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Diff for /imach/src/imach.c between versions 1.85 and 1.86

version 1.85, 2003/06/17 13:12:43 version 1.86, 2003/06/17 20:04:08
Line 1 Line 1
 /* $Id$  /* $Id$
   $State$    $State$
   $Log$    $Log$
     Revision 1.86  2003/06/17 20:04:08  brouard
     (Module): Change position of html and gnuplot routines and added
     routine fileappend.
   
   Revision 1.85  2003/06/17 13:12:43  brouard    Revision 1.85  2003/06/17 13:12:43  brouard
   * imach.c (Repository): Check when date of death was earlier that    * imach.c (Repository): Check when date of death was earlier that
   current date of interview. It may happen when the death was just    current date of interview. It may happen when the death was just
Line 19 Line 23
   place. It differs from routine "prevalence" which may be called    place. It differs from routine "prevalence" which may be called
   many times. Probs is memory consuming and must be used with    many times. Probs is memory consuming and must be used with
   parcimony.    parcimony.
   Version 0.95a2 (should output exactly the same maximization than 0.8a2)    Version 0.95a3 (should output exactly the same maximization than 0.8a2)
   
   Revision 1.83  2003/06/10 13:39:11  lievre    Revision 1.83  2003/06/10 13:39:11  lievre
   *** empty log message ***    *** empty log message ***
Line 122 Line 126
 #include <stdlib.h>  #include <stdlib.h>
 #include <unistd.h>  #include <unistd.h>
   
   #include <sys/time.h>
   #include <time.h>
   #include "timeval.h"
   
 #define MAXLINE 256  #define MAXLINE 256
 #define GNUPLOTPROGRAM "gnuplot"  #define GNUPLOTPROGRAM "gnuplot"
 /*#define GNUPLOTPROGRAM "..\\gp37mgw\\wgnuplot"*/  /*#define GNUPLOTPROGRAM "..\\gp37mgw\\wgnuplot"*/
Line 1342  double funcone( double *x) Line 1350  double funcone( double *x)
       ll[s[mw[mi][i]][i]] += 2*weight[i]*lli;        ll[s[mw[mi][i]][i]] += 2*weight[i]*lli;
 /*       printf("i=%6d s1=%1d s2=%1d mi=%1d mw=%1d dh=%3d prob=%10.6f w=%6.4f out=%10.6f sav=%10.6f\n",i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],out[s1][s2],savm[s1][s2]); */  /*       printf("i=%6d s1=%1d s2=%1d mi=%1d mw=%1d dh=%3d prob=%10.6f w=%6.4f out=%10.6f sav=%10.6f\n",i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],out[s1][s2],savm[s1][s2]); */
       if(globpr){        if(globpr){
         fprintf(ficresilk,"%6d %1d %1d %1d %1d %3d %10.6f %6.4f %10.6f %10.6f %10.6f ", \          fprintf(ficresilk,"%ld %6d %1d %1d %1d %1d %3d %10.6f %6.4f\
                 i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],2*weight[i]*lli,out[s1][s2],savm[s1][s2]);   %10.6f %10.6f %10.6f ", \
                   num[i],i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],
                   2*weight[i]*lli,out[s1][s2],savm[s1][s2]);
         for(k=1,l=0.; k<=nlstate; k++)           for(k=1,l=0.; k<=nlstate; k++) 
           fprintf(ficresilk," %10.6f",ll[k]);            fprintf(ficresilk," %10.6f",ll[k]);
         fprintf(ficresilk,"\n");          fprintf(ficresilk,"\n");
Line 1371  void likelione(FILE *ficres,double p[], Line 1381  void likelione(FILE *ficres,double p[],
       printf("Problem with resultfile: %s\n", fileresilk);        printf("Problem with resultfile: %s\n", fileresilk);
       fprintf(ficlog,"Problem with resultfile: %s\n", fileresilk);        fprintf(ficlog,"Problem with resultfile: %s\n", fileresilk);
     }      }
     fprintf(ficresilk, "# individual(line's record) s1 s2 wave# effective_wave# number_of_product_matrix pij weight 2ln(pij)*weight 0pij_x 0pij_(x-stepm) cumulating_loglikeli_by_health_state");      fprintf(ficresilk, "#individual(line's record) s1 s2 wave# effective_wave# number_of_product_matrix pij weight 2ln(pij)*weight 0pij_x 0pij_(x-stepm) cumulating_loglikeli_by_health_state\n");
     fprintf(ficresilk, "# i s1 s2 mi mw dh likeli weight out sav ");      fprintf(ficresilk, "#num_i i s1 s2 mi mw dh likeli weight out sav ");
     /*  i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],2*weight[i]*lli,out[s1][s2],savm[s1][s2]); */      /*  i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],2*weight[i]*lli,out[s1][s2],savm[s1][s2]); */
     for(k=1; k<=nlstate; k++)       for(k=1; k<=nlstate; k++) 
       fprintf(ficresilk," ll[%d]",k);        fprintf(ficresilk," ll[%d]",k);
Line 1380  void likelione(FILE *ficres,double p[], Line 1390  void likelione(FILE *ficres,double p[],
   }    }
   
