--- imach/src/imach.c 2002/02/20 17:17:09 1.18 +++ imach/src/imach.c 2002/02/20 17:19:10 1.19 @@ -129,6 +129,7 @@ int m,nb; int *num, firstpass=0, lastpass=4,*cod, *ncodemax, *Tage; double **agev,*moisnais, *annais, *moisdc, *andc,**mint, **anint; double **pmmij, ***probs, ***mobaverage; +double dateintmean=0; double *weight; int **s; /* Status */ @@ -1150,18 +1151,18 @@ void lubksb(double **a, int n, int *indx } /************ Frequencies ********************/ -void freqsummary(char fileres[], int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax, int fprev1,int lprev1,double **mint,double **anint, int boolprev, double dateprev1,double dateprev2) +void freqsummary(char fileres[], int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax,double **mint,double **anint, double dateprev1,double dateprev2) { /* Some frequencies */ int i, m, jk, k1,i1, j1, bool, z1,z2,j; double ***freq; /* Frequencies */ double *pp; - double pos, k2; + double pos, k2, dateintsum=0,k2cpt=0; FILE *ficresp; char fileresp[FILENAMELENGTH]; pp=vector(1,nlstate); - probs= ma3x(1,130 ,1,8, 1,8); + probs= ma3x(1,AGESUP,1,NCOVMAX, 1,NCOVMAX); strcpy(fileresp,"p"); strcat(fileresp,fileres); if((ficresp=fopen(fileresp,"w"))==NULL) { @@ -1183,7 +1184,9 @@ void freqsummary(char fileres[], int ag for (jk=-1; jk<=nlstate+ndeath; jk++) for(m=agemin; m <= agemax+3; m++) freq[i][jk][m]=0; - + + dateintsum=0; + k2cpt=0; for (i=1; i<=imx; i++) { bool=1; if (cptcovn>0) { @@ -1192,26 +1195,21 @@ void freqsummary(char fileres[], int ag bool=0; } if (bool==1) { - if (boolprev==1){ - for(m=fprev1; m<=lprev1; m++){ + for(m=firstpass; m<=lastpass; m++){ + k2=anint[m][i]+(mint[m][i]/12.); + if ((k2>=dateprev1) && (k2<=dateprev2)) { if(agev[m][i]==0) agev[m][i]=agemax+1; if(agev[m][i]==1) agev[m][i]=agemax+2; freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i]; freq[s[m][i]][s[m+1][i]][(int) agemax+3] += weight[i]; + if ((agev[m][i]>1) && (agev[m][i]< (agemax+3))) { + dateintsum=dateintsum+k2; + k2cpt++; + } + } } - else { - for(m=firstpass; m<=lastpass; m++){ - k2=anint[m][i]+(mint[m][i]/12.); - if ((k2>=dateprev1) && (k2<=dateprev2)) { - if(agev[m][i]==0) agev[m][i]=agemax+1; - if(agev[m][i]==1) agev[m][i]=agemax+2; - freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i]; - freq[s[m][i]][s[m+1][i]][(int) agemax+3] += weight[i]; - } - } - } - } + } } if (cptcovn>0) { fprintf(ficresp, "\n#********** Variable "); @@ -1271,15 +1269,17 @@ void freqsummary(char fileres[], int ag } } } + dateintmean=dateintsum/k2cpt; fclose(ficresp); free_ma3x(freq,-1,nlstate+ndeath,-1,nlstate+ndeath,(int) agemin,(int) agemax+3); free_vector(pp,1,nlstate); -} /* End of Freq */ + /* End of Freq */ +} /************ Prevalence ********************/ -void prevalence(int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax, int fprev1,int lprev1, double **mint,double **anint,int boolprev, double dateprev1, double dateprev2) +void prevalence(int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax,double **mint,double **anint, double dateprev1,double dateprev2, double calagedate) { /* Some frequencies */ int i, m, jk, k1, i1, j1, bool, z1,z2,j; @@ -1288,7 +1288,7 @@ void prevalence(int agemin, int agemax, double pos, k2; pp=vector(1,nlstate); - probs= ma3x(1,130 ,1,8, 1,8); + probs= ma3x(1,AGESUP,1,NCOVMAX, 1,NCOVMAX); freq=ma3x(-1,nlstate+ndeath,-1,nlstate+ndeath,agemin,agemax+3); j1=0; @@ -1303,7 +1303,7 @@ void prevalence(int agemin, int agemax, for (i=-1; i<=nlstate+ndeath; i++) for (jk=-1; jk<=nlstate+ndeath; jk++) for(m=agemin; m <= agemax+3; m++) - freq[i][jk][m]=0; + freq[i][jk][m]=0; for (i=1; i<=imx; i++) { bool=1; @@ -1311,29 +1311,20 @@ void prevalence(int agemin, int agemax, for (z1=1; z1<=cptcoveff; z1++) if (covar[Tvaraff[z1]][i]!