--- imach/src/imach.c 2017/04/03 10:17:47 1.258 +++ imach/src/imach.c 2017/04/26 06:01:29 1.264 @@ -1,6 +1,24 @@ -/* $Id: imach.c,v 1.258 2017/04/03 10:17:47 brouard Exp $ +/* $Id: imach.c,v 1.264 2017/04/26 06:01:29 brouard Exp $ $State: Exp $ $Log: imach.c,v $ + Revision 1.264 2017/04/26 06:01:29 brouard + Summary: Labels in graphs + + Revision 1.263 2017/04/24 15:23:15 brouard + Summary: to save + + Revision 1.262 2017/04/18 16:48:12 brouard + *** empty log message *** + + Revision 1.261 2017/04/05 10:14:09 brouard + Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1 + + Revision 1.260 2017/04/04 17:46:59 brouard + Summary: Gnuplot indexations fixed (humm) + + Revision 1.259 2017/04/04 13:01:16 brouard + Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3 + Revision 1.258 2017/04/03 10:17:47 brouard Summary: Version 0.99r12 @@ -976,12 +994,12 @@ typedef struct { #define ODIRSEPARATOR '\\' #endif -/* $Id: imach.c,v 1.258 2017/04/03 10:17:47 brouard Exp $ */ +/* $Id: imach.c,v 1.264 2017/04/26 06:01:29 brouard Exp $ */ /* $State: Exp $ */ #include "version.h" char version[]=__IMACH_VERSION__; char copyright[]="February 2016,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121), Intel Software 2015-2018"; -char fullversion[]="$Revision: 1.258 $ $Date: 2017/04/03 10:17:47 $"; +char fullversion[]="$Revision: 1.264 $ $Date: 2017/04/26 06:01:29 $"; char strstart[80]; char optionfilext[10], optionfilefiname[FILENAMELENGTH]; int erreur=0, nberr=0, nbwarn=0; /* Error number, number of errors number of warnings */ @@ -2600,7 +2618,7 @@ Earliest age to start was %d-%d=%d, ncvl /* double **bprevalim(double **bprlim, double ***prevacurrent, int nlstate, double x[], double age, double **oldm, double **savm, double **dnewm, double **doldm, double **dsavm, double ftolpl, int *ncvyear, int ij) */ double **bprevalim(double **bprlim, double ***prevacurrent, int nlstate, double x[], double age, double ftolpl, int *ncvyear, int ij, int nres) { - /* Computes the prevalence limit in each live state at age x and covariate ij by left multiplying the unit + /* Computes the prevalence limit in each live state at age x and for covariate combination ij (<=2**cptcoveff) by left multiplying the unit matrix by transitions matrix until convergence is reached with precision ftolpl */ /* Wx= Wx-1 Px-1= Wx-2 Px-2 Px-1 = Wx-n Px-n ... Px-2 Px-1 I */ /* Wx is row vector: population in state 1, population in state 2, population dead */ @@ -2661,7 +2679,7 @@ Earliest age to start was %d-%d=%d, ncvl for (k=1; k<=nsd;k++) { /* For single dummy covariates only */ /* Here comes the value of the covariate 'ij' after renumbering k with single dummy covariates */ cov[2+nagesqr+TvarsDind[k]]=nbcode[TvarsD[k]][codtabm(ij,k)]; - /* printf("bprevalim Dummy combi=%d k=%d TvarsD[%d]=V%d TvarsDind[%d]=%d nbcode=%d cov=%lf codtabm(%d,Tvar[%d])=%d \n",ij,k, k, TvarsD[k],k,TvarsDind[k],nbcode[TvarsD[k]][codtabm(ij,k)],cov[2+nagesqr+TvarsDind[k]], ij, k, codtabm(ij,k)); */ + /* printf("bprevalim Dummy agefin=%.0f combi=%d k=%d TvarsD[%d]=V%d TvarsDind[%d]=%d nbcode=%d cov[%d]=%lf codtabm(%d,Tvar[%d])=%d \n",agefin,ij,k, k, TvarsD[k],k,TvarsDind[k],nbcode[TvarsD[k]][codtabm(ij,k)],2+nagesqr+TvarsDind[k],cov[2+nagesqr+TvarsDind[k]], ij, k, codtabm(ij,k)); */ } /* for (k=1; k<=cptcovn;k++) { */ /* /\* cov[2+nagesqr+k]=nbcode[Tvar[k]][codtabm(ij,Tvar[k])]; *\/ */ @@ -4604,6 +4622,8 @@ Title=%s
Datafile=%s Firstpass=%d La if( iage <= iagemax){ if(pos>=1.e-5){ fprintf(ficresp," %d %.5f %.0f %.0f",iage,prop[jk][iage]/pospropta, prop[jk][iage],pospropta); + /* fprintf(ficresp, "%d %d %d %.5f %.0f %.0f",Tvaraff[z1],nbcode[Tvaraff[z1]][codtabm(j1,z1)],iage,prop[jk][iage]/pospropta, prop[jk][iage],pospropta); */ + fprintf(ficresphtm,"%d%.5f%.0f%.0f",iage,prop[jk][iage]/pospropta, prop[jk][iage],pospropta); /*probs[iage][jk][j1]= pp[jk]/pos;*/ /*printf("\niage=%d jk=%d j1=%d %.5f %.0f %.0f %f",iage,jk,j1,pp[jk]/pos, pp[jk],pos,probs[iage][jk][j1]);*/ @@ -4656,7 +4676,8 @@ Title=%s
Datafile=%s Firstpass=%d La if(posproptt < 1.e-5){ fprintf(ficresphtm,"\n

This combination (%d) is not valid and no result will be produced

",j1); fprintf(ficresphtmfr,"\n

This combination (%d) is not valid and no result will be produced

",j1); - fprintf(ficres,"\n This combination (%d) is not valid and no result will be produced\n\n",j1); + fprintf(ficlog,"# This combination (%d) is not valid and no result will be produced\n",j1); + printf("# This combination (%d) is not valid and no result will be produced\n",j1); invalidvarcomb[j1]=1; }else{ fprintf(ficresphtm,"\n

This combination (%d) is valid and result will be produced.

",j1); @@ -4938,10 +4959,10 @@ void concatwav(int wav[], int **dh, int #else if(s[m][i]==-1 && (int) andc[i] == 9999 && (int)anint[m][i] != 9999){ if(firsthree == 0){ - printf("Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as pi. .\nOthers in log file only\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m); + printf("Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as 1-p%d%d .\nOthers in log file only\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m, s[m][i], nlstate+ndeath); firsthree=1; } - fprintf(ficlog,"Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as pi. .\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m); + fprintf(ficlog,"Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as 1-p%d%d .\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m, s[m][i], nlstate+ndeath); mw[++mi][i]=m; mli=m; } @@ -5019,7 +5040,7 @@ void concatwav(int wav[], int **dh, int if (stepm <=0) dh[mi][i]=1; else{ - if (s[mw[mi+1][i]][i] > nlstate) { /* A death */ + if (s[mw[mi+1][i]][i] > nlstate) { /* A death, but what if date is unknown? */ if (agedc[i] < 2*AGESUP) { j= rint(agedc[i]*12-agev[mw[mi][i]][i]*12); if(j==0) j=1; /* Survives at least one month after exam */ @@ -6419,11 +6440,47 @@ void printinghtml(char fileresu[], char %s
\n", subdirf2(fileresu,"F_"),subdirf2(fileresu,"F_")); } - fprintf(fichtm," \n