /* Frequencies */ |
| |
double *x, *y, a,b,r, sa, sb; /* for regression, y=b+m*x and r is the correlation coefficient */ |
| |
int no; |
| double *meanq; |
double *meanq; |
| double **meanqt; |
double **meanqt; |
| double *pp, **prop, *posprop, *pospropt; |
double *pp, **prop, *posprop, *pospropt; |
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Line 4251 Title=%s <br>Datafile=%s Firstpass=%d La
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Line 4364 Title=%s <br>Datafile=%s Firstpass=%d La
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| } |
} |
| fprintf(ficresphtmfr,"Current page is file <a href=\"%s\">%s</a><br>\n\n<h4>Frequencies of all effective transitions of the model, by age at begin of transition, and covariate value at the begin of transition (if the covariate is a varying covariate) </h4>Unknown status is -1<br/>\n",fileresphtmfr, fileresphtmfr); |
fprintf(ficresphtmfr,"Current page is file <a href=\"%s\">%s</a><br>\n\n<h4>Frequencies of all effective transitions of the model, by age at begin of transition, and covariate value at the begin of transition (if the covariate is a varying covariate) </h4>Unknown status is -1<br/>\n",fileresphtmfr, fileresphtmfr); |
| |
|
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y= vector(iagemin-AGEMARGE,iagemax+4+AGEMARGE); |
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x= vector(iagemin-AGEMARGE,iagemax+4+AGEMARGE); |
| freq= ma3x(-5,nlstate+ndeath,-5,nlstate+ndeath,iagemin-AGEMARGE,iagemax+4+AGEMARGE); |
freq= ma3x(-5,nlstate+ndeath,-5,nlstate+ndeath,iagemin-AGEMARGE,iagemax+4+AGEMARGE); |
| j1=0; |
j1=0; |
| |
|
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Line 4268 Title=%s <br>Datafile=%s Firstpass=%d La
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Line 4383 Title=%s <br>Datafile=%s Firstpass=%d La
|
| dateintsum=0; |
dateintsum=0; |
| k2cpt=0; |
k2cpt=0; |
| |
|
| for (j = 0; j <= cptcoveff; j+=cptcoveff){ /* j= 0 constant model */ |
if(cptcoveff == 0 ) |
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nl=1; /* Constant model only */ |
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else |
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nl=2; |
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for (nj = 1; nj <= nl; nj++){ /* nj= 1 constant model, nl number of loops. */ |
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if(nj==1) |
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j=0; /* First pass for the constant */ |
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else |
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j=cptcoveff; /* Other passes for the covariate values */ |
| first=1; |
first=1; |
| for (j1 = 1; j1 <= (int) pow(2,j); j1++){ /* Loop on covariates combination in order of model, excluding quantitatives, V4=0, V3=0 for example, fixed or varying covariates */ |
for (j1 = 1; j1 <= (int) pow(2,j); j1++){ /* Loop on covariates combination in order of model, excluding quantitatives, V4=0, V3=0 for example, fixed or varying covariates */ |
| posproptt=0.; |
posproptt=0.; |
|
Line 4514 Title=%s <br>Datafile=%s Firstpass=%d La
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Line 4637 Title=%s <br>Datafile=%s Firstpass=%d La
|
| if(first==1){ |
if(first==1){ |
| printf(" %d%d=%.0f",jk,m,freq[jk][m][iage]); |
printf(" %d%d=%.0f",jk,m,freq[jk][m][iage]); |
| } |
} |
| |
/* printf(" %d%d=%.0f",jk,m,freq[jk][m][iage]); */ |
| fprintf(ficlog," %d%d=%.0f",jk,m,freq[jk][m][iage]); |
fprintf(ficlog," %d%d=%.0f",jk,m,freq[jk][m][iage]); |
| } |
} |
| if(jk!=0 && m!=0) |
if(jk!=0 && m!=0) |
|
Line 4547 Title=%s <br>Datafile=%s Firstpass=%d La
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Line 4671 Title=%s <br>Datafile=%s Firstpass=%d La
|
| if(posproptt < 1.e-5){ |
if(posproptt < 1.e-5){ |
| fprintf(ficresphtm,"\n <p><b> This combination (%d) is not valid and no result will be produced</b></p>",j1); |
fprintf(ficresphtm,"\n <p><b> This combination (%d) is not valid and no result will be produced</b></p>",j1); |
| fprintf(ficresphtmfr,"\n <p><b> This combination (%d) is not valid and no result will be produced</b></p>",j1); |
fprintf(ficresphtmfr,"\n <p><b> This combination (%d) is not valid and no result will be produced</b></p>",j1); |
| fprintf(ficres,"\n This combination (%d) is not valid and no result will be produced\n\n",j1); |
fprintf(ficlog,"# This combination (%d) is not valid and no result will be produced\n",j1); |
| |
printf("# This combination (%d) is not valid and no result will be produced\n",j1); |
| invalidvarcomb[j1]=1; |
invalidvarcomb[j1]=1; |
| }else{ |
}else{ |
| fprintf(ficresphtm,"\n <p> This combination (%d) is valid and result will be produced.</p>",j1); |
fprintf(ficresphtm,"\n <p> This combination (%d) is valid and result will be produced.</p>",j1); |
|
Line 4560 Title=%s <br>Datafile=%s Firstpass=%d La
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Line 4685 Title=%s <br>Datafile=%s Firstpass=%d La
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| for(i=1,jk=1; i <=nlstate; i++){ |
for(i=1,jk=1; i <=nlstate; i++){ |
| for(k=1; k <=(nlstate+ndeath); k++){ |
for(k=1; k <=(nlstate+ndeath); k++){ |
| if (k != i) { |
if (k != i) { |
| printf("%d%d ",i,k); |
|
| fprintf(ficlog,"%d%d ",i,k); |
|
| for(jj=1; jj <=ncovmodel; jj++){ /* For counting jk */ |
for(jj=1; jj <=ncovmodel; jj++){ /* For counting jk */ |
| if(jj==1){ /* Constant case */ |
if(jj==1){ /* Constant case (in fact cste + age) */ |
| if(j1==1){ /* All dummy covariates to zero */ |
if(j1==1){ /* All dummy covariates to zero */ |
| freq[i][k][iagemax+4]=freq[i][k][iagemax+3]; /* Stores case 0 0 0 */ |
freq[i][k][iagemax+4]=freq[i][k][iagemax+3]; /* Stores case 0 0 0 */ |
| freq[i][i][iagemax+4]=freq[i][i][iagemax+3]; /* Stores case 0 0 0 */ |
freq[i][i][iagemax+4]=freq[i][i][iagemax+3]; /* Stores case 0 0 0 */ |
| |
printf("%d%d ",i,k); |
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fprintf(ficlog,"%d%d ",i,k); |
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printf("%12.7f ln(%.0f/%.0f)= %f, OR=%f sd=%f \n",p[jk],freq[i][k][iagemax+3],freq[i][i][iagemax+3], log(freq[i][k][iagemax+3]/freq[i][i][iagemax+3]),freq[i][k][iagemax+3]/freq[i][i][iagemax+3], sqrt(1/freq[i][k][iagemax+3]+1/freq[i][i][iagemax+3])); |
| |
fprintf(ficlog,"%12.7f ln(%.0f/%.0f)= %12.7f \n",p[jk],freq[i][k][iagemax+3],freq[i][i][iagemax+3], log(freq[i][k][iagemax+3]/freq[i][i][iagemax+3])); |
| |
pstart[jk]= log(freq[i][k][iagemax+3]/freq[i][i][iagemax+3]); |
| } |
} |
| printf("%12.7f ln(%.0f/%.0f)= %f, OR=%f sd=%f \n",p[jk],freq[i][k][iagemax+3],freq[i][i][iagemax+3], log(freq[i][k][iagemax+3]/freq[i][i][iagemax+3]),freq[i][k][iagemax+3]/freq[i][i][iagemax+3], sqrt(1/freq[i][k][iagemax+3]+1/freq[i][i][iagemax+3])); |
}else if((j1==1) && (jj==2 || nagesqr==1)){ /* age or age*age parameter without covariate V4*age (to be done later) */ |
| fprintf(ficlog,"%12.7f ln(%.0f/%.0f)= %12.7f \n",p[jk],freq[i][k][iagemax+3],freq[i][i][iagemax+3], log(freq[i][k][iagemax+3]/freq[i][i][iagemax+3])); |
for(iage=iagemin; iage <= iagemax+3; iage++){ |
| pstart[jk]= log(freq[i][k][iagemax+3]/freq[i][i][iagemax+3]); |
x[iage]= (double)iage; |
| }else if( (log(j1-1)/log(2)+1 == jj -2 -nagesqr) && Dummy[jj-2-nagesqr]==0){ /* We want only if the position, jj, in model corresponds to unique covariate equal to 1 in j1 combination */ |
y[iage]= log(freq[i][k][iage]/freq[i][i][iage]); |
| |
/* printf("i=%d, k=%d, jk=%d, j1=%d, jj=%d, y[%d]=%f\n",i,k,jk,j1,jj, iage, y[iage]); */ |
| |
} |
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linreg(iagemin,iagemax,&no,x,y,&a,&b,&r, &sa, &sb ); /* y= a+b*x with standard errors */ |
| |
pstart[jk]=b; |
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pstart[jk-1]=a; |
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}else if( j1!=1 && (j1==2 || (log(j1-1.)/log(2.)-(int)(log(j1-1.)/log(2.))) <0.010) && ( TvarsDind[(int)(log(j1-1.)/log(2.))+1]+2+nagesqr == jj) && Dummy[jj-2-nagesqr]==0){ /* We want only if the position, jj, in model corresponds to unique covariate equal to 1 in j1 combination */ |
| |
printf("j1=%d, jj=%d, (int)(log(j1-1.)/log(2.))+1=%d, TvarsDind[(int)(log(j1-1.)/log(2.))+1]=%d\n",j1, jj,(int)(log(j1-1.)/log(2.))+1,TvarsDind[(int)(log(j1-1.)/log(2.))+1]); |
| |
printf("j1=%d, jj=%d, (log(j1-1.)/log(2.))+1=%f, TvarsDind[(int)(log(j1-1.)/log(2.))+1]=%d\n",j1, jj,(log(j1-1.)/log(2.))+1,TvarsDind[(int)(log(j1-1.)/log(2.))+1]); |
| pstart[jk]= log((freq[i][k][iagemax+3]/freq[i][i][iagemax+3])/(freq[i][k][iagemax+4]/freq[i][i][iagemax+4])); |
pstart[jk]= log((freq[i][k][iagemax+3]/freq[i][i][iagemax+3])/(freq[i][k][iagemax+4]/freq[i][i][iagemax+4])); |
| |
printf("%d%d ",i,k); |
| |
fprintf(ficlog,"%d%d ",i,k); |
| printf("jk=%d,i=%d,k=%d,p[%d]=%12.7f ln((%.0f/%.0f)/(%.0f/%.0f))= %f, OR=%f sd=%f \n",jk,i,k,jk,p[jk],freq[i][k][iagemax+3],freq[i][i][iagemax+3],freq[i][k][iagemax+4],freq[i][i][iagemax+4], log((freq[i][k][iagemax+3]/freq[i][i][iagemax+3])/(freq[i][k][iagemax+4]/freq[i][i][iagemax+4])),(freq[i][k][iagemax+3]/freq[i][i][iagemax+3])/(freq[i][k][iagemax+4]/freq[i][i][iagemax+4]), sqrt(1/freq[i][k][iagemax+3]+1/freq[i][i][iagemax+3]+1/freq[i][k][iagemax+4]+1/freq[i][i][iagemax+4])); |
printf("jk=%d,i=%d,k=%d,p[%d]=%12.7f ln((%.0f/%.0f)/(%.0f/%.0f))= %f, OR=%f sd=%f \n",jk,i,k,jk,p[jk],freq[i][k][iagemax+3],freq[i][i][iagemax+3],freq[i][k][iagemax+4],freq[i][i][iagemax+4], log((freq[i][k][iagemax+3]/freq[i][i][iagemax+3])/(freq[i][k][iagemax+4]/freq[i][i][iagemax+4])),(freq[i][k][iagemax+3]/freq[i][i][iagemax+3])/(freq[i][k][iagemax+4]/freq[i][i][iagemax+4]), sqrt(1/freq[i][k][iagemax+3]+1/freq[i][i][iagemax+3]+1/freq[i][k][iagemax+4]+1/freq[i][i][iagemax+4])); |