   *fretone=(*funcone)(p);    *fretone=(*funcone)(p);
   if(globpr !=0)    if(globpr !=0){
     fclose(ficresilk);      fclose(ficresilk);
       if((fichtm=fopen(optionfilehtm,"a"))==NULL) {
         printf("Problem with html file: %s\n", optionfilehtm);
         fprintf(ficlog,"Problem with html file: %s\n", optionfilehtm);
         exit(0);
       }
       else{
         fprintf(fichtm,"\n<br>File of contributions to the likelihood: <a href=\"%s\">%s</a><br>\n",fileresilk);
         fclose(fichtm);
       }
     }
   return;    return;
 }  }
   
Line 1984  void  concatwav(int wav[], int **dh, int Line 2004  void  concatwav(int wav[], int **dh, int
             else if(j<0){              else if(j<0){
               printf("Error! Negative delay (%d to death) between waves %d and %d of individual %ld at line %d who is aged %.1f with statuses from %d to %d\n ",j,mw[mi][i],mw[mi+1][i],num[i], i,agev[mw[mi][i]][i],s[mw[mi][i]][i] ,s[mw[mi+1][i]][i]);                printf("Error! Negative delay (%d to death) between waves %d and %d of individual %ld at line %d who is aged %.1f with statuses from %d to %d\n ",j,mw[mi][i],mw[mi+1][i],num[i], i,agev[mw[mi][i]][i],s[mw[mi][i]][i] ,s[mw[mi+1][i]][i]);
               j=1; /* Careful Patch */                j=1; /* Careful Patch */
               printf("   We assumed that the date of interview was correct (and not the date of death) and postponed the death %d month(s) (one stepm) after the interview.\n  You MUST fixe the contradiction between dates.\n",stepm);                printf("   We assumed that the date of interview was correct (and not the date of death) and postponed the death %d month(s) (one stepm) after the interview.\n  You MUST fix the contradiction between dates.\n",stepm);
               printf("Error! Negative delay (%d to death) between waves %d and %d of individual %ld at line %d who is aged %.1f with statuses from %d to %d\n ",j,mw[mi][i],mw[mi+1][i],num[i], i,agev[mw[mi][i]][i],s[mw[mi][i]][i] ,s[mw[mi+1][i]][i]);                printf("Error! Negative delay (%d to death) between waves %d and %d of individual %ld at line %d who is aged %.1f with statuses from %d to %d\n ",j,mw[mi][i],mw[mi+1][i],num[i], i,agev[mw[mi][i]][i],s[mw[mi][i]][i] ,s[mw[mi+1][i]][i]);
               fprintf(ficlog,"   We assumed that the date of interview was correct (and not the date of death) and postponed the death %d month(s) (one stepm) after the interview.\n  You MUST fix the contradiction between dates.\n",stepm);                fprintf(ficlog,"   We assumed that the date of interview was correct (and not the date of death) and postponed the death %d month(s) (one stepm) after the interview.\n  You MUST fix the contradiction between dates.\n",stepm);
             }              }
Line 3591  populforecast(char fileres[], double anp Line 3611  populforecast(char fileres[], double anp
   fclose(ficrespop);    fclose(ficrespop);
 } /* End of popforecast */  } /* End of popforecast */
   
   int fileappend(FILE *fichier, char *optionfile)
   {
     if((fichier=fopen(optionfile,"a"))==NULL) {
       printf("Problem with file: %s\n", optionfile);
       fprintf(ficlog,"Problem with file: %s\n", optionfile);
       return (1);
     }
   
