--- imach/src/imach.c 2014/09/02 09:24:05 1.160 +++ imach/src/imach.c 2015/01/04 09:35:48 1.178 @@ -1,6 +1,77 @@ -/* $Id: imach.c,v 1.160 2014/09/02 09:24:05 brouard Exp $ +/* $Id: imach.c,v 1.178 2015/01/04 09:35:48 brouard Exp $ $State: Exp $ $Log: imach.c,v $ + Revision 1.178 2015/01/04 09:35:48 brouard + *** empty log message *** + + Revision 1.177 2015/01/03 18:40:56 brouard + Summary: Still testing ilc32 on OSX + + Revision 1.176 2015/01/03 16:45:04 brouard + *** empty log message *** + + Revision 1.175 2015/01/03 16:33:42 brouard + *** empty log message *** + + Revision 1.174 2015/01/03 16:15:49 brouard + Summary: Still in cross-compilation + + Revision 1.173 2015/01/03 12:06:26 brouard + Summary: trying to detect cross-compilation + + Revision 1.172 2014/12/27 12:07:47 brouard + Summary: Back from Visual Studio and Intel, options for compiling for Windows XP + + Revision 1.171 2014/12/23 13:26:59 brouard + Summary: Back from Visual C + + Still problem with utsname.h on Windows + + Revision 1.170 2014/12/23 11:17:12 brouard + Summary: Cleaning some \%% back to %% + + The escape was mandatory for a specific compiler (which one?), but too many warnings. + + Revision 1.169 2014/12/22 23:08:31 brouard + Summary: 0.98p + + Outputs some informations on compiler used, OS etc. Testing on different platforms. + + Revision 1.168 2014/12/22 15:17:42 brouard + Summary: update + + Revision 1.167 2014/12/22 13:50:56 brouard + Summary: Testing uname and compiler version and if compiled 32 or 64 + + Testing on Linux 64 + + Revision 1.166 2014/12/22 11:40:47 brouard + *** empty log message *** + + Revision 1.165 2014/12/16 11:20:36 brouard + Summary: After compiling on Visual C + + * imach.c (Module): Merging 1.61 to 1.162 + + Revision 1.164 2014/12/16 10:52:11 brouard + Summary: Merging with Visual C after suppressing some warnings for unused variables. Also fixing Saito's bug 0.98Xn + + * imach.c (Module): Merging 1.61 to 1.162 + + Revision 1.163 2014/12/16 10:30:11 brouard + * imach.c (Module): Merging 1.61 to 1.162 + + Revision 1.162 2014/09/25 11:43:39 brouard + Summary: temporary backup 0.99! + + Revision 1.1 2014/09/16 11:06:58 brouard + Summary: With some code (wrong) for nlopt + + Author: + + Revision 1.161 2014/09/15 20:41:41 brouard + Summary: Problem with macro SQR on Intel compiler + Revision 1.160 2014/09/02 09:24:05 brouard *** empty log message *** @@ -478,9 +549,8 @@ end */ +#define POWELL /* Instead of NLOPT */ - - #include #include #include @@ -488,12 +558,19 @@ #ifdef _WIN32 #include +#include +#include #else #include #endif #include #include + +#if defined(__GNUC__) +#include /* Doesn't work on Windows */ +#endif + #include #include /* extern int errno; */ @@ -512,6 +589,14 @@ #include #endif + +#ifdef NLOPT +#include +typedef struct { + double (* function)(double [] ); +} myfunc_data ; +#endif + /* #include */ /* #define _(String) gettext (String) */ @@ -536,7 +621,7 @@ #define YEARM 12. /**< Number of months per year */ #define AGESUP 130 #define AGEBASE 40 -#define AGEGOMP 10. /**< Minimal age for Gompertz adjustment */ +#define AGEGOMP 10 /**< Minimal age for Gompertz adjustment */ #ifdef _WIN32 #define DIRSEPARATOR '\\' #define CHARSEPARATOR "\\" @@ -547,11 +632,11 @@ #define ODIRSEPARATOR '\\' #endif -/* $Id: imach.c,v 1.160 2014/09/02 09:24:05 brouard Exp $ */ +/* $Id: imach.c,v 1.178 2015/01/04 09:35:48 brouard Exp $ */ /* $State: Exp $ */ -char version[]="Imach version 0.98nX, August 2014,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121)"; -char fullversion[]="$Revision: 1.160 $ $Date: 2014/09/02 09:24:05 $"; +char version[]="Imach version 0.98p, December 2014,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121), Intel Software 2015"; +char fullversion[]="$Revision: 1.178 $ $Date: 2015/01/04 09:35:48 $"; char strstart[80]; char optionfilext[10], optionfilefiname[FILENAMELENGTH]; int erreur=0, nberr=0, nbwarn=0; /* Error number, number of errors number of warnings */ @@ -581,6 +666,7 @@ int **mw; /* mw[mi][i] is number of the int **dh; /* dh[mi][i] is number of steps between mi,mi+1 for this individual */ int **bh; /* bh[mi][i] is the bias (+ or -) for this individual if the delay between * wave mi and wave mi+1 is not an exact multiple of stepm. */ +int countcallfunc=0; /* Count the number of calls to func */ double jmean=1; /* Mean space between 2 waves */ double **matprod2(); /* test */ double **oldm, **newm, **savm; /* Working pointers to matrices */ @@ -664,7 +750,12 @@ static double maxarg1,maxarg2; #define SIGN(a,b) ((b)>0.0 ? fabs(a) : -fabs(a)) #define rint(a) floor(a+0.5) - +/* http://www.thphys.uni-heidelberg.de/~robbers/cmbeasy/doc/html/myutils_8h-source.html */ +/* #define mytinydouble 1.0e-16 */ +/* #define DEQUAL(a,b) (fabs((a)-(b)) *fc) { + while (*fb > *fc) { /* Declining fa, fb, fc */ r=(*bx-*ax)*(*fb-*fc); q=(*bx-*cx)*(*fb-*fa); u=(*bx)-((*bx-*cx)*q-(*bx-*ax)*r)/ - (2.0*SIGN(FMAX(fabs(q-r),TINY),q-r)); - ulim=(*bx)+GLIMIT*(*cx-*bx); - if ((*bx-u)*(u-*cx) > 0.0) { + (2.0*SIGN(FMAX(fabs(q-r),TINY),q-r)); /* Minimum abscisse of a parabolic estimated from (a,fa), (b,fb) and (c,fc). */ + ulim=(*bx)+GLIMIT*(*cx-*bx); /* Maximum abscisse where function can be evaluated */ + if ((*bx-u)*(u-*cx) > 0.0) { /* if u between b and c */ fu=(*func)(u); - } else if ((*cx-u)*(u-ulim) > 0.0) { +#ifdef DEBUG + /* f(x)=A(x-u)**2+f(u) */ + double A, fparabu; + A= (*fb - *fa)/(*bx-*ax)/(*bx+*ax-2*u); + fparabu= *fa - A*(*ax-u)*(*ax-u); + printf("mnbrak (*ax=%.12f, *fa=%.12lf), (*bx=%.12f, *fb=%.12lf), (*cx=%.12f, *fc=%.12lf), (*u=%.12f, fu=%.12lf, fparabu=%.12f)\n",*ax,*fa,*bx,*fb,*cx,*fc,u,fu, fparabu); + fprintf(ficlog, "mnbrak (*ax=%.12f, *fa=%.12lf), (*bx=%.12f, *fb=%.12lf), (*cx=%.12f, *fc=%.12lf), (*u=%.12f, fu=%.12lf, fparabu=%.12f)\n",*ax,*fa,*bx,*fb,*cx,*fc,u,fu, fparabu); +#endif + } else if ((*cx-u)*(u-ulim) > 0.0) { /* u is after c but before ulim */ fu=(*func)(u); if (fu < *fc) { SHFT(*bx,*cx,u,*cx+GOLD*(*cx-*bx)) SHFT(*fb,*fc,fu,(*func)(u)) } - } else if ((u-ulim)*(ulim-*cx) >= 0.0) { + } else if ((u-ulim)*(ulim-*cx) >= 0.0) { /* u outside ulim (verifying that ulim is beyond c) */ u=ulim; fu=(*func)(u); } else { @@ -1225,7 +1337,11 @@ void mnbrak(double *ax, double *bx, doub } /*************** linmin ************************/ - +/* Given an n -dimensional point p[1..n] and an n -dimensional direction xi[1..n] , moves and +resets p to where the function func(p) takes on a minimum along the direction xi from p , +and replaces xi by the actual vector displacement that p was moved. Also returns as fret +the value of func at the returned location p . This is actually all accomplished by calling the +routines mnbrak and brent .*/ int ncom; double *pcom,*xicom; double (*nrfunc)(double []); @@ -1251,8 +1367,8 @@ void linmin(double p[], double xi[], int } ax=0.0; xx=1.0; - mnbrak(&ax,&xx,&bx,&fa,&fx,&fb,f1dim); - *fret=brent(ax,xx,bx,f1dim,TOL,&xmin); + mnbrak(&ax,&xx,&bx,&fa,&fx,&fb,f1dim); /* Find a bracket a,x,b in direction n=xi ie xicom */ + *fret=brent(ax,xx,bx,f1dim,TOL,&xmin); /* Find a minimum P+lambda n in that direction (lambdamin), with TOL between abscisses */ #ifdef DEBUG printf("retour brent fret=%.12e xmin=%.12e\n",*fret,xmin); fprintf(ficlog,"retour brent fret=%.12e xmin=%.12e\n",*fret,xmin); @@ -1265,20 +1381,16 @@ void linmin(double p[], double xi[], int free_vector(pcom,1,n); } -char *asc_diff_time(long time_sec, char ascdiff[]) -{ - long sec_left, days, hours, minutes; - days = (time_sec) / (60*60*24); - sec_left = (time_sec) % (60*60*24); - hours = (sec_left) / (60*60) ; - sec_left = (sec_left) %(60*60); - minutes = (sec_left) /60; - sec_left = (sec_left) % (60); - sprintf(ascdiff,"%ld day(s) %ld hour(s) %ld minute(s) %ld second(s)",days, hours, minutes, sec_left); - return ascdiff; -} /*************** powell ************************/ +/* +Minimization of a function func of n variables. Input consists of an initial starting point +p[1..n] ; an initial matrix xi[1..n][1..n] , whose columns contain the initial set of di- +rections (usually the n unit vectors); and ftol , the fractional tolerance in the function value +such that failure to decrease by more than this amount on one iteration signals doneness. On +output, p is set to the best point found, xi is the then-current direction set, fret is the returned +function value at p , and iter is the number of iterations taken. The routine linmin is used. + */ void powell(double p[], double **xi, int n, double ftol, int *iter, double *fret, double (*func)(double [])) { @@ -1319,17 +1431,15 @@ void powell(double p[], double **xi, int if(*iter <=3){ tml = *localtime(&rcurr_time); strcpy(strcurr,asctime(&tml)); -/* asctime_r(&tm,strcurr); */ rforecast_time=rcurr_time; itmp = strlen(strcurr); if(strcurr[itmp-1]=='\n') /* Windows outputs with a new line */ strcurr[itmp-1]='\0'; - printf("\nConsidering the time needed for this last iteration #%d: %ld seconds,\n",*iter,rcurr_time-rlast_time); + printf("\nConsidering the time needed for the last iteration #%d: %ld seconds,\n",*iter,rcurr_time-rlast_time); fprintf(ficlog,"\nConsidering the time needed for this last iteration #%d: %ld seconds,\n",*iter,rcurr_time-rlast_time); for(niterf=10;niterf<=30;niterf+=10){ rforecast_time=rcurr_time+(niterf-*iter)*(rcurr_time-rlast_time); forecast_time = *localtime(&rforecast_time); -/* asctime_r(&tmf,strfor); */ strcpy(strfor,asctime(&forecast_time)); itmp = strlen(strfor); if(strfor[itmp-1]=='\n') @@ -1342,8 +1452,8 @@ void powell(double p[], double **xi, int for (j=1;j<=n;j++) xit[j]=xi[j][i]; fptt=(*fret); #ifdef DEBUG - printf("fret=%lf \n",*fret); - fprintf(ficlog,"fret=%lf \n",*fret); + printf("fret=%lf, %lf, %lf \n", *fret, *fret, *fret); + fprintf(ficlog, "fret=%lf, %lf, %lf \n", *fret, *fret, *fret); #endif printf("%d",i);fflush(stdout); fprintf(ficlog,"%d",i);fflush(ficlog); @@ -1361,13 +1471,13 @@ void powell(double p[], double **xi, int fprintf(ficlog," x(%d)=%.12e",j,xit[j]); } for(j=1;j<=n;j++) { - printf(" p=%.12e",p[j]); - fprintf(ficlog," p=%.12e",p[j]); + printf(" p(%d)=%.12e",j,p[j]); + fprintf(ficlog," p(%d)=%.12e",j,p[j]); } printf("\n"); fprintf(ficlog,"\n"); #endif - } + } /* end i */ if (2.0*fabs(fp-(*fret)) <= ftol*(fabs(fp)+fabs(*fret))) { #ifdef DEBUG int k[2],l; @@ -1400,20 +1510,45 @@ void powell(double p[], double **xi, int return; } if (*iter == ITMAX) nrerror("powell exceeding maximum iterations."); - for (j=1;j<=n;j++) { + for (j=1;j<=n;j++) { /* Computes an extrapolated point */ ptt[j]=2.0*p[j]-pt[j]; xit[j]=p[j]-pt[j]; pt[j]=p[j]; } fptt=(*func)(ptt); - if (fptt < fp) { - t=2.0*(fp-2.0*(*fret)+fptt)*SQR(fp-(*fret)-del)-del*SQR(fp-fptt); - if (t < 0.0) { - linmin(p,xit,n,fret,func); + if (fptt < fp) { /* If extrapolated point is better, decide if we keep that new direction or not */ + /* (x1 f1=fp), (x2 f2=*fret), (x3 f3=fptt), (xm fm) */ + /* From x1 (P0) distance of x2 is at h and x3 is 2h */ + /* Let f"(x2) be the 2nd derivative equal everywhere. */ + /* Then the parabolic through (x1,f1), (x2,f2) and (x3,f3) */ + /* will reach at f3 = fm + h^2/2 f"m ; f" = (f1 -2f2 +f3 ) / h**2 */ + /* f1-f3 = delta(2h) = 2 h**2 f'' = 2(f1- 2f2 +f3) */ + /* Thus we compare delta(2h) with observed f1-f3 */ + /* or best gain on one ancient line 'del' with total */ + /* gain f1-f2 = f1 - f2 - 'del' with del */ + /* t=2.0*(fp-2.0*(*fret)+fptt)*SQR(fp-(*fret)-del)-del*SQR(fp-fptt); */ + + t=2.0*(fp-2.0*(*fret)+fptt)*SQR(fp-(*fret)-del); + t= t- del*SQR(fp-fptt); + printf("t1= %.12lf, t2= %.12lf, t=%.12lf\n", 2.0*(fp-2.0*(*fret)+fptt)*SQR(fp-(*fret)-del),del*SQR(fp-fptt),t); + fprintf(ficlog,"t1= %.12lf, t2= %.12lf, t=%.12lf\n", 2.0*(fp-2.0*(*fret)+fptt)*SQR(fp-(*fret)-del),del*SQR(fp-fptt),t); +#ifdef DEBUG + printf("t3= %.12lf, t4= %.12lf, t3*= %.12lf, t4*= %.12lf\n",SQR(fp-(*fret)-del),SQR(fp-fptt), + (fp-(*fret)-del)*(fp-(*fret)-del),(fp-fptt)*(fp-fptt)); + fprintf(ficlog,"t3= %.12lf, t4= %.12lf, t3*= %.12lf, t4*= %.12lf\n",SQR(fp-(*fret)-del),SQR(fp-fptt), + (fp-(*fret)-del)*(fp-(*fret)-del),(fp-fptt)*(fp-fptt)); + printf("tt= %.12lf, t=%.12lf\n",2.0*(fp-2.0*(*fret)+fptt)*(fp-(*fret)-del)*(fp-(*fret)-del)-del*(fp-fptt)*(fp-fptt),t); + fprintf(ficlog, "tt= %.12lf, t=%.12lf\n",2.0*(fp-2.0*(*fret)+fptt)*(fp-(*fret)-del)*(fp-(*fret)-del)-del*(fp-fptt)*(fp-fptt),t); +#endif + if (t < 0.0) { /* Then we use it for last direction */ + linmin(p,xit,n,fret,func); /* computes mean on the extrapolated direction.