--- imach/src/imach.c 2006/03/22 17:13:53 1.124 +++ imach/src/imach.c 2006/06/30 13:02:05 1.128 @@ -1,6 +1,31 @@ -/* $Id: imach.c,v 1.124 2006/03/22 17:13:53 lievre Exp $ +/* $Id: imach.c,v 1.128 2006/06/30 13:02:05 brouard Exp $ $State: Exp $ $Log: imach.c,v $ + Revision 1.128 2006/06/30 13:02:05 brouard + (Module): Clarifications on computing e.j + + Revision 1.127 2006/04/28 18:11:50 brouard + (Module): Yes the sum of survivors was wrong since + imach-114 because nhstepm was no more computed in the age + loop. Now we define nhstepma in the age loop. + (Module): In order to speed up (in case of numerous covariates) we + compute health expectancies (without variances) in a first step + and then all the health expectancies with variances or standard + deviation (needs data from the Hessian matrices) which slows the + computation. + In the future we should be able to stop the program is only health + expectancies and graph are needed without standard deviations. + + Revision 1.126 2006/04/28 17:23:28 brouard + (Module): Yes the sum of survivors was wrong since + imach-114 because nhstepm was no more computed in the age + loop. Now we define nhstepma in the age loop. + Version 0.98h + + Revision 1.125 2006/04/04 15:20:31 lievre + Errors in calculation of health expectancies. Age was not initialized. + Forecasting file added. + Revision 1.124 2006/03/22 17:13:53 lievre Parameters are printed with %lf instead of %f (more numbers after the comma). The log-likelihood is printed in the log file @@ -361,11 +386,11 @@ extern int errno; #define ODIRSEPARATOR '/' #endif -/* $Id: imach.c,v 1.124 2006/03/22 17:13:53 lievre Exp $ */ +/* $Id: imach.c,v 1.128 2006/06/30 13:02:05 brouard Exp $ */ /* $State: Exp $ */ -char version[]="Imach version 0.98g, March 2006, INED-EUROREVES-Institut de longevite "; -char fullversion[]="$Revision: 1.124 $ $Date: 2006/03/22 17:13:53 $"; +char version[]="Imach version 0.98i, June 2006, INED-EUROREVES-Institut de longevite "; +char fullversion[]="$Revision: 1.128 $ $Date: 2006/06/30 13:02:05 $"; char strstart[80]; char optionfilext[10], optionfilefiname[FILENAMELENGTH]; int erreur, nberr=0, nbwarn=0; /* Error number, number of errors number of warnings */ @@ -1322,10 +1347,11 @@ double ***hpxij(double ***po, int nhstep for(i=1; i<=nlstate+ndeath; i++) for(j=1;j<=nlstate+ndeath;j++) { po[i][j][h]=newm[i][j]; - /*printf("i=%d j=%d h=%d po[i][j][h]=%f ",i,j,h,po[i][j][h]); - */ + /*if(h==nhstepm) printf("po[%d][%d][%d]=%f ",i,j,h,po[i][j][h]);*/ } + /*printf("h=%d ",h);*/ } /* end h */ +/* printf("\n H=%d \n",h); */ return po; } @@ -2097,7 +2123,6 @@ void freqsummary(char fileres[], int ia for(i=iagemin; i <= iagemax+3; i++){ if(i==iagemax+3){ fprintf(ficlog,"Total"); - fprintf(fichtm,"
Total
"); }else{ if(first==1){ first=0; @@ -2243,7 +2268,8 @@ void prevalence(double ***probs, double if( i <= iagemax){ if(posprop>=1.e-5){ probs[i][jk][j1]= prop[jk][i]/posprop; - } + } else + printf("Warning Observed prevalence probs[%d][%d][%d]=%lf because of lack of cases\n",jk,i,j1,probs[i][jk][j1]); } }/* end jk */ }/* end i */ @@ -2458,11 +2484,12 @@ void tricode(int *Tvar, int **nbcode, in /*********** Health Expectancies ****************/ -void evsij(char fileres[], double ***eij, double x[], int nlstate, int stepm, int bage, int fage, double **oldm, double **savm, int cij, int estepm,char strstart[] ) +void evsij(double ***eij, double x[], int