= nbcode[Tvaraff[z1]][codtab[j1][z1]]) bool=0; - } - if (bool==1) { - if (boolprev==1){ - for(m=fprev1; m<=lprev1; m++){ + } + if (bool==1) { + for(m=firstpass; m<=lastpass; m++){ + k2=anint[m][i]+(mint[m][i]/12.); + if ((k2>=dateprev1) && (k2<=dateprev2)) { if(agev[m][i]==0) agev[m][i]=agemax+1; if(agev[m][i]==1) agev[m][i]=agemax+2; - freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i]; - freq[s[m][i]][s[m+1][i]][(int) agemax+3] += weight[i]; - } - } - else { - for(m=firstpass; m<=lastpass; m++){ - k2=anint[m][i]+(mint[m][i]/12.); - if ((k2>=dateprev1) && (k2<=dateprev2)) { - if(agev[m][i]==0) agev[m][i]=agemax+1; - if(agev[m][i]==1) agev[m][i]=agemax+2; - freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i]; - freq[s[m][i]][s[m+1][i]][(int) agemax+3] += weight[i]; - } + freq[s[m][i]][s[m+1][i]][(int)(agev[m][i]+1-1/12.)] += weight[i]; + freq[s[m][i]][s[m+1][i]][(int)(agemax+3+1)] += weight[i]; } } } } + for(i=(int)agemin; i <= (int)agemax+3; i++){ for(jk=1; jk <=nlstate ; jk++){ for(m=-1, pp[jk]=0; m <=nlstate+ndeath ; m++) @@ -1368,6 +1359,7 @@ void prevalence(int agemin, int agemax, free_vector(pp,1,nlstate); } /* End of Freq */ + /************* Waves Concatenation ***************/ void concatwav(int wav[], int **dh, int **mw, int **s, double *agedc, double **agev, int firstpass, int lastpass, int imx, int nlstate, int stepm) @@ -1894,9 +1886,10 @@ int main() int ju,jl, mi; int i1,j1, k1,k2,k3,jk,aa,bb, stepsize, ij; int jnais,jdc,jint4,jint1,jint2,jint3,**outcome,**adl,*tab; - int mobilav=0, fprev, lprev ,fprevfore=1, lprevfore=1,nforecast,popforecast=0; + int mobilav=0,popforecast=0; int hstepm, nhstepm; - int *popage,boolprev=0;/*boolprev=0 if date and zero if wave*/ + int *popage;/*boolprev=0 if date and zero if wave*/ + double jprev1, mprev1,anprev1,jprev2, mprev2,anprev2; double bage, fage, age, agelim, agebase; double ftolpl=FTOL; @@ -1912,7 +1905,8 @@ int main() double *epj, vepp; double kk1, kk2; double *popeffectif,*popcount; - double dateprev1, dateprev2; + double dateprev1, dateprev2,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2,jprojmean,mprojmean,anprojmean, calagedate; + double yp,yp1,yp2; char version[80]="Imach version 64b, May 2001, INED-EUROREVES "; char *alph[]={"a","a","b","c","d","e"}, str[4]; @@ -1922,8 +1916,7 @@ int main() #include #include char stra[80], strb[80], strc[80], strd[80],stre[80],modelsav[80]; - char strfprev[10], strlprev[10]; - char strfprevfore[10], strlprevfore[10]; + /* long total_usecs; struct timeval start_time, end_time; @@ -1986,33 +1979,7 @@ while((c=getc(ficpar))=='#' && c!= EOF){ } ungetc(c,ficpar); - fscanf(ficpar,"fprevalence=%s lprevalence=%s pop_based=%d\n",strfprev,strlprev,&popbased); - fprintf(ficparo,"fprevalence=%s lprevalence=%s pop_based=%d\n",strfprev,strlprev,popbased); - - /* printf("%s %s",strfprev,strlprev); - exit(0);*/ - while((c=getc(ficpar))=='#' && c!