*/ for (j=1;j<=n;j++) { - xi[j][ibig]=xi[j][n]; - xi[j][n]=xit[j]; + xi[j][ibig]=xi[j][n]; /* Replace the direction with biggest decrease by n */ + xi[j][n]=xit[j]; /* and nth direction by the extrapolated */ } + printf("Gaining to use average direction of P0 P%d instead of biggest increase direction %d :\n",n,ibig); + fprintf(ficlog,"Gaining to use average direction of P0 P%d instead of biggest increase direction %d :\n",n,ibig); + #ifdef DEBUG printf("Direction changed last moved %d in place of ibig=%d, new last is the average:\n",n,ibig); fprintf(ficlog,"Direction changed last moved %d in place of ibig=%d, new last is the average:\n",n,ibig); @@ -1424,8 +1559,8 @@ void powell(double p[], double **xi, int printf("\n"); fprintf(ficlog,"\n"); #endif - } - } + } /* end of t negative */ + } /* end if (fptt < fp) */ } } @@ -1435,22 +1570,22 @@ double **prevalim(double **prlim, int nl { /* Computes the prevalence limit in each live state at age x by left multiplying the unit matrix by transitions matrix until convergence is reached */ - + int i, ii,j,k; double min, max, maxmin, maxmax,sumnew=0.; /* double **matprod2(); */ /* test */ double **out, cov[NCOVMAX+1], **pmij(); double **newm; double agefin, delaymax=50 ; /* Max number of years to converge */ - + for (ii=1;ii<=nlstate+ndeath;ii++) for (j=1;j<=nlstate+ndeath;j++){ oldm[ii][j]=(ii==j ? 1.0 : 0.0); } - - cov[1]=1.; - - /* Even if hstepm = 1, at least one multiplication by the unit matrix */ + + cov[1]=1.; + + /* Even if hstepm = 1, at least one multiplication by the unit matrix */ for(agefin=age-stepm/YEARM; agefin>=age-delaymax; agefin=agefin-stepm/YEARM){ newm=savm; /* Covariates have to be included here again */ @@ -1487,11 +1622,12 @@ double **prevalim(double **prlim, int nl } maxmin=max-min; maxmax=FMAX(maxmax,maxmin); - } + } /* j loop */ if(maxmax < ftolpl){ return prlim; } - } + } /* age loop */ + return prlim; /* should not reach here */ } /*************** transition probabilities ***************/ @@ -1513,7 +1649,7 @@ double **pmij(double **ps, double *cov, */ double s1, lnpijopii; /*double t34;*/ - int i,j,j1, nc, ii, jj; + int i,j, nc, ii, jj; for(i=1; i<= nlstate; i++){ for(j=1; jfunction)(xt); /* p xt[1]@8 is fine */ + /* fret=(*func)(xt); /\* p xt[1]@8 is fine *\/ */ + printf("Function = %.12lf ",fret); + for (j=1;j<=n;j++) printf(" %d %.8lf", j, xt[j]); + printf("\n"); + free_vector(xt,1,n); + return fret; +} +#endif /*************** log-likelihood *************/ double func( double *x) @@ -1673,6 +1828,9 @@ double func( double *x) /*for(i=1;ifunction = func; + printf(" Func %.12lf \n",myfunc(npar,p1,NULL,d)); + nlopt_set_min_objective(opt, myfunc, d); + nlopt_set_xtol_rel(opt, ftol); + if ((creturn=nlopt_optimize(opt, p1, &minf)) < 0) { + printf("nlopt failed! %d\n",creturn); + } + else { + printf("found minimum after %d evaluations (NLOPT=%d)\n", countcallfunc ,NLOPT); + printf("found minimum at f(%g,%g) = %0.10g\n", p[0], p[1], minf); + iter=1; /* not equal */ + } + nlopt_destroy(opt); +#endif free_matrix(xi,1,npar,1,npar); fclose(ficrespow); - printf("\n#Number of iterations = %d, -2 Log likelihood = %.12f\n",iter,func(p)); - fprintf(ficlog,"\n#Number of iterations = %d, -2 Log likelihood = %.12f \n",iter,func(p)); - fprintf(ficres,"#Number of iterations = %d, -2 Log likelihood = %.12f \n",iter,func(p)); + printf("\n#Number of iterations & function calls = %d & %d, -2 Log likelihood = %.12f\n",iter, countcallfunc,func(p)); + fprintf(ficlog,"\n#Number of iterations & function calls = %d & %d, -2 Log likelihood = %.12f\n",iter, countcallfunc,func(p)); + fprintf(ficres,"\n#Number of iterations & function calls = %d & %d, -2 Log likelihood = %.12f\n",iter, countcallfunc,func(p)); } @@ -2091,7 +2288,7 @@ void hesscov(double **matcov, double p[] { double **a,**y,*x,pd; double **hess; - int i, j,jk; + int i, j; int *indx; double hessii(double p[], double delta, int theta, double delti[],double (*func)(double []),int npar); @@ -2225,7 +2422,7 @@ double hessii(double x[], double delta, k=kmax; } else if((k1 >khi/nkhif) || (k2 >khi/nkhif)){ /* Keeps lastvalue before 3.84/2 KHI2 5% 1d.f. */ - k=kmax; l=lmax*10.; + k=kmax; l=lmax*10; } else if((k1 >khi/nkhi) || (k2 >khi/nkhi)){ delts=delt; @@ -2240,7 +2437,7 @@ double hessii(double x[], double delta, double hessij( double x[], double delti[], int thetai,int thetaj,double (*func)(double []),int npar) { int i; - int l=1, l1, lmax=20; + int l=1, lmax=20; double k1,k2,k3,k4,res,fx; double p2[MAXPARM+1]; int k; @@ -2355,7 +2552,7 @@ void pstamp(FILE *fichier) void freqsummary(char fileres[], int iagemin, int iagemax, int **s, double **agev, int nlstate, int imx, int *Tvaraff, int **nbcode, int *ncodemax,double **mint,double **anint, char strstart[]) { /* Some frequencies */ - int i, m, jk, k1,i1, j1, bool, z1,j; + int i, m, jk, j1, bool, z1,j; int first; double ***freq; /* Frequencies */ double *pp, **prop; @@ -2379,10 +2576,9 @@ void freqsummary(char fileres[], int ia first=1; - /* for(k1=1; k1<=j ; k1++){ /* Loop on covariates */ - /* for(i1=1; i1<=ncodemax[k1];i1++){ /* Now it is 2 */ - /* j1++; -*/ + /* for(k1=1; k1<=j ; k1++){ */ /* Loop on covariates */ + /* for(i1=1; i1<=ncodemax[k1];i1++){ */ /* Now it is 2 */ + /* j1++; */ for (j1 = 1; j1 <= (int) pow(2,cptcoveff); j1++){ /*printf("cptcoveff=%d Tvaraff=%d", cptcoveff,Tvaraff[1]); scanf("%d", i);*/ @@ -2536,10 +2732,10 @@ void prevalence(double ***probs, double We still use firstpass and lastpass as another selection. */ - int i, m, jk, k1, i1, j1, bool, z1,j; - double ***freq; /* Frequencies */ - double *pp, **prop; - double pos,posprop; + int i, m, jk, j1, bool, z1,j; + + double **prop; + double posprop; double y2; /* in fractional years */ int iagemin, iagemax; int first; /** to stop verbosity which is redirected to log file */ @@ -2630,7 +2826,7 @@ void concatwav(int wav[], int **dh, int int j, k=0,jk, ju, jl; double sum=0.; first=0; - jmin=1e+5; + jmin=100000; jmax=-1; jmean=0.; for(i=1; i<=imx; i++){ @@ -2759,9 +2955,9 @@ void tricode(int *Tvar, int **nbcode, in { /**< Uses cptcovn+2*cptcovprod as the number of covariates */ /* Tvar[i]=atoi(stre); find 'n' in Vn and stores in Tvar. If model=V2+V1 Tvar[1]=2 and Tvar[2]=1 - /* Boring subroutine which should only output nbcode[Tvar[j]][k] + * Boring subroutine which should only output nbcode[Tvar[j]][k] * Tvar[5] in V2+V1+V3*age+V2*V4 is 2 (V2) - /* nbcode[Tvar[j]][1]= + * nbcode[Tvar[j]][1]= */ int ij=1, k=0, j=0, i=0, maxncov=NCOVMAX; @@ -2870,7 +3066,7 @@ void evsij(double ***eij, double x[], in { /* Health expectancies, no variances */ - int i, j, nhstepm, hstepm, h, nstepm, k, cptj, cptj2, i2, j2; + int i, j, nhstepm, hstepm, h, nstepm; int nhstepma, nstepma; /* Decreasing with age */ double age, agelim, hf; double ***p3mat; @@ -3189,10 +3385,13 @@ void varevsij(char optionfilefiname[], d /* Variance of health expectancies */ /* double **prevalim(double **prlim, int nlstate, double *xp, double age, double **oldm, double ** savm,double ftolpl);*/ /* double **newm;*/ + /* int movingaverage(double ***probs, double bage,double fage, double ***mobaverage, int mobilav)*/ + + int movingaverage(); double **dnewm,**doldm; double **dnewmp,**doldmp; int i, j, nhstepm, hstepm, h, nstepm ; - int k, cptcode; + int k; double *xp; double **gp, **gm; /* for var eij */ double ***gradg, ***trgradg; /*for var eij */ @@ -3466,7 +3665,7 @@ void varevsij(char optionfilefiname[], d /* fprintf(ficgp,"\n replot \"%s\" u 1:(($3+1.96*$4)*%6.3f) t \"95\%% interval\" w l 2 ",fileresprobmorprev,YEARM/estepm); */ /* fprintf(ficgp,"\n replot \"%s\" u 1:(($3-1.96*$4)*%6.3f) not w l 2 ",fileresprobmorprev,YEARM/estepm); */ fprintf(ficgp,"\n plot \"%s\" u 1:($3) not w l lt 1 ",subdirf(fileresprobmorprev)); - fprintf(ficgp,"\n replot \"%s\" u 1:(($3+1.96*$4)) t \"95\%% interval\" w l lt 2 ",subdirf(fileresprobmorprev)); + fprintf(ficgp,"\n replot \"%s\" u 1:(($3+1.96*$4)) t \"95%% interval\" w l lt 2 ",subdirf(fileresprobmorprev)); fprintf(ficgp,"\n replot \"%s\" u 1:(($3-1.96*$4)) not w l lt 2 ",subdirf(fileresprobmorprev)); fprintf(fichtm,"\n
File (multiple files are possible if covariates are present): %s\n",subdirf(fileresprobmorprev),subdirf(fileresprobmorprev)); fprintf(fichtm,"\n
Probability is computed over estepm=%d months.

\n", estepm,subdirf3(optionfilefiname,"varmuptjgr",digitp),digit); @@ -3492,10 +3691,9 @@ void varprevlim(char fileres[], double * { /* Variance of prevalence limit */ /* double **prevalim(double **prlim, int nlstate, double *xp, double age, double **oldm, double **savm,double ftolpl);*/ - double **newm; + double **dnewm,**doldm; int i, j, nhstepm, hstepm; - int k, cptcode; double *xp; double *gp, *gm; double **gradg, **trgradg; @@ -3574,9 +3772,9 @@ void varprevlim(char fileres[], double * /************ Variance of one-step probabilities ******************/ void varprob(char optionfilefiname[], double **matcov, double x[], double delti[], int nlstate, double bage, double fage, int ij, int *Tvar, int **nbcode, int *ncodemax, char strstart[]) { - int i, j=0, i1, k1, l1, t, tj; + int i, j=0, k1, l1, tj; int k2, l2, j1, z1; - int k=0,l, cptcode; + int k=0, l; int first=1, first1, first2; double cv12, mu1, mu2, lc1, lc2, v12, v21, v11, v22,v1,v2, c12, tnalp; double **dnewm,**doldm; @@ -3584,7 +3782,7 @@ void varprob(char optionfilefiname[], do double *gp, *gm; double **gradg, **trgradg; double **mu; - double age,agelim, cov[NCOVMAX+1]; + double age, cov[NCOVMAX+1]; double std=2.0; /* Number of standard deviation wide of confidence ellipsoids */ int theta; char fileresprob[FILENAMELENGTH]; @@ -3888,7 +4086,7 @@ To be simple, these graphs help to under } /* k12 */ } /*l1 */ }/* k1 */ - /* } /* loop covariates */ + /* } */ /* loop covariates */ } free_ma3x(varpij,1,nlstate,1,nlstate+ndeath,(int) bage, (int)fage); free_matrix(mu,1,(nlstate+ndeath)*(nlstate+ndeath),(int) bage, (int)fage); @@ -3956,8 +4154,8 @@ fprintf(fichtm," \n
  • Graphs ",stepm,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1); /* Period (stable) prevalence in each health state */ for(cpt=1; cpt<=nlstate;cpt++){ - fprintf(fichtm,"
    - Convergence from each state (1 to %d) to period (stable) prevalence in state %d %s%d_%d.png
    \ -",nlstate, cpt, subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1); + fprintf(fichtm,"
    - Convergence to period (stable) prevalence in state %d. Or probability to be in state %d being in state (1 to %d) at different ages. %s%d_%d.png
    \ +", cpt, cpt, nlstate, subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1); } for(cpt=1; cpt<=nlstate;cpt++) { fprintf(fichtm,"\n
    - Life expectancy by health state (%d) at initial age and its decomposition into health expectancies in each alive state (1 to %d) : %s%d%d.png