| }else if(jj==2 || nagesqr==1){ /* age or age*age parameter */ |
|
| ; |
|
| }else{ /* Other cases, like quantitative fixed or varying covariates */ |
}else{ /* Other cases, like quantitative fixed or varying covariates */ |
| ; |
; |
| } |
} |
|
Line 4583 Title=%s <br>Datafile=%s Firstpass=%d La
|
Line 4719 Title=%s <br>Datafile=%s Firstpass=%d La
|
| /* fprintf(ficlog,"%12.7f )", param[i][jj][k]); */ |
/* fprintf(ficlog,"%12.7f )", param[i][jj][k]); */ |
| jk++; |
jk++; |
| } /* end jj */ |
} /* end jj */ |
| printf("\n"); |
|
| fprintf(ficlog,"\n"); |
|
| } /* end k!= i */ |
} /* end k!= i */ |
| } /* end k */ |
} /* end k */ |
| } /* end i, jk */ |
} /* end i, jk */ |
|
Line 4599 Title=%s <br>Datafile=%s Firstpass=%d La
|
Line 4733 Title=%s <br>Datafile=%s Firstpass=%d La
|
| printf("%d%d ",i,k); |
printf("%d%d ",i,k); |
| fprintf(ficlog,"%d%d ",i,k); |
fprintf(ficlog,"%d%d ",i,k); |
| for(jj=1; jj <=ncovmodel; jj++){ |
for(jj=1; jj <=ncovmodel; jj++){ |
| if(jj==1){ |
pstart[jk]=p[jk]; /* Setting pstart to p values by default */ |
| |
if(jj==1){ /* Age has to be done */ |
| |
pstart[jk]= log(freq[i][k][iagemax+3]/freq[i][i][iagemax+3]); |
| printf("%12.7f ln(%.0f/%.0f)= %12.7f ",p[jk],freq[i][k][iagemax+3],freq[i][i][iagemax+3], log(freq[i][k][iagemax+3]/freq[i][i][iagemax+3])); |
printf("%12.7f ln(%.0f/%.0f)= %12.7f ",p[jk],freq[i][k][iagemax+3],freq[i][i][iagemax+3], log(freq[i][k][iagemax+3]/freq[i][i][iagemax+3])); |
| fprintf(ficlog,"%12.7f ln(%.0f/%.0f)= %12.7f ",p[jk],freq[i][k][iagemax+3],freq[i][i][iagemax+3], log(freq[i][k][iagemax+3]/freq[i][i][iagemax+3])); |
fprintf(ficlog,"%12.7f ln(%.0f/%.0f)= %12.7f ",p[jk],freq[i][k][iagemax+3],freq[i][i][iagemax+3], log(freq[i][k][iagemax+3]/freq[i][i][iagemax+3])); |
| } |
} |
|
Line 4630 Title=%s <br>Datafile=%s Firstpass=%d La
|
Line 4766 Title=%s <br>Datafile=%s Firstpass=%d La
|
| fprintf(ficlog,"\n"); |
fprintf(ficlog,"\n"); |
| } /* end j=0 */ |
} /* end j=0 */ |
| } /* end j */ |
} /* end j */ |
| |
|
| |
if(mle == -2){ /* We want to use these values as starting values */ |
| |
for(i=1, jk=1; i <=nlstate; i++){ |
| |
for(j=1; j <=nlstate+ndeath; j++){ |
| |
if(j!=i){ |
| |
/*ca[0]= k+'a'-1;ca[1]='\0';*/ |
| |
printf("%1d%1d",i,j); |
| |
fprintf(ficparo,"%1d%1d",i,j); |
| |
for(k=1; k<=ncovmodel;k++){ |
| |
/* printf(" %lf",param[i][j][k]); */ |
| |
/* fprintf(ficparo," %lf",param[i][j][k]); */ |
| |
p[jk]=pstart[jk]; |
| |
printf(" %f ",pstart[jk]); |
| |
fprintf(ficparo," %f ",pstart[jk]); |
| |
jk++; |
| |
} |
| |
printf("\n"); |
| |
fprintf(ficparo,"\n"); |
| |
} |
| |
} |
| |
} |
| |
} /* end mle=-2 */ |
| dateintmean=dateintsum/k2cpt; |
dateintmean=dateintsum/k2cpt; |
| |
|
| fclose(ficresp); |
fclose(ficresp); |
|
Line 4637 Title=%s <br>Datafile=%s Firstpass=%d La
|
Line 4795 Title=%s <br>Datafile=%s Firstpass=%d La
|
| fclose(ficresphtmfr); |
fclose(ficresphtmfr); |
| free_vector(meanq,1,nqfveff); |
free_vector(meanq,1,nqfveff); |
| free_matrix(meanqt,1,lastpass,1,nqtveff); |
free_matrix(meanqt,1,lastpass,1,nqtveff); |
| |
free_vector(x, iagemin-AGEMARGE, iagemax+4+AGEMARGE); |
| |
free_vector(y, iagemin-AGEMARGE, iagemax+4+AGEMARGE); |
| free_ma3x(freq,-5,nlstate+ndeath,-5,nlstate+ndeath, iagemin-AGEMARGE, iagemax+4+AGEMARGE); |
free_ma3x(freq,-5,nlstate+ndeath,-5,nlstate+ndeath, iagemin-AGEMARGE, iagemax+4+AGEMARGE); |
| free_vector(pospropt,1,nlstate); |
free_vector(pospropt,1,nlstate); |
| free_vector(posprop,1,nlstate); |
free_vector(posprop,1,nlstate); |
|
Line 4794 void concatwav(int wav[], int **dh, int
|
Line 4954 void concatwav(int wav[], int **dh, int
|
| #else |
#else |
| if(s[m][i]==-1 && (int) andc[i] == 9999 && (int)anint[m][i] != 9999){ |
if(s[m][i]==-1 && (int) andc[i] == 9999 && (int)anint[m][i] != 9999){ |
| if(firsthree == 0){ |
if(firsthree == 0){ |
| printf("Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as pi. .\nOthers in log file only\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m); |
printf("Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as 1-p%d%d .\nOthers in log file only\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m, s[m][i], nlstate+ndeath); |
| firsthree=1; |
firsthree=1; |
| } |
} |
| fprintf(ficlog,"Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as pi. .\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m); |
fprintf(ficlog,"Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as 1-p%d%d .\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m, s[m][i], nlstate+ndeath); |
| mw[++mi][i]=m; |
mw[++mi][i]=m; |
| mli=m; |
mli=m; |
| } |
} |
|
Line 4824 void concatwav(int wav[], int **dh, int
|
Line 4984 void concatwav(int wav[], int **dh, int
|
| /* if(mi==0) never been interviewed correctly before death */ |
/* if(mi==0) never been interviewed correctly before death */ |
| /* Only death is a correct wave */ |
/* Only death is a correct wave */ |
| mw[mi][i]=m; |
mw[mi][i]=m; |
| } |
} /* else not in a death state */ |
| #ifndef DISPATCHINGKNOWNDEATHAFTERLASTWAVE |
#ifndef DISPATCHINGKNOWNDEATHAFTERLASTWAVE |
| else if ((int) andc[i] != 9999) { /* Status is negative. A death occured after lastpass, we can't take it into account because of potential bias */ |
else if ((int) andc[i] != 9999) { /* Date of death is known */ |
| /* m++; */ |
|
| /* mi++; */ |
|
| /* s[m][i]=nlstate+1; /\* We are setting the status to the last of non live state *\/ */ |
|
| /* mw[mi][i]=m; */ |
|
| if ((int)anint[m][i]!= 9999) { /* date of last interview is known */ |
if ((int)anint[m][i]!= 9999) { /* date of last interview is known */ |
| if((andc[i]+moisdc[i]/12.) <=(anint[m][i]+mint[m][i]/12.)){ /* death occured before last wave and status should have been death instead of -1 */ |
if((andc[i]+moisdc[i]/12.) <=(anint[m][i]+mint[m][i]/12.)){ /* death occured before last wave and status should have been death instead of -1 */ |
| nbwarn++; |
nbwarn++; |
|
Line 4843 void concatwav(int wav[], int **dh, int
|
Line 4999 void concatwav(int wav[], int **dh, int
|
| }else{ /* Death occured afer last wave potential bias */ |
}else{ /* Death occured afer last wave potential bias */ |
| nberr++; |
nberr++; |
| if(firstwo==0){ |
if(firstwo==0){ |
| printf("Error! Death for individual %ld line=%d occurred at %d/%d after last wave %d interviewed at %d/%d. Potential bias if other individuals are still alive at this date but ignored. This case (%d)/wave (%d) is skipped, no contribution to likelihood.\nOthers in log file only\n",num[i],i,(int) moisdc[i], (int) andc[i], lastpass,(int)mint[m][i],(int)anint[m][i], i,m ); |
printf("Error! Death for individual %ld line=%d occurred at %d/%d after last wave %d interviewed at %d/%d. Potential bias if other individuals are still alive at this date but ignored. This case (%d)/wave (%d) is skipped, no contribution to likelihood. Please add a new fictive wave at the date of last vital status scan, with a dead status or alive but unknown state status (-1). See documentation\nOthers in log file only\n",num[i],i,(int) moisdc[i], (int) andc[i], lastpass,(int)mint[m][i],(int)anint[m][i], i,m ); |
| firstwo=1; |
firstwo=1; |
| } |
} |
| fprintf(ficlog,"Error! Death for individual %ld line=%d occurred at %d/%d after last wave %d interviewed at %d/%d. Potential bias if other individuals are still alive at this date but ignored. This case (%d)/wave (%d) is skipped, no contribution to likelihood.\n",num[i],i,(int) moisdc[i], (int) andc[i], lastpass,(int)mint[m][i],(int)anint[m][i], i,m ); |
fprintf(ficlog,"Error! Death for individual %ld line=%d occurred at %d/%d after last wave %d interviewed at %d/%d. Potential bias if other individuals are still alive at this date but ignored. This case (%d)/wave (%d) is skipped, no contribution to likelihood. Please add a new fictive wave at the date of last vital status scan, with a dead status or alive but unknown state status (-1). See documentation\n\n",num[i],i,(int) moisdc[i], (int) andc[i], lastpass,(int)mint[m][i],(int)anint[m][i], i,m ); |
| } |
} |
| }else{ /* end date of interview is known */ |
}else{ /* if date of interview is unknown */ |
| /* death is known but not confirmed by death status at any wave */ |
/* death is known but not confirmed by death status at any wave */ |
| if(firstfour==0){ |
if(firstfour==0){ |
| printf("Error! Death for individual %ld line=%d occurred %d/%d but not confirmed by any death status for any wave, including last wave %d at unknown date %d/%d. Potential bias if other individuals are still alive at this date but ignored. This case (%d)/wave (%d) is skipped, no contribution to likelihood.\nOthers in log file only\n",num[i],i,(int) moisdc[i], (int) andc[i], lastpass,(int)mint[m][i],(int)anint[m][i], i,m ); |
printf("Error! Death for individual %ld line=%d occurred %d/%d but not confirmed by any death status for any wave, including last wave %d at unknown date %d/%d. Potential bias if other individuals are still alive at this date but ignored. This case (%d)/wave (%d) is skipped, no contribution to likelihood.\nOthers in log file only\n",num[i],i,(int) moisdc[i], (int) andc[i], lastpass,(int)mint[m][i],(int)anint[m][i], i,m ); |
|
Line 4879 void concatwav(int wav[], int **dh, int
|
Line 5035 void concatwav(int wav[], int **dh, int
|
| if (stepm <=0) |
if (stepm <=0) |
| dh[mi][i]=1; |
dh[mi][i]=1; |
| else{ |
else{ |
| if (s[mw[mi+1][i]][i] > nlstate) { /* A death */ |
if (s[mw[mi+1][i]][i] > nlstate) { /* A death, but what if date is unknown? */ |
| if (agedc[i] < 2*AGESUP) { |
if (agedc[i] < 2*AGESUP) { |