   }
 /***********************************************/  /***********************************************/
 /**************** Main Program *****************/  /**************** Main Program *****************/
 /***********************************************/  /***********************************************/
Line 3644  int main(int argc, char *argv[]) Line 3673  int main(int argc, char *argv[])
   
   
   char z[1]="c", occ;    char z[1]="c", occ;
 #include <sys/time.h>  
 #include <time.h>  
   char stra[80], strb[80], strc[80], strd[80],stre[80],modelsav[80];    char stra[80], strb[80], strc[80], strd[80],stre[80],modelsav[80];
   char *strt, *strtend;    char *strt, *strtend;
   char *stratrunc;    char *stratrunc;
Line 3664  int main(int argc, char *argv[]) Line 3692  int main(int argc, char *argv[])
   tm = *localtime(&start_time.tv_sec);    tm = *localtime(&start_time.tv_sec);
   tmg = *gmtime(&start_time.tv_sec);    tmg = *gmtime(&start_time.tv_sec);
   strt=asctime(&tm);    strt=asctime(&tm);
   
 /*  printf("Localtime (at start)=%s",strt); */  /*  printf("Localtime (at start)=%s",strt); */
 /*  tp.tv_sec = tp.tv_sec +86400; */  /*  tp.tv_sec = tp.tv_sec +86400; */
 /*  tm = *localtime(&start_time.tv_sec); */  /*  tm = *localtime(&start_time.tv_sec); */
Line 3713  int main(int argc, char *argv[]) Line 3742  int main(int argc, char *argv[])
   fprintf(ficlog,"\n%s\n%s",version,fullversion);    fprintf(ficlog,"\n%s\n%s",version,fullversion);
   fprintf(ficlog,"\nEnter the parameter file name: ");    fprintf(ficlog,"\nEnter the parameter file name: ");
   fprintf(ficlog,"pathtot=%s, path=%s, optionfile=%s optionfilext=%s optionfilefiname=%s\n",pathtot,path,optionfile,optionfilext,optionfilefiname);    fprintf(ficlog,"pathtot=%s, path=%s, optionfile=%s optionfilext=%s optionfilefiname=%s\n",pathtot,path,optionfile,optionfilext,optionfilefiname);
   printf("Localtime (at start)=%s",strt);   
   fprintf(ficlog,"Localtime (at start)=%s",strt);     printf("Localtime (at start)=%s",strt);
     fprintf(ficlog,"Localtime (at start)=%s",strt);
   fflush(ficlog);    fflush(ficlog);
   
   /* */    /* */
Line 4224  int main(int argc, char *argv[]) Line 4254  int main(int argc, char *argv[])
      }       }
      scanf("%d",i);*/       scanf("%d",i);*/
           
     /*------------ gnuplot -------------*/
     strcpy(optionfilegnuplot,optionfilefiname);
     strcat(optionfilegnuplot,".gp");
     if((ficgp=fopen(optionfilegnuplot,"w"))==NULL) {
       printf("Problem with file %s",optionfilegnuplot);
     }
     else{
       fprintf(ficgp,"\n# %s\n", version); 
       fprintf(ficgp,"# %s\n", optionfilegnuplot); 
       fprintf(ficgp,"set missing 'NaNq'\n");
     }
     fclose(ficgp);
     /*--------- index.htm --------*/
   
     strcpy(optionfilehtm,optionfile);
     strcat(optionfilehtm,".htm");
     if((fichtm=fopen(optionfilehtm,"w"))==NULL)    {
       printf("Problem with %s \n",optionfilehtm), exit(0);
     }
   