    \ @@ -4042,7 +4240,7 @@ true period expectancies (those weighted void printinggnuplot(char fileres[], char optionfilefiname[], double ageminpar, double agemaxpar, double fage , char pathc[], double p[]){ char dirfileres[132],optfileres[132]; - int m0,cpt=0,k1=0,i=0,k=0,j=0,jk=0,k2=0,k3=0,ij=0,l=0; + int cpt=0,k1=0,i=0,k=0,j=0,jk=0,k2=0,k3=0,ij=0,l=0; int ng=0; /* if((ficgp=fopen(optionfilegnuplot,"a"))==NULL) { */ /* printf("Problem with file %s",optionfilegnuplot); */ @@ -4065,21 +4263,21 @@ void printinggnuplot(char fileres[], cha fprintf(ficgp,"set xlabel \"Age\" \n\ set ylabel \"Probability\" \n\ set ter png small size 320, 240\n\ -plot [%.f:%.f] \"%s\" every :::%d::%d u 1:2 \"\%%lf",ageminpar,fage,subdirf2(fileres,"vpl"),k1-1,k1-1); +plot [%.f:%.f] \"%s\" every :::%d::%d u 1:2 \"%%lf",ageminpar,fage,subdirf2(fileres,"vpl"),k1-1,k1-1); for (i=1; i<= nlstate ; i ++) { - if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); - else fprintf(ficgp," \%%*lf (\%%*lf)"); + if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); + else fprintf(ficgp," %%*lf (%%*lf)"); } - fprintf(ficgp,"\" t\"Period (stable) prevalence\" w l lt 0,\"%s\" every :::%d::%d u 1:($2+1.96*$3) \"\%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1); + fprintf(ficgp,"\" t\"Period (stable) prevalence\" w l lt 0,\"%s\" every :::%d::%d u 1:($2+1.96*$3) \"%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1); for (i=1; i<= nlstate ; i ++) { - if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); - else fprintf(ficgp," \%%*lf (\%%*lf)"); + if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); + else fprintf(ficgp," %%*lf (%%*lf)"); } - fprintf(ficgp,"\" t\"95\%% CI\" w l lt 1,\"%s\" every :::%d::%d u 1:($2-1.96*$3) \"\%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1); + fprintf(ficgp,"\" t\"95%% CI\" w l lt 1,\"%s\" every :::%d::%d u 1:($2-1.96*$3) \"%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1); for (i=1; i<= nlstate ; i ++) { - if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); - else fprintf(ficgp," \%%*lf (\%%*lf)"); + if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); + else fprintf(ficgp," %%*lf (%%*lf)"); } fprintf(ficgp,"\" t\"\" w l lt 1,\"%s\" every :::%d::%d u 1:($%d) t\"Observed prevalence \" w l lt 2",subdirf2(fileres,"p"),k1-1,k1-1,2+4*(cpt-1)); } @@ -4092,23 +4290,23 @@ plot [%.f:%.f] \"%s\" every :::%d::%d u for (i=1; i<= nlstate+1 ; i ++) { k=2*i; - fprintf(ficgp,"\"%s\" every :::%d::%d u 1:2 \"\%%lf",subdirf2(fileres,"t"),k1-1,k1-1); + fprintf(ficgp,"\"%s\" every :::%d::%d u 1:2 \"%%lf",subdirf2(fileres,"t"),k1-1,k1-1); for (j=1; j<= nlstate+1 ; j ++) { - if (j==i) fprintf(ficgp," \%%lf (\%%lf)"); - else fprintf(ficgp," \%%*lf (\%%*lf)"); + if (j==i) fprintf(ficgp," %%lf (%%lf)"); + else fprintf(ficgp," %%*lf (%%*lf)"); } if (i== 1) fprintf(ficgp,"\" t\"TLE\" w l ,"); else fprintf(ficgp,"\" t\"LE in state (%d)\" w l ,",i-1); - fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2-$3*2) \"\%%lf",subdirf2(fileres,"t"),k1-1,k1-1); + fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2-$3*2) \"%%lf",subdirf2(fileres,"t"),k1-1,k1-1); for (j=1; j<= nlstate+1 ; j ++) { - if (j==i) fprintf(ficgp," \%%lf (\%%lf)"); - else fprintf(ficgp," \%%*lf (\%%*lf)"); + if (j==i) fprintf(ficgp," %%lf (%%lf)"); + else fprintf(ficgp," %%*lf (%%*lf)"); } fprintf(ficgp,"\" t\"\" w l lt 0,"); - fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2+$3*2) \"\%%lf",subdirf2(fileres,"t"),k1-1,k1-1); + fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2+$3*2) \"%%lf",subdirf2(fileres,"t"),k1-1,k1-1); for (j=1; j<= nlstate+1 ; j ++) { - if (j==i) fprintf(ficgp," \%%lf (\%%lf)"); - else fprintf(ficgp," \%%*lf (\%%*lf)"); + if (j==i) fprintf(ficgp," %%lf (%%lf)"); + else fprintf(ficgp," %%*lf (%%*lf)"); } if (i== (nlstate+1)) fprintf(ficgp,"\" t\"\" w l lt 0"); else fprintf(ficgp,"\" t\"\" w l lt 0,"); @@ -4228,7 +4426,7 @@ plot [%.f:%.f] ", ageminpar, agemaxpar) } /* end k2 */ } /* end jk */ } /* end ng */ - avoid: + /* avoid: */ fflush(ficgp); } /* end gnuplot */ @@ -4276,14 +4474,13 @@ int movingaverage(double ***probs, doubl /************** Forecasting ******************/ -prevforecast(char fileres[], double anproj1, double mproj1, double jproj1, double ageminpar, double agemax, double dateprev1, double dateprev2, int mobilav, double bage, double fage, int firstpass, int lastpass, double anproj2, double p[], int cptcoveff){ +void prevforecast(char fileres[], double anproj1, double mproj1, double jproj1, double ageminpar, double agemax, double dateprev1, double dateprev2, int mobilav, double bage, double fage, int firstpass, int lastpass, double anproj2, double p[], int cptcoveff){ /* proj1, year, month, day of starting projection agemin, agemax range of age dateprev1 dateprev2 range of dates during which prevalence is computed anproj2 year of en of projection (same day and month as proj1). */ - int yearp, stepsize, hstepm, nhstepm, j, k, c, cptcod, i, h, i1; - int *popage; + int yearp, stepsize, hstepm, nhstepm, j, k, cptcod, i, h, i1; double agec; /* generic age */ double agelim, ppij, yp,yp1,yp2,jprojmean,mprojmean,anprojmean; double *popeffectif,*popcount; @@ -4400,7 +4597,7 @@ prevforecast(char fileres[], double anpr } /************** Forecasting *****not tested NB*************/ -populforecast(char fileres[], double anpyram,double mpyram,double jpyram,double ageminpar, double agemax,double dateprev1, double dateprev2, int mobilav, double agedeb, double fage, int popforecast, char popfile[], double anpyram1,double p[], int i2){ +void populforecast(char fileres[], double anpyram,double mpyram,double jpyram,double ageminpar, double agemax,double dateprev1, double dateprev2, int mobilav, double agedeb, double fage, int popforecast, char popfile[], double anpyram1,double p[], int i2){ int cpt, stepsize, hstepm, nhstepm, j,k,c, cptcod, i,h; int *popage; @@ -4577,8 +4774,8 @@ void prwizard(int ncovmodel, int nlstate /* Wizard to print covariance matrix template */ - char ca[32], cb[32], cc[32]; - int i,j, k, l, li, lj, lk, ll, jj, npar, itimes; + char ca[32], cb[32]; + int i,j, k, li, lj, lk, ll, jj, npar, itimes; int numlinepar; printf("# Parameters nlstate*nlstate*ncov a12*1 + b12 * age + ...\n"); @@ -4799,7 +4996,7 @@ fprintf(fichtm,"