nlstate, int stepm, int bage, int fage, double **oldm, double **savm, int cij, int estepm,char strstart[] ) { /* Health expectancies, no variances */ int i, j, nhstepm, hstepm, h, nstepm, k, cptj, cptj2, i2, j2; + int nhstepma, nstepma; /* Decreasing with age */ double age, agelim, hf; double ***p3mat; double eip; @@ -2509,18 +2536,28 @@ void evsij(char fileres[], double ***eij hstepm=hstepm/stepm; /* Typically in stepm units, if stepm=6 & estepm=24 , = 24/6 months = 4 */ agelim=AGESUP; - /* nhstepm age range expressed in number of stepm */ - nstepm=(int) rint((agelim-age)*YEARM/stepm); + /* If stepm=6 months */ + /* Computed by stepm unit matrices, product of hstepm matrices, stored + in an array of nhstepm length: nhstepm=10, hstepm=4, stepm=6 months */ + +/* nhstepm age range expressed in number of stepm */ + nstepm=(int) rint((agelim-bage)*YEARM/stepm); /* Biggest nstepm */ /* Typically if 20 years nstepm = 20*12/6=40 stepm */ /* if (stepm >= YEARM) hstepm=1;*/ nhstepm = nstepm/hstepm;/* Expressed in hstepm, typically nhstepm=40/4=10 */ p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm); - for (age=bage; age<=fage; age ++){ /* If stepm=6 months */ - /* Computed by stepm unit matrices, product of hstepm matrices, stored - in an array of nhstepm length: nhstepm=10, hstepm=4, stepm=6 months */ + for (age=bage; age<=fage; age ++){ + nstepma=(int) rint((agelim-bage)*YEARM/stepm); /* Biggest nstepm */ + /* Typically if 20 years nstepm = 20*12/6=40 stepm */ + /* if (stepm >= YEARM) hstepm=1;*/ + nhstepma = nstepma/hstepm;/* Expressed in hstepm, typically nhstepma=40/4=10 */ + + /* If stepm=6 months */ + /* Computed by stepm unit matrices, product of hstepma matrices, stored + in an array of nhstepma length: nhstepma=10, hstepm=4, stepm=6 months */ - hpxij(p3mat,nhstepm,age,hstepm,x,nlstate,stepm,oldm, savm, cij); + hpxij(p3mat,nhstepma,age,hstepm,x,nlstate,stepm,oldm, savm, cij); hf=hstepm*stepm/YEARM; /* Duration of hstepm expressed in year unit. */ @@ -2555,13 +2592,14 @@ void evsij(char fileres[], double ***eij } -void cvevsij(char fileres[], double ***eij, double x[], int nlstate, int stepm, int bage, int fage, double **oldm, double **savm, int cij, int estepm,double delti[],double **matcov,char strstart[] ) +void cvevsij(double ***eij, double x[], int nlstate, int stepm, int bage, int fage, double **oldm, double **savm, int cij, int estepm,double delti[],double **matcov,char strstart[] ) { /* Covariances of health expectancies eij and of total life expectancies according to initial status i, ei. . */ int i, j, nhstepm, hstepm, h, nstepm, k, cptj, cptj2, i2, j2, ij, ji; + int nhstepma, nstepma; /* Decreasing with age */ double age, agelim, hf; double ***p3matp, ***p3matm, ***varhe; double **dnewm,**doldm; @@ -2635,7 +2673,7 @@ void cvevsij(char fileres[], double ***e /* If stepm=6 months */ /* nhstepm age range expressed in number of stepm */ agelim=AGESUP; - nstepm=(int) rint((agelim-age)*YEARM/stepm); + nstepm=(int) rint((agelim-bage)*YEARM/stepm); /* Typically if 20 years nstepm = 20*12/6=40 stepm */ /* if (stepm >= YEARM) hstepm=1;*/ nhstepm = nstepm/hstepm;/* Expressed in hstepm, typically nhstepm=40/4=10 */ @@ -2648,10 +2686,15 @@ void cvevsij(char fileres[], double ***e gm=matrix(0,nhstepm,1,nlstate*nlstate); for (age=bage; age<=fage; age ++){ - - /* Computed by stepm unit matrices, product of hstepm matrices, stored - in an array of nhstepm