     fprintf(fichtm,"<body> <font size=\"2\">%s <br> %s</font> \
   <hr size=\"2\" color=\"#EC5E5E\"> \n\
   Title=%s <br>Datafile=%s Firstpass=%d Lastpass=%d Stepm=%d Weight=%d Model=%s<br>\n\
   \n\
   <hr  size=\"2\" color=\"#EC5E5E\">\
    <ul><li><h4>Parameter files</h4>\n\
    - Copy of the parameter file: <a href=\"o%s\">o%s</a><br>\n\
    - Log file of the run: <a href=\"%s\">%s</a><br>\n\
    - Gnuplot file name: <a href=\"%s\">%s</a>\n\
    - Date and time at start: %s</ul>\n",\
             version,fullversion,title,datafile,firstpass,lastpass,stepm, weightopt,\
             model,fileres,fileres,\
             filelog,filelog,optionfilegnuplot,optionfilegnuplot,strt);
     fclose(fichtm);
   
   /* Calculates basic frequencies. Computes observed prevalence at single age    /* Calculates basic frequencies. Computes observed prevalence at single age
      and prints on file fileres'p'. */       and prints on file fileres'p'. */
   freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvaraff,nbcode, ncodemax,mint,anint);    freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvaraff,nbcode, ncodemax,mint,anint);
   
     if(fileappend(fichtm, optionfilehtm)){
       fprintf(fichtm,"<br>Total number of observations=%d <br>\n\
   Youngest age at first (selected) pass %.2f, oldest age %.2f<br>\n\
   Interval (in months) between two waves: Min=%d Max=%d Mean=%.2lf<br>\n",\
           imx,agemin,agemax,jmin,jmax,jmean);
       fclose(fichtm);
     }
     pmmij= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */      pmmij= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
     oldms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */      oldms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
     newms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */      newms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
Line 4239  int main(int argc, char *argv[]) Line 4311  int main(int argc, char *argv[])
      so we point p on param[1][1] so that p[1] maps on param[1][1][1] */       so we point p on param[1][1] so that p[1] maps on param[1][1][1] */
   p=param[1][1]; /* *(*(*(param +1)+1)+0) */    p=param[1][1]; /* *(*(*(param +1)+1)+0) */
   
   globpr=0; /* To get ipmx number of contributions and sum of weights*/    globpr=0; /* To get the number ipmx of contributions and the sum of weights*/
   likelione(ficres, p, npar, nlstate, &globpr, &ipmx, &sw, &fretone, funcone); /* Prints the contributions to the likelihood */    likelione(ficres, p, npar, nlstate, &globpr, &ipmx, &sw, &fretone, funcone); /* Prints the contributions to the likelihood */
   printf("First Likeli=%12.6f ipmx=%ld sw=%12.6f",fretone,ipmx,sw);    printf("First Likeli=%12.6f ipmx=%ld sw=%12.6f",fretone,ipmx,sw);
   for (k=1; k<=npar;k++)    for (k=1; k<=npar;k++)
Line 4413  int main(int argc, char *argv[]) Line 4485  int main(int argc, char *argv[])
   fprintf(ficparo,"popforecast=%d popfile=%s popfiledate=%.lf/%.lf/%.lf last-popfiledate=%.lf/%.lf/%.lf\n",popforecast,popfile,jpyram,mpyram,anpyram,jpyram1,mpyram1,anpyram1);    fprintf(ficparo,"popforecast=%d popfile=%s popfiledate=%.lf/%.lf/%.lf last-popfiledate=%.lf/%.lf/%.lf\n",popforecast,popfile,jpyram,mpyram,anpyram,jpyram1,mpyram1,anpyram1);
   fprintf(ficres,"popforecast=%d popfile=%s popfiledate=%.lf/%.lf/%.lf last-popfiledate=%.lf/%.lf/%.lf\n",popforecast,popfile,jpyram,mpyram,anpyram,jpyram1,mpyram1,anpyram1);    fprintf(ficres,"popforecast=%d popfile=%s popfiledate=%.lf/%.lf/%.lf last-popfiledate=%.lf/%.lf/%.lf\n",popforecast,popfile,jpyram,mpyram,anpyram,jpyram1,mpyram1,anpyram1);
   
   freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvaraff,nbcode, ncodemax,mint,anint);    /*  freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvaraff,nbcode, ncodemax,mint,anint);*/
   /*,dateprev1,dateprev2,jprev1, mprev1,anprev1,jprev2, mprev2,anprev2);*/    /*,dateprev1,dateprev2,jprev1, mprev1,anprev1,jprev2, mprev2,anprev2);*/
   