    • Life table=1;j--){ @@ -4878,9 +5073,9 @@ int readdata(char datafile[], int firsto strcpy(line,stra); cutv(stra, strb,line,' '); - if(iout=sscanf(strb,"%d/%d",&month, &year) != 0){ + if( (iout=sscanf(strb,"%d/%d",&month, &year)) != 0){ } - else if(iout=sscanf(strb,"%s.",dummy) != 0){ + else if( (iout=sscanf(strb,"%s.",dummy)) != 0){ month=99; year=9999; }else{ @@ -4894,9 +5089,9 @@ int readdata(char datafile[], int firsto } /* ENd Waves */ cutv(stra, strb,line,' '); - if(iout=sscanf(strb,"%d/%d",&month, &year) != 0){ + if( (iout=sscanf(strb,"%d/%d",&month, &year)) != 0){ } - else if(iout=sscanf(strb,"%s.",dummy) != 0){ + else if( (iout=sscanf(strb,"%s.",dummy)) != 0){ month=99; year=9999; }else{ @@ -4909,9 +5104,9 @@ int readdata(char datafile[], int firsto strcpy(line,stra); cutv(stra, strb,line,' '); - if(iout=sscanf(strb,"%d/%d",&month, &year) != 0){ + if( (iout=sscanf(strb,"%d/%d",&month, &year)) != 0){ } - else if(iout=sscanf(strb,"%s.", dummy) != 0){ + else if( (iout=sscanf(strb,"%s.", dummy)) != 0){ month=99; year=9999; }else{ @@ -4996,7 +5191,7 @@ int readdata(char datafile[], int firsto fclose(fic); return (0); - endread: + /* endread: */ printf("Exiting readdata: "); fclose(fic); return (1); @@ -5009,7 +5204,7 @@ void removespace(char *str) { do while (*p2 == ' ') p2++; - while (*p1++ = *p2++); + while (*p1++ == *p2++); } int decodemodel ( char model[], int lastobs) /**< This routine decode the model and returns: @@ -5027,7 +5222,7 @@ int decodemodel ( char model[], int last */ { int i, j, k, ks; - int i1, j1, k1, k2; + int j1, k1, k2; char modelsav[80]; char stra[80], strb[80], strc[80], strd[80],stre[80]; @@ -5039,7 +5234,7 @@ int decodemodel ( char model[], int last cptcovs=j+1-j1; /**< Number of simple covariates V1+V2*age+V3 +V3*V4=> V1 + V3 =2 */ cptcovt= j+1; /* Number of total covariates in the model V1 + V2*age+ V3 + V3*V4=> 4*/ /* including age products which are counted in cptcovage. - /* but the covariates which are products must be treated separately: ncovn=4- 2=2 (V1+V3). */ + * but the covariates which are products must be treated separately: ncovn=4- 2=2 (V1+V3). */ cptcovprod=j1; /**< Number of products V1*V2 +v3*age = 2 */ cptcovprodnoage=0; /**< Number of covariate products without age: V3*V4 =1 */ strcpy(modelsav,model); @@ -5176,12 +5371,12 @@ int decodemodel ( char model[], int last return (0); /* with covar[new additional covariate if product] and Tage if age */ - endread: + /*endread:*/ printf("Exiting decodemodel: "); return (1); } -calandcheckages(int imx, int maxwav, double *agemin, double *agemax, int *nberr, int *nbwarn ) +int calandcheckages(int imx, int maxwav, double *agemin, double *agemax, int *nberr, int *nbwarn ) { int i, m; @@ -5192,13 +5387,13 @@ calandcheckages(int imx, int maxwav, dou s[m][i]=-1; } if((int)moisdc[i]==99 && (int)andc[i]==9999 && s[m][i]>nlstate){ - *nberr++; - printf("Error! Date of death (month %2d and year %4d) of individual %ld on line %d was unknown, you must set an arbitrary year of death or he/she is skipped and results are biased\n",(int)moisdc[i],(int)andc[i],num[i],i); - fprintf(ficlog,"Error! Date of death (month %2d and year %4d) of individual %ld on line %d was unknown, you must set an arbitrary year of death or he/she is skipped and results are biased\n",(int)moisdc[i],(int)andc[i],num[i],i); + *nberr = *nberr + 1; + printf("Error! Date of death (month %2d and year %4d) of individual %ld on line %d was unknown, you must set an arbitrary year of death or he/she is skipped and results are biased (%d)\n",(int)moisdc[i],(int)andc[i],num[i],i, *nberr); + fprintf(ficlog,"Error! Date of death (month %2d and year %4d) of individual %ld on line %d was unknown, you must set an arbitrary year of death or he/she is skipped and results are biased (%d)\n",(int)moisdc[i],(int)andc[i],num[i],i, *nberr); s[m][i]=-1; } if((int)moisdc[i]==99 && (int)andc[i]!=9999 && s[m][i]>nlstate){ - *nberr++; + (*nberr)++; printf("Error! Month of death of individual %ld on line %d was unknown %2d, you should set it otherwise the information on the death is skipped and results are biased.\n",num[i],i,(int)moisdc[i]); fprintf(ficlog,"Error! Month of death of individual %ld on line %d was unknown %f, you should set it otherwise the information on the death is skipped and results are biased.\n",num[i],i,moisdc[i]); s[m][i]=-1; /* We prefer to skip it (and to skip it in version 0.8a1 too */ @@ -5211,11 +5406,11 @@ calandcheckages(int imx, int maxwav, dou for(m=firstpass; (m<= lastpass); m++){ if(s[m][i] >0 || s[m][i]==-2 || s[m][i]==-4 || s[m][i]==-5){ if (s[m][i] >= nlstate+1) { - if(agedc[i]>0) - if((int)moisdc[i]!=99 && (int)andc[i]!=9999) + if(agedc[i]>0){ + if((int)moisdc[i]!=99 && (int)andc[i]!=9999){ agev[m][i]=agedc[i]; /*if(moisdc[i]==99 && andc[i]==9999) s[m][i]=-1;*/ - else { + }else { if ((int)andc[i]!=9999){ nbwarn++; printf("Warning negative age at death: %ld line:%d\n",num[i],i); @@ -5223,6 +5418,7 @@ calandcheckages(int imx, int maxwav, dou agev[m][i]=-1; } } + } /* agedc > 0 */ } else if(s[m][i] !