| j= rint(agedc[i]*12-agev[mw[mi][i]][i]*12); |
j= rint(agedc[i]*12-agev[mw[mi][i]][i]*12); |
| if(j==0) j=1; /* Survives at least one month after exam */ |
if(j==0) j=1; /* Survives at least one month after exam */ |
|
Line 6241 To be simple, these graphs help to under
|
Line 6397 To be simple, these graphs help to under
|
| void printinghtml(char fileresu[], char title[], char datafile[], int firstpass, \ |
void printinghtml(char fileresu[], char title[], char datafile[], int firstpass, \ |
| int lastpass, int stepm, int weightopt, char model[],\ |
int lastpass, int stepm, int weightopt, char model[],\ |
| int imx,int jmin, int jmax, double jmeanint,char rfileres[],\ |
int imx,int jmin, int jmax, double jmeanint,char rfileres[],\ |
| int popforecast, int prevfcast, int backcast, int estepm , \ |
int popforecast, int mobilav, int prevfcast, int mobilavproj, int backcast, int estepm , \ |
| double jprev1, double mprev1,double anprev1, double dateprev1, \ |
double jprev1, double mprev1,double anprev1, double dateprev1, \ |
| double jprev2, double mprev2,double anprev2, double dateprev2){ |
double jprev2, double mprev2,double anprev2, double dateprev2){ |
| int jj1, k1, i1, cpt, k4, nres; |
int jj1, k1, i1, cpt, k4, nres; |
|
Line 6288 void printinghtml(char fileresu[], char
|
Line 6444 void printinghtml(char fileresu[], char
|
| |
|
| for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
| for(k1=1; k1<=m;k1++){ /* For each combination of covariate */ |
for(k1=1; k1<=m;k1++){ /* For each combination of covariate */ |
| if(TKresult[nres]!= k1) |
if(m != 1 && TKresult[nres]!= k1) |
| continue; |
continue; |
| |
|
| /* for(i1=1; i1<=ncodemax[k1];i1++){ */ |
/* for(i1=1; i1<=ncodemax[k1];i1++){ */ |
|
Line 6315 void printinghtml(char fileresu[], char
|
Line 6471 void printinghtml(char fileresu[], char
|
| } |
} |
| } |
} |
| /* aij, bij */ |
/* aij, bij */ |
| fprintf(fichtm,"<br>- Logit model (yours is: 1+age+%s), for example: logit(pij)=log(pij/pii)= aij+ bij age + V1 age + etc. as a function of age: <a href=\"%s_%d-1-%d.svg\">%s_%d-1-%d.svg</a><br> \ |
fprintf(fichtm,"<br>- Logit model (yours is: logit(pij)=log(pij/pii)= aij+ bij age+%s) as a function of age: <a href=\"%s_%d-1-%d.svg\">%s_%d-1-%d.svg</a><br> \ |
| <img src=\"%s_%d-1-%d.svg\">",model,subdirf2(optionfilefiname,"PE_"),k1,nres,subdirf2(optionfilefiname,"PE_"),k1,nres,subdirf2(optionfilefiname,"PE_"),k1,nres); |
<img src=\"%s_%d-1-%d.svg\">",model,subdirf2(optionfilefiname,"PE_"),k1,nres,subdirf2(optionfilefiname,"PE_"),k1,nres,subdirf2(optionfilefiname,"PE_"),k1,nres); |
| /* Pij */ |
/* Pij */ |
| fprintf(fichtm,"<br>\n- P<sub>ij</sub> or conditional probabilities to be observed in state j being in state i, %d (stepm) months before: <a href=\"%s_%d-2-%d.svg\">%s_%d-2-%d.svg</a><br> \ |
fprintf(fichtm,"<br>\n- P<sub>ij</sub> or conditional probabilities to be observed in state j being in state i, %d (stepm) months before: <a href=\"%s_%d-2-%d.svg\">%s_%d-2-%d.svg</a><br> \ |
|
Line 6339 divided by h: <sub>h</sub>P<sub>ij</sub>
|
Line 6495 divided by h: <sub>h</sub>P<sub>ij</sub>
|
| } |
} |
| /* Period (stable) prevalence in each health state */ |
/* Period (stable) prevalence in each health state */ |
| for(cpt=1; cpt<=nlstate;cpt++){ |
for(cpt=1; cpt<=nlstate;cpt++){ |
| fprintf(fichtm,"<br>\n- Convergence to period (stable) prevalence in state %d. Or probability to be in state %d being in state (1 to %d) at different ages. <a href=\"%s_%d-%d-%d.svg\">%s_%d-%d-%d.svg</a><br> \ |
fprintf(fichtm,"<br>\n- Convergence to period (stable) prevalence in state %d. Or probability to be in state %d some years earlier, knowing that we will be in state (1 to %d) at different ages. <a href=\"%s_%d-%d-%d.svg\">%s_%d-%d-%d.svg</a><br> \ |
| <img src=\"%s_%d-%d-%d.svg\">", cpt, cpt, nlstate, subdirf2(optionfilefiname,"P_"),cpt,k1,nres,subdirf2(optionfilefiname,"P_"),cpt,k1,nres,subdirf2(optionfilefiname,"P_"),cpt,k1,nres); |
<img src=\"%s_%d-%d-%d.svg\">", cpt, cpt, nlstate, subdirf2(optionfilefiname,"P_"),cpt,k1,nres,subdirf2(optionfilefiname,"P_"),cpt,k1,nres,subdirf2(optionfilefiname,"P_"),cpt,k1,nres); |
| } |
} |
| if(backcast==1){ |
if(backcast==1){ |
| /* Period (stable) back prevalence in each health state */ |
/* Period (stable) back prevalence in each health state */ |
| for(cpt=1; cpt<=nlstate;cpt++){ |
for(cpt=1; cpt<=nlstate;cpt++){ |
| fprintf(fichtm,"<br>\n- Convergence to period (stable) back prevalence in state %d. Or probability to be in state %d being in state (1 to %d) at different ages. <a href=\"%s_%d-%d-%d.svg\">%s_%d-%d-%d.svg</a><br> \ |
fprintf(fichtm,"<br>\n- Convergence to mixed (stable) back prevalence in state %d. Or probability to be in state %d at a younger age, knowing that we will be in state (1 to %d) at different older ages. <a href=\"%s_%d-%d-%d.svg\">%s_%d-%d-%d.svg</a><br> \ |
| <img src=\"%s_%d-%d-%d.svg\">", cpt, cpt, nlstate, subdirf2(optionfilefiname,"PB_"),cpt,k1,nres,subdirf2(optionfilefiname,"PB_"),cpt,k1,nres,subdirf2(optionfilefiname,"PB_"),cpt,k1,nres); |
<img src=\"%s_%d-%d-%d.svg\">", cpt, cpt, nlstate, subdirf2(optionfilefiname,"PB_"),cpt,k1,nres,subdirf2(optionfilefiname,"PB_"),cpt,k1,nres,subdirf2(optionfilefiname,"PB_"),cpt,k1,nres); |
| } |
} |
| } |
} |
| if(prevfcast==1){ |
if(prevfcast==1){ |
| /* Projection of prevalence up to period (stable) prevalence in each health state */ |
/* Projection of prevalence up to period (stable) prevalence in each health state */ |
| for(cpt=1; cpt<=nlstate;cpt++){ |
for(cpt=1; cpt<=nlstate;cpt++){ |
| fprintf(fichtm,"<br>\n- Projection of cross-sectional prevalence (estimated with cases observed from %.1f to %.1f) up to period (stable) prevalence in state %d. Or probability to be in state %d being in state (1 to %d) at different ages. <a href=\"%s_%d-%d-%d.svg\">%s_%d-%d-%d.svg</a><br> \ |
fprintf(fichtm,"<br>\n- Projection of cross-sectional prevalence (estimated with cases observed from %.1f to %.1f and mobil_average=%d) up to period (stable) prevalence in state %d. Or probability to be in state %d being in state (1 to %d) at different ages. <a href=\"%s_%d-%d-%d.svg\">%s_%d-%d-%d.svg</a><br> \ |
| <img src=\"%s_%d-%d-%d.svg\">", dateprev1, dateprev2, cpt, cpt, nlstate, subdirf2(optionfilefiname,"PROJ_"),cpt,k1,nres,subdirf2(optionfilefiname,"PROJ_"),cpt,k1,nres,subdirf2(optionfilefiname,"PROJ_"),cpt,k1,nres); |
<img src=\"%s_%d-%d-%d.svg\">", dateprev1, dateprev2, mobilavproj, cpt, cpt, nlstate, subdirf2(optionfilefiname,"PROJ_"),cpt,k1,nres,subdirf2(optionfilefiname,"PROJ_"),cpt,k1,nres,subdirf2(optionfilefiname,"PROJ_"),cpt,k1,nres); |
| } |
} |
| } |
} |
| |
|
|
Line 6420 See page 'Matrix of variance-covariance
|
Line 6576 See page 'Matrix of variance-covariance
|
| |
|
| for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
| for(k1=1; k1<=m;k1++){ |
for(k1=1; k1<=m;k1++){ |
| if(TKresult[nres]!= k1) |
if(m != 1 && TKresult[nres]!= k1) |
| continue; |
continue; |
| /* for(i1=1; i1<=ncodemax[k1];i1++){ */ |
/* for(i1=1; i1<=ncodemax[k1];i1++){ */ |
| jj1++; |
jj1++; |
|
Line 6441 See page 'Matrix of variance-covariance
|
Line 6597 See page 'Matrix of variance-covariance
|
| } |
} |
| } |
} |
| for(cpt=1; cpt<=nlstate;cpt++) { |
for(cpt=1; cpt<=nlstate;cpt++) { |
| fprintf(fichtm,"\n<br>- Observed (cross-sectional) and period (incidence based) \ |
fprintf(fichtm,"\n<br>- Observed (cross-sectional with mov_average=%d) and period (incidence based) \ |
| prevalence (with 95%% confidence interval) in state (%d): <a href=\"%s_%d-%d-%d.svg\"> %s_%d-%d-%d.svg</a>\n <br>\ |
prevalence (with 95%% confidence interval) in state (%d): <a href=\"%s_%d-%d-%d.svg\"> %s_%d-%d-%d.svg</a>\n <br>\ |
| <img src=\"%s_%d-%d-%d.svg\">",cpt,subdirf2(optionfilefiname,"V_"),cpt,k1,nres,subdirf2(optionfilefiname,"V_"),cpt,k1,nres,subdirf2(optionfilefiname,"V_"),cpt,k1,nres); |
<img src=\"%s_%d-%d-%d.svg\">",mobilav,cpt,subdirf2(optionfilefiname,"V_"),cpt,k1,nres,subdirf2(optionfilefiname,"V_"),cpt,k1,nres,subdirf2(optionfilefiname,"V_"),cpt,k1,nres); |
| } |
} |
| fprintf(fichtm,"\n<br>- Total life expectancy by age and \ |
fprintf(fichtm,"\n<br>- Total life expectancy by age and \ |
| health expectancies in states (1) and (2). If popbased=1 the smooth (due to the model) \ |
health expectancies in states (1) and (2). If popbased=1 the smooth (due to the model) \ |
|
Line 6516 void printinggnuplot(char fileresu[], ch
|
Line 6672 void printinggnuplot(char fileresu[], ch
|
| for (k1=1; k1<= m ; k1 ++){ /* For each valid combination of covariate */ |
for (k1=1; k1<= m ; k1 ++){ /* For each valid combination of covariate */ |
| for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
| /* plot [100000000000000000000:-100000000000000000000] "mysbiaspar/vplrmysbiaspar.txt to check */ |
/* plot [100000000000000000000:-100000000000000000000] "mysbiaspar/vplrmysbiaspar.txt to check */ |
| if(TKresult[nres]!= k1) |
if(m != 1 && TKresult[nres]!= k1) |
| continue; |
continue; |
| /* We are interested in selected combination by the resultline */ |
/* We are interested in selected combination by the resultline */ |
| /* printf("\n# 1st: Period (stable) prevalence with CI: 'VPL_' files and live state =%d ", cpt); */ |
/* printf("\n# 1st: Period (stable) prevalence with CI: 'VPL_' files and live state =%d ", cpt); */ |
|
Line 6538 void printinggnuplot(char fileresu[], ch
|
Line 6694 void printinggnuplot(char fileresu[], ch
|
| /* printf("\n#\n"); */ |
/* printf("\n#\n"); */ |
| fprintf(ficgp,"\n#\n"); |
fprintf(ficgp,"\n#\n"); |
| if(invalidvarcomb[k1]){ |
if(invalidvarcomb[k1]){ |
| |
/*k1=k1-1;*/ /* To be checked */ |