length: nhstepm=10, hstepm=4, stepm=6 months */ - + nstepma=(int) rint((agelim-bage)*YEARM/stepm); /* Biggest nstepm */ + /* Typically if 20 years nstepm = 20*12/6=40 stepm */ + /* if (stepm >= YEARM) hstepm=1;*/ + nhstepma = nstepma/hstepm;/* Expressed in hstepm, typically nhstepma=40/4=10 */ + + /* If stepm=6 months */ + /* Computed by stepm unit matrices, product of hstepma matrices, stored + in an array of nhstepma length: nhstepma=10, hstepm=4, stepm=6 months */ + hf=hstepm*stepm/YEARM; /* Duration of hstepm expressed in year unit. */ /* Computing Variances of health expectancies */ @@ -2702,6 +2745,7 @@ void cvevsij(char fileres[], double ***e varhe[ij][ji][(int)age] += doldm[ij][ji]*hf*hf; } } + /* Computing expectancies */ hpxij(p3matm,nhstepm,age,hstepm,x,nlstate,stepm,oldm, savm, cij); for(i=1; i<=nlstate;i++) @@ -2829,7 +2873,7 @@ void varevsij(char optionfilefiname[], d pstamp(ficresvij); fprintf(ficresvij,"# Variance and covariance of health expectancies e.j \n# (weighted average of eij where weights are "); if(popbased==1) - fprintf(ficresvij,"the age specific prevalence observed in the population i.e cross-sectionally\n in each health state (popbased=1)"); + fprintf(ficresvij,"the age specific prevalence observed (cross-sectionally) in the population i.e cross-sectionally\n in each health state (popbased=1) (mobilav=%d\n",mobilav); else fprintf(ficresvij,"the age specific period (stable) prevalences in each health state \n"); fprintf(ficresvij,"# Age"); @@ -2857,8 +2901,7 @@ void varevsij(char optionfilefiname[], d /* hstepm beeing the number of stepms, if hstepm=1 the length of hstepm is stepm. nhstepm is the number of hstepm from age to agelim nstepm is the number of stepm from age to agelin. - Look at hpijx to understand the reason of that which relies in memory size - and note for a fixed period like k years */ + Look at function hpijx to understand why (it is linked to memory size questions) */ /* We decided (b) to get a life expectancy respecting the most precise curvature of the survival function given by stepm (the optimization length). Unfortunately it means that if the survival funtion is printed every two years of age and if @@ -2924,7 +2967,7 @@ void varevsij(char optionfilefiname[], d } } - for(j=1; j<= nlstate; j++){ + for(j=1; j<= nlstate; j++){ /* Sum of wi * eij = e.j */ for(h=0; h<=nhstepm; h++){ for(i=1, gm[h][j]=0.;i<=nlstate;i++) gm[h][j] += prlim[i][i]*p3mat[i][j][h]; @@ -3484,10 +3527,12 @@ void printinghtml(char fileres[], char t - Period (stable) prevalence in each health state: %s
\n", subdirf2(fileres,"pl"),subdirf2(fileres,"pl")); fprintf(fichtm,"\ - - (a) Life expectancies by health status at initial age, (b) health expectancies by health status at initial age: ei., eij . If one or more covariate are included, specific tables for each value of the covariate are output in sequences within the same file (estepm=%2d months): \ - %s
\n", + - (a) Life expectancies by health status at initial age, ei. (b) health expectancies by health status at initial age, eij . If one or more covariates are included, specific tables for each value of the covariate are output in sequences within the same file (estepm=%2d months): \ + %s
\n", estepm,subdirf2(fileres,"e"),subdirf2(fileres,"e")); - + fprintf(fichtm,"\ + - Population projections by age and states: \ + %s
\n", subdirf2(fileres,"f"),subdirf2(fileres,"f")); fprintf(fichtm," \n