=9){ /* Standard case, age in fractional years but with the precision of a month */ @@ -5253,7 +5449,7 @@ calandcheckages(int imx, int maxwav, dou for (i=1; i<=imx; i++) { for(m=firstpass; (m<=lastpass); m++){ if (s[m][i] > (nlstate+ndeath)) { - *nberr++; + (*nberr)++; printf("Error: on wave %d of individual %d status %d > (nlstate+ndeath)=(%d+%d)=%d\n",m,i,s[m][i],nlstate, ndeath, nlstate+ndeath); fprintf(ficlog,"Error: on wave %d of individual %d status %d > (nlstate+ndeath)=(%d+%d)=%d\n",m,i,s[m][i],nlstate, ndeath, nlstate+ndeath); return 1; @@ -5273,11 +5469,171 @@ calandcheckages(int imx, int maxwav, dou fprintf(ficlog,"Total number of individuals= %d, Agemin = %.2f, Agemax= %.2f\n\n", imx, *agemin, *agemax); return (0); - endread: + /* endread:*/ printf("Exiting calandcheckages: "); return (1); } +#if defined(_MSC_VER) +/*printf("Visual C++ compiler: %s \n;", _MSC_FULL_VER);*/ +/*fprintf(ficlog, "Visual C++ compiler: %s \n;", _MSC_FULL_VER);*/ +//#include "stdafx.h" +//#include +//#include +//#include +//#include +typedef BOOL(WINAPI *LPFN_ISWOW64PROCESS) (HANDLE, PBOOL); + +LPFN_ISWOW64PROCESS fnIsWow64Process; + +BOOL IsWow64() +{ + BOOL bIsWow64 = FALSE; + + //typedef BOOL (APIENTRY *LPFN_ISWOW64PROCESS) + // (HANDLE, PBOOL); + + //LPFN_ISWOW64PROCESS fnIsWow64Process; + + HMODULE module = GetModuleHandle(_T("kernel32")); + const char funcName[] = "IsWow64Process"; + fnIsWow64Process = (LPFN_ISWOW64PROCESS) + GetProcAddress(module, funcName); + + if (NULL != fnIsWow64Process) + { + if (!fnIsWow64Process(GetCurrentProcess(), + &bIsWow64)) + //throw std::exception("Unknown error"); + printf("Unknown error\n"); + } + return bIsWow64 != FALSE; +} +#endif + +void syscompilerinfo() + { + /* #include "syscompilerinfo.h"*/ + +#if defined __INTEL_COMPILER +#if defined(__GNUC__) + struct utsname sysInfo; /* For Intel on Linux and OS/X */ +#endif +#elif defined(__GNUC__) +#include /* Only on gnu */ + struct utsname sysInfo; + int cross = CROSS; + if (cross){ + printf("Cross-"); + fprintf(ficlog, "Cross-"); + } +#endif + +#include + + printf("Compiled with:");fprintf(ficlog,"Compiled with:"); +#if defined(__clang__) + printf(" Clang/LLVM");fprintf(ficlog," Clang/LLVM"); /* Clang/LLVM. ---------------------------------------------- */ +#endif +#if defined(__ICC) || defined(__INTEL_COMPILER) + printf(" Intel ICC/ICPC");fprintf(ficlog," Intel ICC/ICPC");/* Intel ICC/ICPC. ------------------------------------------ */ +#endif +#if defined(__GNUC__) || defined(__GNUG__) + printf(" GNU GCC/G++");fprintf(ficlog," GNU GCC/G++");/* GNU GCC/G++. --------------------------------------------- */ +#endif +#if defined(__HP_cc) || defined(__HP_aCC) + printf(" Hewlett-Packard C/aC++");fprintf(fcilog," Hewlett-Packard C/aC++"); /* Hewlett-Packard C/aC++. ---------------------------------- */ +#endif +#if defined(__IBMC__) || defined(__IBMCPP__) + printf(" IBM XL C/C++"); fprintf(ficlog," IBM XL C/C++");/* IBM XL C/C++. -------------------------------------------- */ +#endif +#if defined(_MSC_VER) + printf(" Microsoft Visual Studio");fprintf(ficlog," Microsoft Visual Studio");/* Microsoft Visual Studio. --------------------------------- */ +#endif +#if defined(__PGI) + printf(" Portland Group PGCC/PGCPP");fprintf(ficlog," Portland Group PGCC/PGCPP");/* Portland Group PGCC/PGCPP. ------------------------------- */ +#endif +#if defined(__SUNPRO_C) || defined(__SUNPRO_CC) + printf(" Oracle Solaris Studio");fprintf(ficlog," Oracle Solaris Studio\n");/* Oracle Solaris Studio. ----------------------------------- */ +#endif + printf(" for ");fprintf(ficlog," for "); + +// http://stackoverflow.com/questions/4605842/how-to-identify-platform-compiler-from-preprocessor-macros +#ifdef _WIN32 // note the underscore: without it, it's not msdn official! + // Windows (x64 and x86) + printf("Windows (x64 and x86) ");fprintf(ficlog,"Windows (x64 and x86) "); +#elif __unix__ // all unices, not all compilers + // Unix + printf("Unix ");fprintf(ficlog,"Unix "); +#elif __linux__ + // linux + printf("linux ");fprintf(ficlog,"linux "); +#elif __APPLE__ + // Mac OS, not sure if this is covered by __posix__ and/or __unix__ though.. + printf("Mac OS ");fprintf(ficlog,"Mac OS "); +#endif + +/* __MINGW32__ */ +/* __CYGWIN__ */ +/* __MINGW64__ */ +// http://msdn.microsoft.com/en-us/library/b0084kay.aspx +/* _MSC_VER //the Visual C++ compiler is 17.00.51106.1, the _MSC_VER macro evaluates to 1700. Type cl /? */ +/* _MSC_FULL_VER //the Visual C++ compiler is 15.00.20706.01, the _MSC_FULL_VER macro evaluates to 150020706 */ +/* _WIN64 // Defined for applications for Win64. */ +/* _M_X64 // Defined for compilations that target x64 processors. */ +/* _DEBUG // Defined when you compile with /LDd, /MDd, and /MTd. */ + +#if UINTPTR_MAX == 0xffffffff + printf(" 32-bit"); fprintf(ficlog," 32-bit");/* 32-bit */ +#elif UINTPTR_MAX == 0xffffffffffffffff + printf(" 64-bit"); fprintf(ficlog," 64-bit");/* 64-bit */ +#else + printf(" wtf-bit"); fprintf(ficlog," wtf-bit");/* wtf */ +#endif + +#if defined(__GNUC__) +# if defined(__GNUC_PATCHLEVEL__) +# define __GNUC_VERSION__ (__GNUC__ * 10000 \ + + __GNUC_MINOR__ * 100 \ + + __GNUC_PATCHLEVEL__) +# else +# define __GNUC_VERSION__ (__GNUC__ * 10000 \ + + __GNUC_MINOR__ * 100) +# endif + printf(" using GNU C version %d.\n", __GNUC_VERSION__); + fprintf(ficlog, " using GNU C version %d.\n", __GNUC_VERSION__); + + if (uname(&sysInfo) != -1) { + printf("Running on: %s %s %s %s %s\n",sysInfo.sysname, sysInfo.nodename, sysInfo.release, sysInfo.version, sysInfo.machine); + fprintf(ficlog,"Running on: %s %s %s %s %s\n ",sysInfo.sysname, sysInfo.nodename, sysInfo.release, sysInfo.version, sysInfo.machine); + } + else + perror("uname() error"); +#ifndef __INTEL_COMPILER + printf("GNU libc version: %s\n", gnu_get_libc_version()); + fprintf(ficlog,"GNU libc version: %s\n", gnu_get_libc_version()); +#endif +#endif + + // void main() + // { +#if defined(_MSC_VER) + if (IsWow64()){ + printf("The program (probably compiled for 32bit) is running under WOW64 (64bit) emulation.\n"); + fprintf(ficlog, "The program (probably compiled for 32bit) is running under WOW64 (64bit) emulation.