| fprintf(ficgp,"#Combination (%d) ignored because no cases \n",k1); |
fprintf(ficgp,"#Combination (%d) ignored because no cases \n",k1); |
| continue; |
continue; |
| } |
} |
| |
|
| fprintf(ficgp,"\nset out \"%s_%d-%d-%d.svg\" \n",subdirf2(optionfilefiname,"V_"),cpt,k1,nres); |
fprintf(ficgp,"\nset out \"%s_%d-%d-%d.svg\" \n",subdirf2(optionfilefiname,"V_"),cpt,k1,nres); |
| fprintf(ficgp,"\n#set out \"V_%s_%d-%d-%d.svg\" \n",optionfilefiname,cpt,k1,nres); |
fprintf(ficgp,"\n#set out \"V_%s_%d-%d-%d.svg\" \n",optionfilefiname,cpt,k1,nres); |
| fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \nset ter svg size 640, 480\nplot [%.f:%.f] \"%s\" every :::%d::%d u 1:($2==%d ? $3:1/0) \"%%lf %%lf",ageminpar,fage,subdirf2(fileresu,"VPL_"),k1-1,k1-1,nres); |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \nset ter svg size 640, 480\nplot [%.f:%.f] \"%s\" every :::%d::%d u 1:($2==%d ? $3:1/0) \"%%lf %%lf",ageminpar,fage,subdirf2(fileresu,"VPL_"),nres-1,nres-1,nres); |
| |
/* fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \nset ter svg size 640, 480\nplot [%.f:%.f] \"%s\" every :::%d::%d u 1:($2==%d ? $3:1/0) \"%%lf %%lf",ageminpar,fage,subdirf2(fileresu,"VPL_"),k1-1,k1-1,nres); */ |
| |
/* k1-1 error should be nres-1*/ |
| for (i=1; i<= nlstate ; i ++) { |
for (i=1; i<= nlstate ; i ++) { |
| if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); |
if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); |
| else fprintf(ficgp," %%*lf (%%*lf)"); |
else fprintf(ficgp," %%*lf (%%*lf)"); |
| } |
} |
| fprintf(ficgp,"\" t\"Period (stable) prevalence\" w l lt 0,\"%s\" every :::%d::%d u 1:($2==%d ? $3+1.96*$4 : 1/0) \"%%lf %%lf",subdirf2(fileresu,"VPL_"),k1-1,k1-1,nres); |
fprintf(ficgp,"\" t\"Period (stable) prevalence\" w l lt 0,\"%s\" every :::%d::%d u 1:($2==%d ? $3+1.96*$4 : 1/0) \"%%lf %%lf",subdirf2(fileresu,"VPL_"),nres-1,nres-1,nres); |
| for (i=1; i<= nlstate ; i ++) { |
for (i=1; i<= nlstate ; i ++) { |
| if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); |
if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); |
| else fprintf(ficgp," %%*lf (%%*lf)"); |
else fprintf(ficgp," %%*lf (%%*lf)"); |
| } |
} |
| fprintf(ficgp,"\" t\"95%% CI\" w l lt 1,\"%s\" every :::%d::%d u 1:($2==%d ? $3-1.96*$4 : 1/0) \"%%lf %%lf",subdirf2(fileresu,"VPL_"),k1-1,k1-1,nres); |
fprintf(ficgp,"\" t\"95%% CI\" w l lt 1,\"%s\" every :::%d::%d u 1:($2==%d ? $3-1.96*$4 : 1/0) \"%%lf %%lf",subdirf2(fileresu,"VPL_"),nres-1,nres-1,nres); |
| for (i=1; i<= nlstate ; i ++) { |
for (i=1; i<= nlstate ; i ++) { |
| if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); |
if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); |
| else fprintf(ficgp," %%*lf (%%*lf)"); |
else fprintf(ficgp," %%*lf (%%*lf)"); |
|
Line 6598 void printinggnuplot(char fileresu[], ch
|
Line 6756 void printinggnuplot(char fileresu[], ch
|
| /*2 eme*/ |
/*2 eme*/ |
| for (k1=1; k1<= m ; k1 ++){ |
for (k1=1; k1<= m ; k1 ++){ |
| for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
| if(TKresult[nres]!= k1) |
if(m != 1 && TKresult[nres]!= k1) |
| continue; |
continue; |
| fprintf(ficgp,"\n# 2nd: Total life expectancy with CI: 't' files "); |
fprintf(ficgp,"\n# 2nd: Total life expectancy with CI: 't' files "); |
| for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
|
Line 6628 void printinggnuplot(char fileresu[], ch
|
Line 6786 void printinggnuplot(char fileresu[], ch
|
| fprintf(ficgp,"\nreplot "); |
fprintf(ficgp,"\nreplot "); |
| for (i=1; i<= nlstate+1 ; i ++) { |
for (i=1; i<= nlstate+1 ; i ++) { |
| k=2*i; |
k=2*i; |
| fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ?$4 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),k1-1,k1-1, vpopbased); |
fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ?$4 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),nres-1,nres-1, vpopbased); |
| for (j=1; j<= nlstate+1 ; j ++) { |
for (j=1; j<= nlstate+1 ; j ++) { |
| if (j==i) fprintf(ficgp," %%lf (%%lf)"); |
if (j==i) fprintf(ficgp," %%lf (%%lf)"); |
| else fprintf(ficgp," %%*lf (%%*lf)"); |
else fprintf(ficgp," %%*lf (%%*lf)"); |
| } |
} |
| if (i== 1) fprintf(ficgp,"\" t\"TLE\" w l lt %d, \\\n",i); |
if (i== 1) fprintf(ficgp,"\" t\"TLE\" w l lt %d, \\\n",i); |
| else fprintf(ficgp,"\" t\"LE in state (%d)\" w l lt %d, \\\n",i-1,i+1); |
else fprintf(ficgp,"\" t\"LE in state (%d)\" w l lt %d, \\\n",i-1,i+1); |
| fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ? $4-$5*2 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),k1-1,k1-1,vpopbased); |
fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ? $4-$5*2 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),nres-1,nres-1,vpopbased); |
| for (j=1; j<= nlstate+1 ; j ++) { |
for (j=1; j<= nlstate+1 ; j ++) { |
| if (j==i) fprintf(ficgp," %%lf (%%lf)"); |
if (j==i) fprintf(ficgp," %%lf (%%lf)"); |
| else fprintf(ficgp," %%*lf (%%*lf)"); |
else fprintf(ficgp," %%*lf (%%*lf)"); |
| } |
} |
| fprintf(ficgp,"\" t\"\" w l lt 0,"); |
fprintf(ficgp,"\" t\"\" w l lt 0,"); |
| fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ? $4+$5*2 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),k1-1,k1-1,vpopbased); |
fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ? $4+$5*2 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),nres-1,nres-1,vpopbased); |
| for (j=1; j<= nlstate+1 ; j ++) { |
for (j=1; j<= nlstate+1 ; j ++) { |
| if (j==i) fprintf(ficgp," %%lf (%%lf)"); |
if (j==i) fprintf(ficgp," %%lf (%%lf)"); |
| else fprintf(ficgp," %%*lf (%%*lf)"); |
else fprintf(ficgp," %%*lf (%%*lf)"); |
|
Line 6658 void printinggnuplot(char fileresu[], ch
|
Line 6816 void printinggnuplot(char fileresu[], ch
|
| /*3eme*/ |
/*3eme*/ |
| for (k1=1; k1<= m ; k1 ++){ |
for (k1=1; k1<= m ; k1 ++){ |
| for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
| if(TKresult[nres]!= k1) |
if(m != 1 && TKresult[nres]!= k1) |
| continue; |
continue; |
| |
|
| for (cpt=1; cpt<= nlstate ; cpt ++) { |
for (cpt=1; cpt<= nlstate ; cpt ++) { |
| fprintf(ficgp,"\n# 3d: Life expectancy with EXP_ files: combination=%d state=%d",k1, cpt); |
fprintf(ficgp,"\n\n# 3d: Life expectancy with EXP_ files: combination=%d state=%d",k1, cpt); |
| for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
| lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate number corresponding to k1 combination */ |
lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate number corresponding to k1 combination */ |
| /* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
|
Line 6684 void printinggnuplot(char fileresu[], ch
|
Line 6842 void printinggnuplot(char fileresu[], ch
|
| k=2+(nlstate+1)*(cpt-1); |
k=2+(nlstate+1)*(cpt-1); |
| fprintf(ficgp,"\nset out \"%s_%d-%d-%d.svg\" \n",subdirf2(optionfilefiname,"EXP_"),cpt,k1,nres); |
fprintf(ficgp,"\nset out \"%s_%d-%d-%d.svg\" \n",subdirf2(optionfilefiname,"EXP_"),cpt,k1,nres); |
| fprintf(ficgp,"set ter svg size 640, 480\n\ |
fprintf(ficgp,"set ter svg size 640, 480\n\ |
| plot [%.f:%.f] \"%s\" every :::%d::%d u 1:%d t \"e%d1\" w l",ageminpar,fage,subdirf2(fileresu,"E_"),k1-1,k1-1,k,cpt); |
plot [%.f:%.f] \"%s\" every :::%d::%d u 1:%d t \"e%d1\" w l",ageminpar,fage,subdirf2(fileresu,"E_"),nres-1,nres-1,k,cpt); |
| /*fprintf(ficgp,",\"e%s\" every :::%d::%d u 1:($%d-2*$%d) \"\%%lf ",fileres,k1-1,k1-1,k,k+1); |
/*fprintf(ficgp,",\"e%s\" every :::%d::%d u 1:($%d-2*$%d) \"\%%lf ",fileres,k1-1,k1-1,k,k+1); |
| for (i=1; i<= nlstate*2 ; i ++) fprintf(ficgp,"\%%lf (\%%lf) "); |
for (i=1; i<= nlstate*2 ; i ++) fprintf(ficgp,"\%%lf (\%%lf) "); |
| fprintf(ficgp,"\" t \"e%d1\" w l",cpt); |
fprintf(ficgp,"\" t \"e%d1\" w l",cpt); |
|
Line 6694 plot [%.f:%.f] \"%s\" every :::%d::%d u
|
Line 6852 plot [%.f:%.f] \"%s\" every :::%d::%d u
|
| |
|
| */ |
*/ |
| for (i=1; i< nlstate ; i ++) { |
for (i=1; i< nlstate ; i ++) { |
| fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d%d\" w l",subdirf2(fileresu,"E_"),k1-1,k1-1,k+i,cpt,i+1); |
fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d%d\" w l",subdirf2(fileresu,"E_"),nres-1,nres-1,k+i,cpt,i+1); |
| /* fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d%d\" w l",subdirf2(fileres,"e"),k1-1,k1-1,k+2*i,cpt,i+1);*/ |
/* fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d%d\" w l",subdirf2(fileres,"e"),k1-1,k1-1,k+2*i,cpt,i+1);*/ |
| |
|
| } |
} |
| fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d.\" w l",subdirf2(fileresu,"E_"),k1-1,k1-1,k+nlstate,cpt); |
fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d.\" w l",subdirf2(fileresu,"E_"),nres-1,nres-1,k+nlstate,cpt); |
| } |
} |
| } /* end nres */ |
} /* end nres */ |
| } /* end kl 3eme */ |
} /* end kl 3eme */ |
|
Line 6707 plot [%.f:%.f] \"%s\" every :::%d::%d u
|
Line 6865 plot [%.f:%.f] \"%s\" every :::%d::%d u
|
| /* Survival functions (period) from state i in state j by initial state i */ |
/* Survival functions (period) from state i in state j by initial state i */ |
| for (k1=1; k1<=m; k1++){ /* For each covariate and each value */ |
for (k1=1; k1<=m; k1++){ /* For each covariate and each value */ |
| for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
| if(TKresult[nres]!= k1) |
if(m != 1 && TKresult[nres]!= k1) |
| continue; |
continue; |
| for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life state cpt*/ |
for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life state cpt*/ |
| fprintf(ficgp,"\n#\n#\n# Survival functions in state j : 'LIJ_' files, cov=%d state=%d",k1, cpt); |
fprintf(ficgp,"\n#\n#\n# Survival functions in state j : 'LIJ_' files, cov=%d state=%d",k1, cpt); |
|
Line 6753 set ter svg size 640, 480\nunset log y\n
|