   /*------------ gnuplot -------------*/  
   strcpy(optionfilegnuplot,optionfilefiname);  
   strcat(optionfilegnuplot,".gp");  
   if((ficgp=fopen(optionfilegnuplot,"w"))==NULL) {  
     printf("Problem with file %s",optionfilegnuplot);  
   }  
   else{  
     fprintf(ficgp,"\n# %s\n", version);   
     fprintf(ficgp,"# %s\n", optionfilegnuplot);   
     fprintf(ficgp,"set missing 'NaNq'\n");  
   }  
   fclose(ficgp);  
   printinggnuplot(fileres, ageminpar,agemaxpar,fage, pathc,p);    printinggnuplot(fileres, ageminpar,agemaxpar,fage, pathc,p);
   /*--------- index.htm --------*/  
   
   strcpy(optionfilehtm,optionfile);  
   strcat(optionfilehtm,".htm");  
   if((fichtm=fopen(optionfilehtm,"w"))==NULL)    {  
     printf("Problem with %s \n",optionfilehtm), exit(0);  
   }  
   
   fprintf(fichtm,"<body> <font size=\"2\">%s </font> <hr size=\"2\" color=\"#EC5E5E\"> \n\  
 Title=%s <br>Datafile=%s Firstpass=%d Lastpass=%d Stepm=%d Weight=%d Model=%s<br>\n\  
 \n\  
 Total number of observations=%d <br>\n\  
 Youngest age at first (selected) pass %.2f, oldest age %.2f<br>\n\  
 Interval (in months) between two waves: Min=%d Max=%d Mean=%.2lf<br>\n\  
 <hr  size=\"2\" color=\"#EC5E5E\">\  
  <ul><li><h4>Parameter files</h4>\n\  
  - Copy of the parameter file: <a href=\"o%s\">o%s</a><br>\n\  
  - Log file of the run: <a href=\"%s\">%s</a><br>\n\  
  - Gnuplot file name: <a href=\"%s\">%s</a></ul>\n",\  
           version,title,datafile,firstpass,lastpass,stepm, weightopt,\  
           model,imx,agemin,agemax,jmin,jmax,jmean,fileres,fileres,\  
           filelog,filelog,optionfilegnuplot,optionfilegnuplot);  
   fclose(fichtm);  
   
   printinghtml(fileres,title,datafile, firstpass, lastpass, stepm, weightopt,\    printinghtml(fileres,title,datafile, firstpass, lastpass, stepm, weightopt,\
                model,imx,jmin,jmax,jmean,rfileres,popforecast,estepm,\                 model,imx,jmin,jmax,jmean,rfileres,popforecast,estepm,\
Line 4800  ageminpar, agemax, s[lastpass][imx], age Line 4837  ageminpar, agemax, s[lastpass][imx], age
   printf("Total time was %d Sec. %d uSec.\n", end_time.tv_sec -start_time.tv_sec, end_time.tv_usec -start_time.tv_usec);    printf("Total time was %d Sec. %d uSec.\n", end_time.tv_sec -start_time.tv_sec, end_time.tv_usec -start_time.tv_usec);
   fprintf(ficlog,"Total time was %d Sec. %d uSec.\n", end_time.tv_sec -start_time.tv_sec, end_time.tv_usec -start_time.tv_usec);    fprintf(ficlog,"Total time was %d Sec. %d uSec.\n", end_time.tv_sec -start_time.tv_sec, end_time.tv_usec -start_time.tv_usec);
   /*  printf("Total time was %d uSec.\n", total_usecs);*/    /*  printf("Total time was %d uSec.\n", total_usecs);*/
     if(fileappend(fichtm,optionfilehtm)){
       fprintf(fichtm,"<br>Localtime at start %s and at end=%s<br>",strt, strtend);
       fclose(fichtm);
     }
   /*------ End -----------*/    /*------ End -----------*/
   
   end:    end:
Removed from v.1.85  
changed lines
  Added in v.1.86

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