\n"); + } + else{ + printf("The process is not running under WOW64 (i.e probably on a 64bit Windows).\n"); + fprintf(ficlog,"The programm is not running under WOW64 (i.e probably on a 64bit Windows).\n"); + } + // printf("\nPress Enter to continue..."); + // getchar(); + // } + +#endif + + + } /***********************************************/ /**************** Main Program *****************/ @@ -5293,38 +5649,35 @@ int main(int argc, char *argv[]) double ssval; #endif int movingaverage(double ***probs, double bage,double fage, double ***mobaverage, int mobilav); - int i,j, k, n=MAXN,iter,m,size=100,cptcode, cptcod; - int linei, month, year,iout; - int jj, ll, li, lj, lk, imk; + int i,j, k, n=MAXN,iter=0,m,size=100, cptcod; + + int jj, ll, li, lj, lk; int numlinepar=0; /* Current linenumber of parameter file */ int itimes; int NDIM=2; int vpopbased=0; - char ca[32], cb[32], cc[32]; + char ca[32], cb[32]; /* FILE *fichtm; *//* Html File */ /* FILE *ficgp;*/ /*Gnuplot File */ struct stat info; - double agedeb, agefin,hf; + double agedeb; double ageminpar=1.e20,agemin=1.e20, agemaxpar=-1.e20, agemax=-1.e20; double fret; - double **xi,tmp,delta; - double dum; /* Dummy variable */ double ***p3mat; double ***mobaverage; - int *indx; - char line[MAXLINE], linepar[MAXLINE]; + + char line[MAXLINE]; char path[MAXLINE],pathc[MAXLINE],pathcd[MAXLINE],pathtot[MAXLINE],model[MAXLINE]; char pathr[MAXLINE], pathimach[MAXLINE]; - char **bp, *tok, *val; /* pathtot */ + char *tok, *val; /* pathtot */ int firstobs=1, lastobs=10; - int sdeb, sfin; /* Status at beginning and end */ - int c, h , cpt,l; - int ju,jl, mi; - int i1,j1, jk,aa,bb, stepsize, ij; - int jnais,jdc,jint4,jint1,jint2,jint3,*tab; + int c, h , cpt; + int jl; + int i1, j1, jk, stepsize; + int *tab; int mobilavproj=0 , prevfcast=0 ; /* moving average of prev, If prevfcast=1 prevalence projection */ int mobilav=0,popforecast=0; int hstepm, nhstepm; @@ -5333,7 +5686,7 @@ int main(int argc, char *argv[]) double jprev1=1, mprev1=1,anprev1=2000,jprev2=1, mprev2=1,anprev2=2000; double jpyram=1, mpyram=1,anpyram=2000,jpyram1=1, mpyram1=1,anpyram1=2000; - double bage, fage, age, agelim, agebase; + double bage=0, fage=110, age, agelim, agebase; double ftolpl=FTOL; double **prlim; double ***param; /* Matrix of parameters */ @@ -5344,19 +5697,18 @@ int main(int argc, char *argv[]) double ***eij, ***vareij; double **varpl; /* Variances of prevalence limits by age */ double *epj, vepp; - double kk1, kk2; + double dateprev1, dateprev2,jproj1=1,mproj1=1,anproj1=2000,jproj2=1,mproj2=1,anproj2=2000; double **ximort; char *alph[]={"a","a","b","c","d","e"}, str[4]="1234"; int *dcwave; - char z[1]="c", occ; + char z[1]="c"; /*char *strt;*/ char strtend[80]; - long total_usecs; - + /* setlocale (LC_ALL, ""); */ /* bindtextdomain (PACKAGE, LOCALEDIR); */ /* textdomain (PACKAGE); */ @@ -5432,7 +5784,7 @@ int main(int argc, char *argv[]) strcpy(command,"mkdir "); strcat(command,optionfilefiname); if((outcmd=system(command)) != 0){ - printf("Problem creating directory or it already exists %s%s, err=%d\n",path,optionfilefiname,outcmd); + printf("Directory already exists (or can't create it) %s%s, err=%d\n",path,optionfilefiname,outcmd); /* fprintf(ficlog,"Problem creating directory %s%s\n",path,optionfilefiname); */ /* fclose(ficlog); */ /* exit(1); */ @@ -5459,6 +5811,8 @@ int main(int argc, char *argv[]) optionfilext=%s\n\ optionfilefiname='%s'\n",pathimach,pathtot,path,optionfile,optionfilext,optionfilefiname); + syscompilerinfo(); + printf("Local time (at start):%s",strstart); fprintf(ficlog,"Local time (at start): %s",strstart); fflush(ficlog); @@ -5627,7 +5981,7 @@ run imach with mle=-1 to get a correct t for(i=1; i <=nlstate; i++){ for(j=1; j <=nlstate+ndeath-1; j++){ fscanf(ficpar,"%1d%1d",&i1,&j1); - if ((i1-i)*(j1-j)!=0){ + if ( (i1-i) * (j1-j) != 0){ printf("Error in line parameters number %d, %1d%1d instead of %1d%1d \n",numlinepar, i,j, i1, j1); exit(1); } @@ -5996,7 +6350,7 @@ Interval (in months) between two waves: #ifdef GSL printf("GSL optimization\n"); fprintf(ficlog,"Powell\n"); -#elsedef +#else printf("Powell\n"); fprintf(ficlog,"Powell\n"); #endif strcpy(filerespow,"pow-mort"); @@ -6007,7 +6361,7 @@ Interval (in months) between two waves: } #ifdef GSL fprintf(ficrespow,"# GSL optimization\n# iter -2*LL"); -#elsedef +#else fprintf(ficrespow,"# Powell\n# iter -2*LL"); #endif /* for (i=1;i<=nlstate;i++) @@ -6569,7 +6923,8 @@ Interval (in months) between two waves: for(vpopbased=0; vpopbased <= popbased; vpopbased++){ /* Done for vpopbased=0 and vpopbased=1 if popbased==1*/ oldm=oldms;savm=savms; /* Segmentation fault */ - varevsij(optionfilefiname, vareij, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, prlim, ftolpl,k, estepm, cptcov,cptcod,vpopbased,mobilav, strstart); + cptcod= 0; /* To be deleted */ + varevsij(optionfilefiname, vareij, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, prlim, ftolpl,k, estepm, cptcov,cptcod,vpopbased,mobilav, strstart); /* cptcod not initialized Intel */ fprintf(ficrest,"# Total life expectancy with std error and decomposition into time to be expected in each health state\n# (weighted average of eij where weights are "); if(vpopbased==1) fprintf(ficrest,"the age specific prevalence observed (cross-sectionally) in the population i.e cross-sectionally\n in each health state (popbased=1) (mobilav=%d)\n",mobilav); @@ -6661,7 +7016,7 @@ Interval (in months) between two waves: if (mobilav!=0) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX); free_ma3x(probs,1,AGESUP,1,NCOVMAX, 1,NCOVMAX); } /* mle==-3 arrives here for freeing */ - endfree: + /* endfree:*/ free_matrix(prlim,1,nlstate,1,nlstate); /*here or after loop ? */ free_matrix(pmmij,1,nlstate+ndeath,1,nlstate+ndeath); free_matrix(oldms, 1,nlstate+ndeath,1,nlstate+ndeath);