Line 6911 set ter svg size 640, 480\nunset log y\n
|
| /* Survival functions (period) from state i in state j by final state j */ |
/* Survival functions (period) from state i in state j by final state j */ |
| for (k1=1; k1<= m ; k1++){ /* For each covariate combination if any */ |
for (k1=1; k1<= m ; k1++){ /* For each covariate combination if any */ |
| for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
| if(TKresult[nres]!= k1) |
if(m != 1 && TKresult[nres]!= k1) |
| continue; |
continue; |
| for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each inital state */ |
for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each inital state */ |
| fprintf(ficgp,"\n#\n#\n# Survival functions in state j and all livestates from state i by final state j: 'lij' files, cov=%d state=%d",k1, cpt); |
fprintf(ficgp,"\n#\n#\n# Survival functions in state j and all livestates from state i by final state j: 'lij' files, cov=%d state=%d",k1, cpt); |
|
Line 6807 set ter svg size 640, 480\nunset log y\n
|
Line 6965 set ter svg size 640, 480\nunset log y\n
|
| /* CV preval stable (period) for each covariate */ |
/* CV preval stable (period) for each covariate */ |
| for (k1=1; k1<= m ; k1 ++) /* For each covariate combination if any */ |
for (k1=1; k1<= m ; k1 ++) /* For each covariate combination if any */ |
| for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
| if(TKresult[nres]!= k1) |
if(m != 1 && TKresult[nres]!= k1) |
| continue; |
continue; |
| for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life state */ |
for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life state of arrival */ |
| |
|
| fprintf(ficgp,"\n#\n#\n#CV preval stable (period): 'pij' files, covariatecombination#=%d state=%d",k1, cpt); |
fprintf(ficgp,"\n#\n#\n#CV preval stable (period): 'pij' files, covariatecombination#=%d state=%d",k1, cpt); |
| for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
|
Line 6833 set ter svg size 640, 480\nunset log y\n
|
Line 6991 set ter svg size 640, 480\nunset log y\n
|
| fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
| set ter svg size 640, 480\nunset log y\nplot [%.f:%.f] ", ageminpar, agemaxpar); |
set ter svg size 640, 480\nunset log y\nplot [%.f:%.f] ", ageminpar, agemaxpar); |
| k=3; /* Offset */ |
k=3; /* Offset */ |
| for (i=1; i<= nlstate ; i ++){ |
for (i=1; i<= nlstate ; i ++){ /* State of origin */ |
| if(i==1) |
if(i==1) |
| fprintf(ficgp,"\"%s\"",subdirf2(fileresu,"PIJ_")); |
fprintf(ficgp,"\"%s\"",subdirf2(fileresu,"PIJ_")); |
| else |
else |
| fprintf(ficgp,", '' "); |
fprintf(ficgp,", '' "); |
| l=(nlstate+ndeath)*(i-1)+1; |
l=(nlstate+ndeath)*(i-1)+1; /* 1, 1+ nlstate+ndeath, 1+2*(nlstate+ndeath) */ |
| fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l+(cpt-1),k+l); |
fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l+(cpt-1),k+l); |
| for (j=2; j<= nlstate ; j ++) |
for (j=2; j<= nlstate ; j ++) |
| fprintf(ficgp,"+$%d",k+l+j-1); |
fprintf(ficgp,"+$%d",k+l+j-1); |
|
Line 6854 set ter svg size 640, 480\nunset log y\n
|
Line 7012 set ter svg size 640, 480\nunset log y\n
|
| /* CV back preval stable (period) for each covariate */ |
/* CV back preval stable (period) for each covariate */ |
| for (k1=1; k1<= m ; k1 ++) /* For each covariate combination if any */ |
for (k1=1; k1<= m ; k1 ++) /* For each covariate combination if any */ |
| for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
| if(TKresult[nres]!= k1) |
if(m != 1 && TKresult[nres]!= k1) |
| continue; |
continue; |
| for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life state */ |
for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life ending state */ |
| fprintf(ficgp,"\n#\n#\n#CV Back preval stable (period): 'pij' files, covariatecombination#=%d state=%d",k1, cpt); |
fprintf(ficgp,"\n#\n#\n#CV Back preval stable (period): 'pijb' files, covariatecombination#=%d state=%d",k1, cpt); |
| for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
| lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate number corresponding to k1 combination */ |
lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate number corresponding to k1 combination */ |
| /* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
|
Line 6879 set ter svg size 640, 480\nunset log y\n
|
Line 7037 set ter svg size 640, 480\nunset log y\n
|
| fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
| set ter svg size 640, 480\nunset log y\nplot [%.f:%.f] ", ageminpar, agemaxpar); |
set ter svg size 640, 480\nunset log y\nplot [%.f:%.f] ", ageminpar, agemaxpar); |
| k=3; /* Offset */ |
k=3; /* Offset */ |
| for (i=1; i<= nlstate ; i ++){ |
for (i=1; i<= nlstate ; i ++){ /* State of origin */ |
| if(i==1) |
if(i==1) |
| fprintf(ficgp,"\"%s\"",subdirf2(fileresu,"PIJB_")); |
fprintf(ficgp,"\"%s\"",subdirf2(fileresu,"PIJB_")); |
| else |
else |
| fprintf(ficgp,", '' "); |
fprintf(ficgp,", '' "); |
| /* l=(nlstate+ndeath)*(i-1)+1; */ |
/* l=(nlstate+ndeath)*(i-1)+1; */ |
| l=(nlstate+ndeath)*(cpt-1)+1; |
l=(nlstate+ndeath)*(cpt-1)+1; /* fixed for i; cpt=1 1, cpt=2 1+ nlstate+ndeath, 1+2*(nlstate+ndeath) */ |
| /* fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l+(cpt-1),k+l); /\* a vérifier *\/ */ |
/* fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l+(cpt-1),k+l); /\* a vérifier *\/ */ |
| /* fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l+(cpt-1),k+l+(cpt-1)+i-1); /\* a vérifier *\/ */ |
/* fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l+(cpt-1),k+l+(cpt-1)+i-1); /\* a vérifier *\/ */ |
| fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d",k1,k+l+(cpt-1)+i-1); /* a vérifier */ |
fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d",k1,k+l+i-1); /* To be verified */ |
| /* for (j=2; j<= nlstate ; j ++) */ |
/* for (j=2; j<= nlstate ; j ++) */ |
| /* fprintf(ficgp,"+$%d",k+l+j-1); */ |
/* fprintf(ficgp,"+$%d",k+l+j-1); */ |
| /* /\* fprintf(ficgp,"+$%d",k+l+j-1); *\/ */ |
/* /\* fprintf(ficgp,"+$%d",k+l+j-1); *\/ */ |
|
Line 6905 set ter svg size 640, 480\nunset log y\n
|
Line 7063 set ter svg size 640, 480\nunset log y\n
|
| |
|
| for (k1=1; k1<= m ; k1 ++) /* For each covariate combination if any */ |
for (k1=1; k1<= m ; k1 ++) /* For each covariate combination if any */ |
| for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
| if(TKresult[nres]!= k1) |
if(m != 1 && TKresult[nres]!= k1) |
| continue; |
continue; |
| for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life state */ |
for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life state */ |
| fprintf(ficgp,"\n#\n#\n#Projection of prevalence to stable (period): 'PROJ_' files, covariatecombination#=%d state=%d",k1, cpt); |
fprintf(ficgp,"\n#\n#\n#Projection of prevalence to stable (period): 'PROJ_' files, covariatecombination#=%d state=%d",k1, cpt); |
|
Line 7036 set ter svg size 640, 480\nunset log y\n
|
Line 7194 set ter svg size 640, 480\nunset log y\n
|
| fprintf(ficgp,"# jk=1 to 2^%d=%d\n",cptcoveff,m);/* to be checked */ |
fprintf(ficgp,"# jk=1 to 2^%d=%d\n",cptcoveff,m);/* to be checked */ |
| for(jk=1; jk <=m; jk++) /* For each combination of covariate */ |
for(jk=1; jk <=m; jk++) /* For each combination of covariate */ |
| for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
| if(TKresult[nres]!= jk) |
if(m != 1 && TKresult[nres]!= jk) |
| continue; |
continue; |
| fprintf(ficgp,"# Combination of dummy jk=%d and ",jk); |
fprintf(ficgp,"# Combination of dummy jk=%d and ",jk); |
| for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
|
Line 7398 set ter svg size 640, 480\nunset log y\n
|
Line 7556 set ter svg size 640, 480\nunset log y\n
|
| /* if (h==(int)(YEARM*yearp)){ */ |
/* if (h==(int)(YEARM*yearp)){ */ |
| for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
| for(k=1; k<=i1;k++){ |
for(k=1; k<=i1;k++){ |
| if(TKresult[nres]!= k) |
if(i1 != 1 && TKresult[nres]!= k) |
| continue; |
continue; |
| if(invalidvarcomb[k]){ |
if(invalidvarcomb[k]){ |
| printf("\nCombination (%d) projection ignored because no cases \n",k); |
printf("\nCombination (%d) projection ignored because no cases \n",k); |
|
Line 8349 int decoderesult ( char resultline[], in
|
Line 8507 int decoderesult ( char resultline[], in
|
| if (strlen(resultsav) >1){ |
if (strlen(resultsav) >1){ |
| j=nbocc(resultsav,'='); /**< j=Number of covariate values'=' */ |
j=nbocc(resultsav,'='); /**< j=Number of covariate values'=' */ |
| } |
} |
| |
if(j == 0){ /* Resultline but no = */ |
| |
TKresult[nres]=0; /* Combination for the nresult and the model */ |
| |
return (0); |
| |
} |
| |
|
| if( j != cptcovs ){ /* Be careful if a variable is in a product but not single */ |
if( j != cptcovs ){ /* Be careful if a variable is in a product but not single */ |
| printf("ERROR: the number of variable in the resultline, %d, differs from the number of variable used in the model line, %d.\n",j, cptcovs); |
printf("ERROR: the number of variable in the resultline, %d, differs from the number of variable used in the model line, %d.\n",j, cptcovs); |
| fprintf(ficlog,"ERROR: the number of variable in the resultline, %d, differs from the number of variable used in the model line, %d.\n",j, cptcovs); |
fprintf(ficlog,"ERROR: the number of variable in the resultline, %d, differs from the number of variable used in the model line, %d.\n",j, cptcovs); |
|
Line 8963 int calandcheckages(int imx, int maxwav,
|
Line 9126 int calandcheckages(int imx, int maxwav,
|
| *nberr = *nberr + 1; |
*nberr = *nberr + 1; |
| if(firstone == 0){ |
if(firstone == 0){ |
| firstone=1; |
firstone=1; |