= EOF){ - ungetc(c,ficpar); - fgets(line, MAXLINE, ficpar); - puts(line); - fputs(line,ficparo); - } - ungetc(c,ficpar); - - fscanf(ficpar,"fprevalence=%s lprevalence=%s nforecast=%d mob_average=%d\n",strfprevfore,strlprevfore,&nforecast,&mobilav); - fprintf(ficparo,"fprevalence=%s lprevalence=%s nforecast=%d mob_average=%d\n",strfprevfore,strlprevfore,nforecast,mobilav); - - -while((c=getc(ficpar))=='#' && c!= EOF){ - ungetc(c,ficpar); - fgets(line, MAXLINE, ficpar); - puts(line); - fputs(line,ficparo); - } - ungetc(c,ficpar); - - fscanf(ficpar,"popforecast=%d popfile=%s\n",&popforecast,popfile); - + covar=matrix(0,NCOVMAX,1,n); cptcovn=0; if (strlen(model)>1) cptcovn=nbocc(model,'+')+1; @@ -2175,7 +2142,9 @@ while((c=getc(ficpar))=='#' && c!= EOF){ if ((s[2][i]==3) && (s[3][i]==2)) s[3][i]=3; if ((s[3][i]==3) && (s[4][i]==2)) s[4][i]=3; } - for (i=1; i<=imx; i++) printf("%d %.lf %.lf %.lf %.lf/%.lf %.lf/%.lf %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d\n",num[i],(covar[1][i]), (covar[2][i]), (weight[i]), (moisnais[i]), (annais[i]), (moisdc[i]), (andc[i]), (mint[1][i]), (anint[1][i]), (s[1][i]), (mint[2][i]), (anint[2][i]), (s[2][i]), (mint[3][i]), (anint[3][i]), (s[3][i]), (mint[4][i]), (anint[4][i]), (s[4][i]));*/ + + for (i=1; i<=imx; i++) + if (covar[1][i]==0) printf("%d %.lf %.lf %.lf %.lf/%.lf %.lf/%.lf %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d\n",num[i],(covar[1][i]), (covar[2][i]), (weight[i]), (moisnais[i]), (annais[i]), (moisdc[i]), (andc[i]), (mint[1][i]), (anint[1][i]), (s[1][i]), (mint[2][i]), (anint[2][i]), (s[2][i]), (mint[3][i]), (anint[3][i]), (s[3][i]), (mint[4][i]), (anint[4][i]), (s[4][i]));*/ /* Calculation of the number of parameter from char model*/ Tvar=ivector(1,15); @@ -2358,26 +2327,9 @@ printf("Total number of individuals= %d, /* Calculates basic frequencies. Computes observed prevalence at single age and prints on file fileres'p'. */ - if ((nbocc(strfprev,'/')==1) && (nbocc(strlprev,'/')==1)){ - boolprev=0; - cutv(stra,strb,strfprev,'/'); - dateprev1=(double)(atoi(strb)+atoi(stra)/12.); - cutv(stra,strb,strlprev,'/'); - dateprev2=(double)(atoi(strb)+atoi(stra)/12.); - } - - else if ((nbocc(strfprev,'/')==0) &&(nbocc(strlprev,'/')==0)){ - boolprev=1; - fprev=atoi(strfprev); lprev=atoi(strlprev); - } - else { - printf("Error in statement lprevalence or fprevalence\n"); - goto end; - } + - freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax, fprev, lprev,mint,anint,boolprev,dateprev1,dateprev2); - - pmmij= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */ + pmmij= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */ oldms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */ newms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */ savms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */ @@ -2393,8 +2345,7 @@ printf("Total number of individuals= %d, /*--------- results files --------------*/ fprintf(ficres,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate, ndeath, maxwav, mle,weightopt,model); - fprintf(ficres,"fprevalence=%s lprevalence=%s pop_based=%d\n",strfprev,strlprev,popbased); - fprintf(ficres,"fprevalence=%s lprevalence=%s nforecast=%d mob_average=%d\n",strfprevfore,strlprevfore,nforecast,mobilav); + jk=1; fprintf(ficres,"# Parameters\n"); @@ -2472,11 +2423,53 @@ printf("Total number of individuals= %d, fage = agemax; } - fprintf(ficres,"# agemin agemax for life expectancy, bage fage (if mle==0 ie no data nor Max likelihood).