| printf("Error! Date of death (month %2d and year %4d) of individual %ld on line %d was unknown, you must set an arbitrary year of death or he/she is skipped and results can be biased (%d) because status is a death state %d at wave %d. Wave dropped.\nOther similar cases in log file\n",(int)moisdc[i],(int)andc[i],num[i],i, *nberr,s[m][i],m); |
printf("Warning (#%d)! Date of death (month %2d and year %4d) of individual %ld on line %d was unknown but status is a death state %d at wave %d. If you don't know the vital status, please enter -2. If he/she is still alive but don't know the state, please code with '-1 or '.'. Here, we do not believe in a death, skipped.\nOther similar cases in log file\n", *nberr,(int)moisdc[i],(int)andc[i],num[i],i,s[m][i],m); |
| } |
} |
| fprintf(ficlog,"Error! Date of death (month %2d and year %4d) of individual %ld on line %d was unknown, you must set an arbitrary year of death or he/she is skipped and results can be biased (%d) because status is a death state %d at wave %d. Wave dropped.\n",(int)moisdc[i],(int)andc[i],num[i],i, *nberr,s[m][i],m); |
fprintf(ficlog,"Warning (#%d)! Date of death (month %2d and year %4d) of individual %ld on line %d was unknown but status is a death state %d at wave %d. If you don't know the vital status, please enter -2. If he/she is still alive but don't know the state, please code with '-1 or '.'. Here, we do not believe in a death, skipped.\n", *nberr,(int)moisdc[i],(int)andc[i],num[i],i,s[m][i],m); |
| s[m][i]=-1; |
s[m][i]=-1; /* Droping the death status */ |
| } |
} |
| if((int)moisdc[i]==99 && (int)andc[i]!=9999 && s[m][i]>nlstate){ |
if((int)moisdc[i]==99 && (int)andc[i]!=9999 && s[m][i]>nlstate){ |
| (*nberr)++; |
(*nberr)++; |
| printf("Error! Month of death of individual %ld on line %d was unknown %2d, you should set it otherwise the information on the death is skipped and results are biased.\n",num[i],i,(int)moisdc[i]); |
printf("Error (#%d)! Month of death of individual %ld on line %d was unknown (%2d) (year of death is %4d) and status is a death state %d at wave %d. Please impute an arbitrary (or not) month and rerun. Currently this transition to death will be skipped (status is set to -2).\nOther similar cases in log file\n", *nberr, num[i],i,(int)moisdc[i],(int)andc[i],s[m][i],m); |
| fprintf(ficlog,"Error! Month of death of individual %ld on line %d was unknown %f, you should set it otherwise the information on the death is skipped and results are biased.\n",num[i],i,moisdc[i]); |
fprintf(ficlog,"Error (#%d)! Month of death of individual %ld on line %d was unknown (%2d) (year of death is %4d) and status is a death state %d at wave %d. Please impute an arbitrary (or not) month and rerun. Currently this transition to death will be skipped (status is set to -2).\n", *nberr, num[i],i,(int)moisdc[i],(int)andc[i],s[m][i],m); |
| s[m][i]=-1; /* We prefer to skip it (and to skip it in version 0.8a1 too */ |
s[m][i]=-2; /* We prefer to skip it (and to skip it in version 0.8a1 too */ |
| } |
} |
| } |
} |
| } |
} |
|
Line 9285 int prevalence_limit(double *p, double *
|
Line 9448 int prevalence_limit(double *p, double *
|
| |
|
| for(k=1; k<=i1;k++){ /* For each combination k of dummy covariates in the model */ |
for(k=1; k<=i1;k++){ /* For each combination k of dummy covariates in the model */ |
| for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
| if(TKresult[nres]!= k) |
if(i1 != 1 && TKresult[nres]!= k) |
| continue; |
continue; |
| |
|
| /* for(cptcov=1,k=0;cptcov<=i1;cptcov++){ */ |
/* for(cptcov=1,k=0;cptcov<=i1;cptcov++){ */ |
|
Line 9382 int back_prevalence_limit(double *p, dou
|
Line 9545 int back_prevalence_limit(double *p, dou
|
| |
|
| for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
| for(k=1; k<=i1;k++){ /* For any combination of dummy covariates, fixed and varying */ |
for(k=1; k<=i1;k++){ /* For any combination of dummy covariates, fixed and varying */ |
| if(TKresult[nres]!= k) |
if(i1 != 1 && TKresult[nres]!= k) |
| continue; |
continue; |
| //printf("cptcov=%d cptcod=%d codtab=%d\n",cptcov, cptcod,codtabm(cptcod,cptcov)); |
//printf("cptcov=%d cptcod=%d codtab=%d\n",cptcov, cptcod,codtabm(cptcod,cptcov)); |
| fprintf(ficresplb,"#******"); |
fprintf(ficresplb,"#******"); |
|
Line 9441 int back_prevalence_limit(double *p, dou
|
Line 9604 int back_prevalence_limit(double *p, dou
|
| fprintf(ficresplb," %.3f %d\n", tot, *ncvyearp); |
fprintf(ficresplb," %.3f %d\n", tot, *ncvyearp); |
| } /* Age */ |
} /* Age */ |
| /* was end of cptcod */ |
/* was end of cptcod */ |
| |
/*fprintf(ficresplb,"\n");*/ /* Seems to be necessary for gnuplot only if two result lines and no covariate. */ |
| } /* end of any combination */ |
} /* end of any combination */ |
| } /* end of nres */ |
} /* end of nres */ |
| /* hBijx(p, bage, fage); */ |
/* hBijx(p, bage, fage); */ |
|
Line 9485 int hPijx(double *p, int bage, int fage)
|
Line 9649 int hPijx(double *p, int bage, int fage)
|
| /* k=k+1; */ |
/* k=k+1; */ |
| for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
| for(k=1; k<=i1;k++){ |
for(k=1; k<=i1;k++){ |
| if(TKresult[nres]!= k) |
if(i1 != 1 && TKresult[nres]!= k) |
| continue; |
continue; |
| fprintf(ficrespij,"\n#****** "); |
fprintf(ficrespij,"\n#****** "); |
| for(j=1;j<=cptcoveff;j++) |
for(j=1;j<=cptcoveff;j++) |
|
Line 9557 int hPijx(double *p, int bage, int fage)
|
Line 9721 int hPijx(double *p, int bage, int fage)
|
| |
|
| /* hstepm=1; aff par mois*/ |
/* hstepm=1; aff par mois*/ |
| pstamp(ficrespijb); |
pstamp(ficrespijb); |
| fprintf(ficrespijb,"#****** h Pij x Back Probability to be in state i at age x-h being in j at x "); |
fprintf(ficrespijb,"#****** h Bij x Back probability to be in state i at age x-h being in j at x: B1j+B2j+...=1 "); |
| i1= pow(2,cptcoveff); |
i1= pow(2,cptcoveff); |
| /* for(cptcov=1,k=0;cptcov<=i1;cptcov++){ */ |
/* for(cptcov=1,k=0;cptcov<=i1;cptcov++){ */ |
| /* /\*for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*\/ */ |
/* /\*for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*\/ */ |
| /* k=k+1; */ |
/* k=k+1; */ |
| for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
| for(k=1; k<=i1;k++){ /* For any combination of dummy covariates, fixed and varying */ |
for(k=1; k<=i1;k++){ /* For any combination of dummy covariates, fixed and varying */ |
| if(TKresult[nres]!= k) |
if(i1 != 1 && TKresult[nres]!= k) |
| continue; |
continue; |
| fprintf(ficrespijb,"\n#****** "); |
fprintf(ficrespijb,"\n#****** "); |
| for(j=1;j<=cptcoveff;j++) |
for(j=1;j<=cptcoveff;j++) |
|
Line 9591 int hPijx(double *p, int bage, int fage)
|
Line 9755 int hPijx(double *p, int bage, int fage)
|
| /* hbxij(p3mat,nhstepm,agedeb,hstepm,p,nlstate,stepm,oldm,savm, k); */ |
/* hbxij(p3mat,nhstepm,agedeb,hstepm,p,nlstate,stepm,oldm,savm, k); */ |
| hbxij(p3mat,nhstepm,agedeb,hstepm,p,prevacurrent,nlstate,stepm, k); |
hbxij(p3mat,nhstepm,agedeb,hstepm,p,prevacurrent,nlstate,stepm, k); |
| /* hbxij(p3mat,nhstepm,agedeb,hstepm,p,prevacurrent,nlstate,stepm,oldm,savm, dnewm, doldm, dsavm, k); */ |
/* hbxij(p3mat,nhstepm,agedeb,hstepm,p,prevacurrent,nlstate,stepm,oldm,savm, dnewm, doldm, dsavm, k); */ |
| fprintf(ficrespijb,"# Cov Agex agex-h hpijx with i,j="); |
fprintf(ficrespijb,"# Cov Agex agex-h hbijx with i,j="); |
| for(i=1; i<=nlstate;i++) |
for(i=1; i<=nlstate;i++) |
| for(j=1; j<=nlstate+ndeath;j++) |
for(j=1; j<=nlstate+ndeath;j++) |
| fprintf(ficrespijb," %1d-%1d",i,j); |
fprintf(ficrespijb," %1d-%1d",i,j); |
|
Line 9637 int main(int argc, char *argv[])
|
Line 9801 int main(int argc, char *argv[])
|
| int NDIM=2; |
int NDIM=2; |
| int vpopbased=0; |
int vpopbased=0; |
| int nres=0; |
int nres=0; |
| |
int endishere=0; |
| |
|
| char ca[32], cb[32]; |
char ca[32], cb[32]; |
| /* FILE *fichtm; *//* Html File */ |
/* FILE *fichtm; *//* Html File */ |
|
Line 9918 int main(int argc, char *argv[])
|
Line 10083 int main(int argc, char *argv[])
|
| break; |
break; |
| } |
} |
| if((num_filled=sscanf(line,"model=1+age%[^.\n]", model)) !=EOF){ |
if((num_filled=sscanf(line,"model=1+age%[^.\n]", model)) !=EOF){ |
| if (num_filled == 0) |
if (num_filled == 0){ |
| model[0]='\0'; |
printf("ERROR %d: Model should be at minimum 'model=1+age.' WITHOUT space:'%s'\n",num_filled, line); |
| else if (num_filled != 1){ |
fprintf(ficlog,"ERROR %d: Model should be at minimum 'model=1+age.' WITHOUT space:'%s'\n",num_filled, line); |
| |
model[0]='\0'; |
| |
goto end; |
| |
} else if (num_filled != 1){ |
| printf("ERROR %d: Model should be at minimum 'model=1+age.' %s\n",num_filled, line); |
printf("ERROR %d: Model should be at minimum 'model=1+age.' %s\n",num_filled, line); |
| fprintf(ficlog,"ERROR %d: Model should be at minimum 'model=1+age.' %s\n",num_filled, line); |
fprintf(ficlog,"ERROR %d: Model should be at minimum 'model=1+age.' %s\n",num_filled, line); |
| model[0]='\0'; |
model[0]='\0'; |
|
Line 10007 int main(int argc, char *argv[])
|
Line 10175 int main(int argc, char *argv[])
|
| fclose (ficlog); |
fclose (ficlog); |
| goto end; |
goto end; |
| exit(0); |
exit(0); |
| } else if(mle==-2) { /* Guessing from means */ |
|
| prwizard(ncovmodel, nlstate, ndeath, model, ficparo); |
|
| printf(" You chose mle=-2, look at file %s for a template of covariance matrix \n",filereso); |
|
| fprintf(ficlog," You chose mle=-2, look at file %s for a template of covariance matrix \n",filereso); |
|
| |
|
| } else if(mle==-5) { /* Main Wizard */ |
} else if(mle==-5) { /* Main Wizard */ |
| prwizard(ncovmodel, nlstate, ndeath, model, ficparo); |
prwizard(ncovmodel, nlstate, ndeath, model, ficparo); |
| printf(" You chose mle=-3, look at file %s for a template of covariance matrix \n",filereso); |
printf(" You chose mle=-3, look at file %s for a template of covariance matrix \n",filereso); |
|
Line 10997 Please run with mle=-1 to get a correct
|
Line 11160 Please run with mle=-1 to get a correct
|
| fprintf(ficparo,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f estepm=%d, ftolpl=%e\n",ageminpar,agemaxpar,bage,fage, estepm, ftolpl); |
fprintf(ficparo,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f estepm=%d, ftolpl=%e\n",ageminpar,agemaxpar,bage,fage, estepm, ftolpl); |
| |
|
| /* Other stuffs, more or less useful */ |
/* Other stuffs, more or less useful */ |
| while((c=getc(ficpar))=='#' && c!= EOF){ |
while(fgets(line, MAXLINE, ficpar)) { |
| ungetc(c,ficpar); |
/* If line starts with a # it is a comment */ |
| fgets(line, MAXLINE, ficpar); |
if (line[0] == '#') { |
| fputs(line,stdout); |
numlinepar++; |
| fputs(line,ficparo); |
fputs(line,stdout); |
| } |
fputs(line,ficparo); |
| ungetc(c,ficpar); |
fputs(line,ficlog); |
| |
continue; |
| fscanf(ficpar,"begin-prev-date=%lf/%lf/%lf end-prev-date=%lf/%lf/%lf mov_average=%d\n",&jprev1, &mprev1,&anprev1,&jprev2, &mprev2,&anprev2,&mobilav); |
}else |
| fprintf(ficparo,"begin-prev-date=%.lf/%.lf/%.lf end-prev-date=%.lf/%.lf/%.lf mov_average=%d\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2,mobilav); |
break; |
| fprintf(ficres,"begin-prev-date=%.lf/%.lf/%.lf end-prev-date=%.lf/%.lf/%.lf mov_average=%d\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2,mobilav); |
|
| printf("begin-prev-date=%.lf/%.lf/%.lf end-prev-date=%.lf/%.lf/%.lf mov_average=%d\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2,mobilav); |
|
| fprintf(ficlog,"begin-prev-date=%.lf/%.lf/%.lf end-prev-date=%.lf/%.lf/%.lf mov_average=%d\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2,mobilav); |
|
| |
|
| while((c=getc(ficpar))=='#' && c!= EOF){ |
|
| ungetc(c,ficpar); |
|
| fgets(line, MAXLINE, ficpar); |
|
| fputs(line,stdout); |
|
| fputs(line,ficparo); |
|
| } |
|
| ungetc(c,ficpar); |
|
| |
|
| |
|
| dateprev1=anprev1+(mprev1-1)/12.+(jprev1-1)/365.; |
|
| dateprev2=anprev2+(mprev2-1)/12.+(jprev2-1)/365.; |
|
| |
|
| fscanf(ficpar,"pop_based=%d\n",&popbased); |
|
| fprintf(ficlog,"pop_based=%d\n",popbased); |
|
| fprintf(ficparo,"pop_based=%d\n",popbased); |
|
| fprintf(ficres,"pop_based=%d\n",popbased); |
|
| |
|
| while((c=getc(ficpar))=='#' && c!= EOF){ |
|
| ungetc(c,ficpar); |
|
| fgets(line, MAXLINE, ficpar); |
|
| fputs(line,stdout); |
|
| fputs(line,ficres); |
|
| fputs(line,ficparo); |
|
| } |
} |
| ungetc(c,ficpar); |
|
| |
if((num_filled=sscanf(line,"begin-prev-date=%lf/%lf/%lf end-prev-date=%lf/%lf/%lf mov_average=%d\n",&jprev1, &mprev1,&anprev1,&jprev2, &mprev2,&anprev2,&mobilav)) !=EOF){ |
| fscanf(ficpar,"prevforecast=%d starting-proj-date=%lf/%lf/%lf final-proj-date=%lf/%lf/%lf mobil_average=%d\n",&prevfcast,&jproj1,&mproj1,&anproj1,&jproj2,&mproj2,&anproj2,&mobilavproj); |
|
| fprintf(ficparo,"prevforecast=%d starting-proj-date=%.lf/%.lf/%.lf final-proj-date=%.lf/%.lf/%.lf mobil_average=%d\n",prevfcast,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2,mobilavproj); |
if (num_filled != 7) { |
| printf("prevforecast=%d starting-proj-date=%.lf/%.lf/%.lf final-proj-date=%.lf/%.lf/%.lf mobil_average=%d\n",prevfcast,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2,mobilavproj); |
printf("Error: Not 7 (data)parameters in line but %d, for example:begin-prev-date=1/1/1990 end-prev-date=1/6/2004 mov_average=0\n, your line=%s . Probably you are running an older format.\n",num_filled,line); |
| fprintf(ficlog,"prevforecast=%d starting-proj-date=%.lf/%.lf/%.lf final-proj-date=%.lf/%.lf/%.lf mobil_average=%d\n",prevfcast,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2,mobilavproj); |
fprintf(ficlog,"Error: Not 7 (data)parameters in line but %d, for example:begin-prev-date=1/1/1990 end-prev-date=1/6/2004 mov_average=0\n, your line=%s . Probably you are running an older format.\n",num_filled,line); |
| fprintf(ficres,"prevforecast=%d starting-proj-date=%.lf/%.lf/%.lf final-proj-date=%.lf/%.lf/%.lf mobil_average=%d\n",prevfcast,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2,mobilavproj); |
goto end; |
| /* day and month of proj2 are not used but only year anproj2.*/ |
} |
| |
printf("begin-prev-date=%.lf/%.lf/%.lf end-prev-date=%.lf/%.lf/%.lf mov_average=%d\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2,mobilav); |
| while((c=getc(ficpar))=='#' && c!= EOF){ |
fprintf(ficparo,"begin-prev-date=%.lf/%.lf/%.lf end-prev-date=%.lf/%.lf/%.lf mov_average=%d\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2,mobilav); |
| ungetc(c,ficpar); |
fprintf(ficres,"begin-prev-date=%.lf/%.lf/%.lf end-prev-date=%.lf/%.lf/%.lf mov_average=%d\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2,mobilav); |
| fgets(line, MAXLINE, ficpar); |
fprintf(ficlog,"begin-prev-date=%.lf/%.lf/%.lf end-prev-date=%.lf/%.lf/%.lf mov_average=%d\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2,mobilav); |
| fputs(line,stdout); |
|
| fputs(line,ficparo); |
|
| fputs(line,ficres); |
|
| } |
} |
| ungetc(c,ficpar); |
|
| |
|
| fscanf(ficpar,"backcast=%d starting-back-date=%lf/%lf/%lf final-back-date=%lf/%lf/%lf mobil_average=%d\n",&backcast,&jback1,&mback1,&anback1,&jback2,&mback2,&anback2,&mobilavproj); |
|
| fprintf(ficparo,"backcast=%d starting-back-date=%.lf/%.lf/%.lf final-back-date=%.lf/%.lf/%.lf mobil_average=%d\n",backcast,jback1,mback1,anback1,jback2,mback2,anback2,mobilavproj); |
|
| fprintf(ficlog,"backcast=%d starting-back-date=%.lf/%.lf/%.lf final-back-date=%.lf/%.lf/%.lf mobil_average=%d\n",backcast,jback1,mback1,anback1,jback2,mback2,anback2,mobilavproj); |
|
| fprintf(ficres,"backcast=%d starting-back-date=%.lf/%.lf/%.lf final-back-date=%.lf/%.lf/%.lf mobil_average=%d\n",backcast,jback1,mback1,anback1,jback2,mback2,anback2,mobilavproj); |
|
| /* day and month of proj2 are not used but only year anproj2.*/ |
|
| |
|
| /* Results */ |
|
| nresult=0; |
|
| while(fgets(line, MAXLINE, ficpar)) { |
while(fgets(line, MAXLINE, ficpar)) { |
| /* If line starts with a # it is a comment */ |
/* If line starts with a # it is a comment */ |
| if (line[0] == '#') { |
if (line[0] == '#') { |
|
Line 11068 Please run with mle=-1 to get a correct
|
Line 11192 Please run with mle=-1 to get a correct
|
| fputs(line,stdout); |
fputs(line,stdout); |
| fputs(line,ficparo); |
fputs(line,ficparo); |
| fputs(line,ficlog); |
fputs(line,ficlog); |
| fputs(line,ficres); |
|
| continue; |
continue; |
| }else |
}else |
| break; |
break; |
| } |
} |
| if (!feof(ficpar)) |
|
| while((num_filled=sscanf(line,"result:%[^\n]\n",resultline)) !=EOF){ |
|
| if (num_filled == 0){ |
dateprev1=anprev1+(mprev1-1)/12.+(jprev1-1)/365.; |
| resultline[0]='\0'; |
dateprev2=anprev2+(mprev2-1)/12.+(jprev2-1)/365.; |
| break; |
|
| } else if (num_filled != 1){ |
if((num_filled=sscanf(line,"pop_based=%d\n",&popbased)) !=EOF){ |
| printf("ERROR %d: result line should be at minimum 'result=' %s\n",num_filled, line); |
if (num_filled != 1) { |
| } |
printf("Error: Not 1 (data)parameters in line but %d, for example:pop_based=0\n, your line=%s . Probably you are running an older format.\n",num_filled,line); |
| nresult++; /* Sum of resultlines */ |
fprintf(ficlog,"Error: Not 1 (data)parameters in line but %d, for example: pop_based=1\n, your line=%s . Probably you are running an older format.\n",num_filled,line); |
| printf("Result %d: result=%s\n",nresult, resultline); |
|
| if(nresult > MAXRESULTLINES){ |
|
| printf("ERROR: Current version of IMaCh limits the number of resultlines to %d, you used %d\n",MAXRESULTLINES,nresult); |
|
| fprintf(ficlog,"ERROR: Current version of IMaCh limits the number of resultlines to %d, you used %d\n",MAXRESULTLINES,nresult); |
|
| goto end; |
goto end; |
| } |
} |
| decoderesult(resultline, nresult); /* Fills TKresult[nresult] combination and Tresult[nresult][k4+1] combination values */ |
printf("pop_based=%d\n",popbased); |
| fprintf(ficparo,"result: %s\n",resultline); |
fprintf(ficlog,"pop_based=%d\n",popbased); |
| fprintf(ficres,"result: %s\n",resultline); |
fprintf(ficparo,"pop_based=%d\n",popbased); |
| fprintf(ficlog,"result: %s\n",resultline); |
fprintf(ficres,"pop_based=%d\n",popbased); |
| while(fgets(line, MAXLINE, ficpar)) { |
} |
| |
|
| |
/* Results */ |
| |
nresult=0; |
| |
do{ |
| |
if(!fgets(line, MAXLINE, ficpar)){ |
| |
endishere=1; |
| |
parameterline=14; |
| |
}else if (line[0] == '#') { |
| /* If line starts with a # it is a comment */ |
/* If line starts with a # it is a comment */ |
| if (line[0] == '#') { |
numlinepar++; |
| numlinepar++; |
fputs(line,stdout); |
| fputs(line,stdout); |
fputs(line,ficparo); |
| fputs(line,ficparo); |
fputs(line,ficlog); |
| fputs(line,ficres); |
continue; |
| fputs(line,ficlog); |
}else if(sscanf(line,"prevforecast=%[^\n]\n",modeltemp)) |
| continue; |
parameterline=11; |
| }else |
else if(sscanf(line,"backcast=%[^\n]\n",modeltemp)) |
| break; |
parameterline=12; |
| |
else if(sscanf(line,"result:%[^\n]\n",modeltemp)) |
| |
parameterline=13; |
| |
else{ |
| |
parameterline=14; |
| } |
} |
| if (feof(ficpar)) |
switch (parameterline){ |
| |
case 11: |
| |
if((num_filled=sscanf(line,"prevforecast=%d starting-proj-date=%lf/%lf/%lf final-proj-date=%lf/%lf/%lf mobil_average=%d\n",&prevfcast,&jproj1,&mproj1,&anproj1,&jproj2,&mproj2,&anproj2,&mobilavproj)) !=EOF){ |
| |
if (num_filled != 8) { |
| |
printf("Error: Not 8 (data)parameters in line but %d, for example:prevforecast=1 starting-proj-date=1/1/1990 final-proj-date=1/1/2000 mobil_average=0\n, your line=%s . Probably you are running an older format.\n",num_filled,line); |
| |