\n"); + fprintf(ficres,"# agemin agemax for life expectancy.\n"); + fprintf(ficres,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax,bage,fage); + fprintf(ficparo,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax,bage,fage); + + while((c=getc(ficpar))=='#' && c!= EOF){ + ungetc(c,ficpar); + fgets(line, MAXLINE, ficpar); + puts(line); + fputs(line,ficparo); + } + ungetc(c,ficpar); + + fscanf(ficpar,"begin-prev-date=%lf/%lf/%lf end-prev-date=%lf/%lf/%lf mob_average=%d\n",&jprev1, &mprev1,&anprev1,&jprev2, &mprev2,&anprev2,&mobilav); + fprintf(ficparo,"begin-prev-date=%.lf/%.lf/%.lf end-prev-date=%.lf/%.lf/%.lf mob_average=%d\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2,mobilav); + fprintf(ficres,"begin-prev-date=%.lf/%.lf/%.lf end-prev-date=%.lf/%.lf/%.lf mob_average=%d\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2,mobilav); + + while((c=getc(ficpar))=='#' && c!= EOF){ + ungetc(c,ficpar); + fgets(line, MAXLINE, ficpar); + puts(line); + fputs(line,ficparo); + } + ungetc(c,ficpar); + - -/*------------ gnuplot -------------*/ + dateprev1=anprev1+mprev1/12.+jprev1/365.; + dateprev2=anprev2+mprev2/12.+jprev2/365.; + + fscanf(ficpar,"pop_based=%d\n",&popbased); + fprintf(ficparo,"pop_based=%d\n",popbased); + fprintf(ficres,"pop_based=%d\n",popbased); + + while((c=getc(ficpar))=='#' && c!= EOF){ + ungetc(c,ficpar); + fgets(line, MAXLINE, ficpar); + puts(line); + fputs(line,ficparo); + } + ungetc(c,ficpar); + fscanf(ficpar,"popforecast=%d popfile=%s starting-proj-date=%lf/%lf/%lf final-proj-date=%lf/%lf/%lf\n",&popforecast,popfile,&jproj1,&mproj1,&anproj1,&jproj2,&mproj2,&anproj2); +fprintf(ficparo,"popforecast=%d popfile=%s starting-proj-date=%.lf/%.lf/%.lf final-proj-date=%.lf/%.lf/%.lf\n",popforecast,popfile,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2); +fprintf(ficres,"popforecast=%d popfile=%s starting-proj-date=%.lf/%.lf/%.lf final-proj-date=%.lf/%.lf/%.lf\n",popforecast,popfile,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2); + + freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax,mint,anint,dateprev1,dateprev2); + + /*------------ gnuplot -------------*/ chdir(pathcd); if((ficgp=fopen("graph.plt","w"))==NULL) { printf("Problem with file graph.gp");goto end; @@ -2832,6 +2825,10 @@ fclose(fichtm); fclose(ficrespij); /*---------- Forecasting ------------------*/ + calagedate=(anproj1+mproj1/12.+jproj1/365.-dateintmean)*YEARM; + + prevalence(agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax,mint,anint,dateprev1,dateprev2, calagedate); + strcpy(fileresf,"f"); strcat(fileresf,fileres); @@ -2840,25 +2837,6 @@ fclose(fichtm); } printf("Computing forecasting: result on file '%s' \n", fileresf); - if ((nbocc(strfprevfore,'/')==1) && (nbocc(strlprevfore,'/')==1)){ - boolprev=0; - cutv(stra,strb,strfprevfore,'/'); - dateprev1=(double)(atoi(strb)+atoi(stra)/12.); - cutv(stra,strb,strlprevfore,'/'); - dateprev2=(double)(atoi(strb)+atoi(stra)/12.); - } - - else if ((nbocc(strfprevfore,'/')==0) &&(nbocc(strlprevfore,'/')==0)){ - boolprev=1; - fprev=atoi(strfprevfore); lprev=atoi(strlprevfore); - } - else { - printf("Error in statement lprevalence or fprevalence\n"); - goto end; - } - - prevalence(agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax, fprevfore, lprevfore,mint,anint,boolprev,dateprev1,dateprev2); - free_matrix(mint,1,maxwav,1,n); free_matrix(anint,1,maxwav,1,n); free_matrix(agev,1,maxwav,1,imx); @@ -2889,9 +2867,17 @@ fclose(fichtm); if (stepm<=12) stepsize=1; agelim=AGESUP; - hstepm=stepsize*YEARM; /* Every year of age */ + /*hstepm=stepsize*YEARM; *//* Every year of age */ + hstepm=1; hstepm=hstepm/stepm; /* Typically 2 years, = 2 years/6 months = 4 */ - + yp1=modf(dateintmean,&yp); + anprojmean=yp; + yp2=modf((yp1*12),&yp); + mprojmean=yp; + yp1=modf((yp2*30.5),&yp); + jprojmean=yp; + fprintf(ficresf,"Estimated date of observed prevalence: %.lf/%.lf/%.lf ",jprojmean,mprojmean,anprojmean); + if (popforecast==1) { if((ficpop=fopen(popfile,"r"))==NULL) { printf("Problem with population file : %s\n",popfile);goto end; @@ -2906,40 +2892,26 @@ fclose(fichtm); i=i+1; } imx=i; - - for (i=1; i=bage; agedeb--){ - fprintf(ficresf,"\n%.f %.f 0",agedeb, agedeb); - if (mobilav==1) { - for(j=1; j<=nlstate;j++) - fprintf(ficresf," %.3f",mobaverage[(int)agedeb][j][cptcod]); - } - else { - for(j=1; j<=nlstate;j++) - fprintf(ficresf," %.3f",probs[(int)agedeb][j][cptcod]); - } - - for(j=1; j<=ndeath;j++) fprintf(ficresf," 0.00000"); - if (popforecast==1) fprintf(ficresf," [%.f] ",popeffectif[(int)agedeb]); - } - - for (cpt=1; cpt<=nforecast;cpt++) { + + for (cpt=0; cpt<=1;cpt++) { fprintf(ficresf,"\n"); - for (agedeb=fage; agedeb>=bage; agedeb--){ /* If stepm=6 months */ + fprintf(ficresf,"\nForecasting at date %.lf/%.lf/%.lf ",jproj1,mproj1,anproj1+cpt); + for (agedeb=(fage-(1/12.)); agedeb>=(bage-(1/12.)); agedeb--){ /* If stepm=6 months */ nhstepm=(int) rint((agelim-agedeb)*YEARM/stepm); nhstepm = nhstepm/hstepm; /*printf("agedeb=%.lf stepm=%d hstepm=%d nhstepm=%d \n",agedeb,stepm,hstepm,nhstepm);*/ @@ -2949,27 +2921,31 @@ fclose(fichtm); hpxij(p3mat,nhstepm,agedeb,hstepm,p,nlstate,stepm,oldm,savm, k); for (h=0; h<=nhstepm; h++){ - - if (h*hstepm/YEARM*stepm==cpt) - fprintf(ficresf,"\n%.f %.f %.f",agedeb, agedeb+ h*hstepm/YEARM*stepm, h*hstepm/YEARM*stepm); - - - for(j=1; j<=nlstate+ndeath;j++) { - kk1=0.;kk2=0; - for(i=1; i<=nlstate;i++) { - if (mobilav==1) + if (h==(int) (calagedate+12*cpt)) { + fprintf(ficresf,"h=%d ", h); + fprintf(ficresf,"\n %f %f ",agedeb,agedeb+h*hstepm/YEARM*stepm); + } + for(j=1; j<=nlstate+ndeath;j++) { + kk1=0.;kk2=0; + for(i=1; i<=nlstate;i++) { + if (mobilav==1) kk1=kk1+p3mat[i][j][h]*mobaverage[(int)agedeb][i][cptcod]; - else kk1=kk1+p3mat[i][j][h]*probs[(int)agedeb][i][cptcod]; - if (popforecast==1) kk2=kk1*popeffectif[(int)agedeb]; + else { + kk1=kk1+p3mat[i][j][h]*probs[(int)(agedeb+1)][i][cptcod]; + /* fprintf(ficresf," p3=%.3f p=%.3f ", p3mat[i][j][h],probs[(int)(agedeb)+1][i][cptcod]);*/ + } + + if (popforecast==1) kk2=kk1*popeffectif[(int)agedeb]; + } + + if (h==(int)(calagedate+12*cpt)){ + fprintf(ficresf," %.3f", kk1); + + if (popforecast==1) fprintf(ficresf," [%.f]", kk2); } - if (h*hstepm/YEARM*stepm==cpt) { - fprintf(ficresf," %.3f", kk1); - if (popforecast==1) fprintf(ficresf," [%.f]", kk2); - } } } free_ma3x(p3mat,1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm); - } } }