fprintf(ficlog,"Error: Not 8 (data)parameters in line but %d, for example:prevforecast=1 starting-proj-date=1/1/1990 final-proj-date=1/1/2000 mov_average=0\n, your line=%s . Probably you are running an older format.\n",num_filled,line); |
| |
goto end; |
| |
} |
| |
fprintf(ficparo,"prevforecast=%d starting-proj-date=%.lf/%.lf/%.lf final-proj-date=%.lf/%.lf/%.lf mobil_average=%d\n",prevfcast,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2,mobilavproj); |
| |
printf("prevforecast=%d starting-proj-date=%.lf/%.lf/%.lf final-proj-date=%.lf/%.lf/%.lf mobil_average=%d\n",prevfcast,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2,mobilavproj); |
| |
fprintf(ficlog,"prevforecast=%d starting-proj-date=%.lf/%.lf/%.lf final-proj-date=%.lf/%.lf/%.lf mobil_average=%d\n",prevfcast,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2,mobilavproj); |
| |
fprintf(ficres,"prevforecast=%d starting-proj-date=%.lf/%.lf/%.lf final-proj-date=%.lf/%.lf/%.lf mobil_average=%d\n",prevfcast,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2,mobilavproj); |
| |
/* day and month of proj2 are not used but only year anproj2.*/ |
| |
} |
| break; |
break; |
| else{ /* Processess output results for this combination of covariate values */ |
case 12: |
| } |
/*fscanf(ficpar,"backcast=%d starting-back-date=%lf/%lf/%lf final-back-date=%lf/%lf/%lf mobil_average=%d\n",&backcast,&jback1,&mback1,&anback1,&jback2,&mback2,&anback2,&mobilavproj);*/ |
| } /* end while */ |
if((num_filled=sscanf(line,"backcast=%d starting-back-date=%lf/%lf/%lf final-back-date=%lf/%lf/%lf mobil_average=%d\n",&backcast,&jback1,&mback1,&anback1,&jback2,&mback2,&anback2,&mobilavproj)) !=EOF){ |
| |
if (num_filled != 8) { |
| |
printf("Error: Not 8 (data)parameters in line but %d, for example:backcast=1 starting-back-date=1/1/1990 final-back-date=1/1/1970 mobil_average=1\n, your line=%s . Probably you are running an older format.\n",num_filled,line); |
| |
fprintf(ficlog,"Error: Not 8 (data)parameters in line but %d, for example:backcast=1 starting-back-date=1/1/1990 final-back-date=1/1/1970 mobil_average=1\n, your line=%s . Probably you are running an older format.\n",num_filled,line); |
| |
goto end; |
| |
} |
| |
printf("backcast=%d starting-back-date=%.lf/%.lf/%.lf final-back-date=%.lf/%.lf/%.lf mobil_average=%d\n",backcast,jback1,mback1,anback1,jback2,mback2,anback2,mobilavproj); |
| |
fprintf(ficparo,"backcast=%d starting-back-date=%.lf/%.lf/%.lf final-back-date=%.lf/%.lf/%.lf mobil_average=%d\n",backcast,jback1,mback1,anback1,jback2,mback2,anback2,mobilavproj); |
| |
fprintf(ficlog,"backcast=%d starting-back-date=%.lf/%.lf/%.lf final-back-date=%.lf/%.lf/%.lf mobil_average=%d\n",backcast,jback1,mback1,anback1,jback2,mback2,anback2,mobilavproj); |
| |
fprintf(ficres,"backcast=%d starting-back-date=%.lf/%.lf/%.lf final-back-date=%.lf/%.lf/%.lf mobil_average=%d\n",backcast,jback1,mback1,anback1,jback2,mback2,anback2,mobilavproj); |
| |
/* day and month of proj2 are not used but only year anproj2.*/ |
| |
} |
| |
break; |
| |
case 13: |
| |
if((num_filled=sscanf(line,"result:%[^\n]\n",resultline)) !=EOF){ |
| |
if (num_filled == 0){ |
| |
resultline[0]='\0'; |
| |
printf("Warning %d: no result line! It should be at minimum 'result: V2=0 V1=1 or result:.\n%s\n", num_filled, line); |
| |
fprintf(ficlog,"Warning %d: no result line! It should be at minimum 'result: V2=0 V1=1 or result:.\n%s\n", num_filled, line); |
| |
break; |
| |
} else if (num_filled != 1){ |
| |
printf("ERROR %d: result line! It should be at minimum 'result: V2=0 V1=1 or result:.' %s\n",num_filled, line); |
| |
fprintf(ficlog,"ERROR %d: result line! It should be at minimum 'result: V2=0 V1=1 or result:.' %s\n",num_filled, line); |
| |
} |
| |
nresult++; /* Sum of resultlines */ |
| |
printf("Result %d: result=%s\n",nresult, resultline); |
| |
if(nresult > MAXRESULTLINES){ |
| |
printf("ERROR: Current version of IMaCh limits the number of resultlines to %d, you used %d\n",MAXRESULTLINES,nresult); |
| |
fprintf(ficlog,"ERROR: Current version of IMaCh limits the number of resultlines to %d, you used %d\n",MAXRESULTLINES,nresult); |
| |
goto end; |
| |
} |
| |
decoderesult(resultline, nresult); /* Fills TKresult[nresult] combination and Tresult[nresult][k4+1] combination values */ |
| |
fprintf(ficparo,"result: %s\n",resultline); |
| |
fprintf(ficres,"result: %s\n",resultline); |
| |
fprintf(ficlog,"result: %s\n",resultline); |
| |
break; |
| |
case 14: |
| |
if(ncovmodel >2 && nresult==0 ){ |
| |
printf("ERROR: no result lines! It should be at minimum 'result: V2=0 V1=1 or result:.' %s\n",line); |
| |
goto end; |
| |
} |
| |
break; |
| |
default: |
| |
nresult=1; |
| |
decoderesult(".",nresult ); /* No covariate */ |
| |
} |
| |
} /* End switch parameterline */ |
| |
}while(endishere==0); /* End do */ |
| |
|
| /* freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvaraff,nbcode, ncodemax,mint,anint); */ |
/* freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvaraff,nbcode, ncodemax,mint,anint); */ |
| /* ,dateprev1,dateprev2,jprev1, mprev1,anprev1,jprev2, mprev2,anprev2); */ |
/* ,dateprev1,dateprev2,jprev1, mprev1,anprev1,jprev2, mprev2,anprev2); */ |
|
Line 11127 Please run with mle=-1 to get a correct
|
Line 11316 Please run with mle=-1 to get a correct
|
| printinggnuplot(fileresu, optionfilefiname,ageminpar,agemaxpar,fage, prevfcast, backcast, pathc,p); |
printinggnuplot(fileresu, optionfilefiname,ageminpar,agemaxpar,fage, prevfcast, backcast, pathc,p); |
| } |
} |
| printinghtml(fileresu,title,datafile, firstpass, lastpass, stepm, weightopt, \ |
printinghtml(fileresu,title,datafile, firstpass, lastpass, stepm, weightopt, \ |
| model,imx,jmin,jmax,jmean,rfileres,popforecast,prevfcast,backcast, estepm, \ |
model,imx,jmin,jmax,jmean,rfileres,popforecast,mobilav,prevfcast,mobilavproj,backcast, estepm, \ |
| jprev1,mprev1,anprev1,dateprev1,jprev2,mprev2,anprev2,dateprev2); |
jprev1,mprev1,anprev1,dateprev1,jprev2,mprev2,anprev2,dateprev2); |
| |
|
| /*------------ free_vector -------------*/ |
/*------------ free_vector -------------*/ |
|
Line 11180 Please run with mle=-1 to get a correct
|
Line 11369 Please run with mle=-1 to get a correct
|
| mobaverage=mobaverages; |
mobaverage=mobaverages; |
| if (mobilav!=0) { |
if (mobilav!=0) { |
| printf("Movingaveraging observed prevalence\n"); |
printf("Movingaveraging observed prevalence\n"); |
| |
fprintf(ficlog,"Movingaveraging observed prevalence\n"); |
| if (movingaverage(probs, ageminpar, agemaxpar, mobaverage, mobilav)!=0){ |
if (movingaverage(probs, ageminpar, agemaxpar, mobaverage, mobilav)!=0){ |
| fprintf(ficlog," Error in movingaverage mobilav=%d\n",mobilav); |
fprintf(ficlog," Error in movingaverage mobilav=%d\n",mobilav); |
| printf(" Error in movingaverage mobilav=%d\n",mobilav); |
printf(" Error in movingaverage mobilav=%d\n",mobilav); |
|
Line 11189 Please run with mle=-1 to get a correct
|
Line 11379 Please run with mle=-1 to get a correct
|
| /* prevalence(probs, ageminpar, agemaxpar, s, agev, nlstate, imx, Tvar, nbcode, ncodemax, mint, anint, dateprev1, dateprev2, firstpass, lastpass); */ |
/* prevalence(probs, ageminpar, agemaxpar, s, agev, nlstate, imx, Tvar, nbcode, ncodemax, mint, anint, dateprev1, dateprev2, firstpass, lastpass); */ |
| else if (mobilavproj !=0) { |
else if (mobilavproj !=0) { |
| printf("Movingaveraging projected observed prevalence\n"); |
printf("Movingaveraging projected observed prevalence\n"); |
| |
fprintf(ficlog,"Movingaveraging projected observed prevalence\n"); |
| if (movingaverage(probs, ageminpar, agemaxpar, mobaverage, mobilavproj)!=0){ |
if (movingaverage(probs, ageminpar, agemaxpar, mobaverage, mobilavproj)!=0){ |
| fprintf(ficlog," Error in movingaverage mobilavproj=%d\n",mobilavproj); |
fprintf(ficlog," Error in movingaverage mobilavproj=%d\n",mobilavproj); |
| printf(" Error in movingaverage mobilavproj=%d\n",mobilavproj); |
printf(" Error in movingaverage mobilavproj=%d\n",mobilavproj); |
|
Line 11251 Please run with mle=-1 to get a correct
|
Line 11442 Please run with mle=-1 to get a correct
|
| |
|
| for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
| for(k=1; k<=i1;k++){ /* For any combination of dummy covariates, fixed and varying */ |
for(k=1; k<=i1;k++){ /* For any combination of dummy covariates, fixed and varying */ |
| if(TKresult[nres]!= k) |
if(i1 != 1 && TKresult[nres]!= k) |
| continue; |
continue; |
| fprintf(ficreseij,"\n#****** "); |
fprintf(ficreseij,"\n#****** "); |
| printf("\n#****** "); |
printf("\n#****** "); |
|
Line 11324 Please run with mle=-1 to get a correct
|
Line 11515 Please run with mle=-1 to get a correct
|
| |
|
| for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
| for(k=1; k<=i1;k++){ /* For any combination of dummy covariates, fixed and varying */ |
for(k=1; k<=i1;k++){ /* For any combination of dummy covariates, fixed and varying */ |
| if(TKresult[nres]!= k) |
if(i1 != 1 && TKresult[nres]!= k) |
| continue; |
continue; |
| printf("\n#****** Result for:"); |
printf("\n#****** Result for:"); |
| fprintf(ficrest,"\n#****** Result for:"); |
fprintf(ficrest,"\n#****** Result for:"); |
|
Line 11465 Please run with mle=-1 to get a correct
|
Line 11656 Please run with mle=-1 to get a correct
|
| |
|
| for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
| for(k=1; k<=i1;k++){ |
for(k=1; k<=i1;k++){ |
| if(TKresult[nres]!= k) |
if(i1 != 1 && TKresult[nres]!= k) |
| continue; |
continue; |
| fprintf(ficresvpl,"\n#****** "); |
fprintf(ficresvpl,"\n#****** "); |
| printf("\n#****** "); |
printf("\n#****** "); |
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