# Imach version 0.07a, May 2004, INED-EUROREVES # biaspar.gp set missing 'NaNq' cd "D:/imachcvs/imach/html/doc/" set out "biaspar/vbiaspar11.png" #set out "vbiaspar11.png" set xlabel "Age" set ylabel "Probability" set ter png small set size 0.65,0.65 plot [70:95] "biaspar/vplrbiaspar.txt" every :::0::0 u 1:2 "%lf %lf (%lf) %*lf (%*lf)" t"Stable prevalence" w l 0,"biaspar/vplrbiaspar.txt" every :::0::0 u 1:($2+1.96*$3) "%lf %lf (%lf) %*lf (%*lf)" t"95% CI" w l 1,"biaspar/vplrbiaspar.txt" every :::0::0 u 1:($2-1.96*$3) "%lf %lf (%lf) %*lf (%*lf)" t"" w l 1,"biaspar/prbiaspar.txt" every :::0::0 u 1:($2) t"Observed prevalence " w l 2 set out "biaspar/vbiaspar21.png" #set out "vbiaspar21.png" set xlabel "Age" set ylabel "Probability" set ter png small set size 0.65,0.65 plot [70:95] "biaspar/vplrbiaspar.txt" every :::0::0 u 1:2 "%lf %*lf (%*lf) %lf (%lf)" t"Stable prevalence" w l 0,"biaspar/vplrbiaspar.txt" every :::0::0 u 1:($2+1.96*$3) "%lf %*lf (%*lf) %lf (%lf)" t"95% CI" w l 1,"biaspar/vplrbiaspar.txt" every :::0::0 u 1:($2-1.96*$3) "%lf %*lf (%*lf) %lf (%lf)" t"" w l 1,"biaspar/prbiaspar.txt" every :::0::0 u 1:($6) t"Observed prevalence " w l 2 set out "biaspar/ebiaspar1.png" set ylabel "Years" set ter png small set size 0.65,0.65 plot [70:95] "biaspar/trbiaspar.txt" every :::0::0 u 1:2 "%lf %lf (%lf) %*lf (%*lf) %*lf (%*lf)" t"TLE" w l ,"biaspar/trbiaspar.txt" every :::0::0 u 1:($2-$3*2) "%lf %lf (%lf) %*lf (%*lf) %*lf (%*lf)" t"" w l 0,"biaspar/trbiaspar.txt" every :::0::0 u 1:($2+$3*2) "%lf %lf (%lf) %*lf (%*lf) %*lf (%*lf)" t"" w l 0,"biaspar/trbiaspar.txt" every :::0::0 u 1:2 "%lf %*lf (%*lf) %lf (%lf) %*lf (%*lf)" t"LE in state (1)" w l ,"biaspar/trbiaspar.txt" every :::0::0 u 1:($2-$3*2) "%lf %*lf (%*lf) %lf (%lf) %*lf (%*lf)" t"" w l 0,"biaspar/trbiaspar.txt" every :::0::0 u 1:($2+$3*2) "%lf %*lf (%*lf) %lf (%lf) %*lf (%*lf)" t"" w l 0,"biaspar/trbiaspar.txt" every :::0::0 u 1:2 "%lf %*lf (%*lf) %*lf (%*lf) %lf (%lf)" t"LE in state (2)" w l ,"biaspar/trbiaspar.txt" every :::0::0 u 1:($2-$3*2) "%lf %*lf (%*lf) %*lf (%*lf) %lf (%lf)" t"" w l 0,"biaspar/trbiaspar.txt" every :::0::0 u 1:($2+$3*2) "%lf %*lf (%*lf) %*lf (%*lf) %lf (%lf)" t"" w l 0 set out "biaspar/expbiaspar11.png" set ter png small set size 0.65,0.65 plot [70:95] "biaspar/erbiaspar.txt" every :::0::0 u 1:2 t "e11" w l ,"biaspar/erbiaspar.txt" every :::0::0 u 1:4 t "e12" w l set out "biaspar/expbiaspar21.png" set ter png small set size 0.65,0.65 plot [70:95] "biaspar/erbiaspar.txt" every :::0::0 u 1:6 t "e21" w l ,"biaspar/erbiaspar.txt" every :::0::0 u 1:8 t "e22" w l set out "biaspar/pbiaspar11.png" set xlabel "Age" set ylabel "Probability" set ter png small set size 0.65,0.65 unset log y plot [70:95] "biaspar/pijrbiaspar.txt" u ($1==1 ? ($3):1/0):($5/($4+$5)) t"prev(1,2)" w l,"biaspar/pijrbiaspar.txt" u ($1==1 ? ($3):1/0):($8/($7+$8)) t"prev(2,2)" w l set out "biaspar/pbiaspar21.png" set xlabel "Age" set ylabel "Probability" set ter png small set size 0.65,0.65 unset log y plot [70:95] "biaspar/pijrbiaspar.txt" u ($1==1 ? ($3):1/0):($6/($4+$5)) t"prev(2,3)" w l,"biaspar/pijrbiaspar.txt" u ($1==1 ? ($3):1/0):($12/($10+$11)) t"prev(3,3)" w l p1=-12.245160 p2=0.092357 p3=-10.672078 p4=0.060971 p5=-2.645815 p6=-0.022320 p7=-4.773208 p8=0.007857 set out "biaspar/pebiaspar11.png" set title "Probability" set ter png small set size 0.65,0.65 set log y plot [70:95] exp(p1+p2*x)/(1+exp(p1+p2*x)+exp(p3+p4*x)) t "p12" , exp(p3+p4*x)/(1+exp(p1+p2*x)+exp(p3+p4*x)) t "p13" , exp(p5+p6*x)/(1+exp(p5+p6*x)+exp(p7+p8*x)) t "p21" , exp(p7+p8*x)/(1+exp(p5+p6*x)+exp(p7+p8*x)) t "p23" set out "biaspar/pebiaspar12.png" set ylabel "Quasi-incidence per year" set ter png small set size 0.65,0.65 set log y plot [70:95] 12.000000*exp(p1+p2*x)/(1+exp(p1+p2*x)+exp(p3+p4*x)) t "p12" , 12.000000*exp(p3+p4*x)/(1+exp(p1+p2*x)+exp(p3+p4*x)) t "p13" , 12.000000*exp(p5+p6*x)/(1+exp(p5+p6*x)+exp(p7+p8*x)) t "p21" , 12.000000*exp(p7+p8*x)/(1+exp(p5+p6*x)+exp(p7+p8*x)) t "p23" # Routine varprob set parametric;unset label set log y;set log x; set xlabel "p13 (year-1)";set ylabel "p12 (year-1)" set ter png small set size 0.65,0.65 set out "biaspar/varpijgrbiaspar113-12.png" set label "65" at 1.459e-002, 2.328e-002 center # Age 65, p13 - p12 plot [-pi:pi] 1.459e-002+ 2.000*( 6.866e-001* 2.057e-003*cos(t)+ 7.270e-001* 1.402e-003*sin(t)), 2.328e-002 +2.000*(-7.270e-001* 2.057e-003*cos(t)+ 6.866e-001* 1.402e-003*sin(t)) not # Age 70, p13 - p12 set label "70" at 1.976e-002, 3.688e-002 center replot 1.976e-002+ 2.000*( 5.191e-001* 2.326e-003*cos(t)+ 8.547e-001* 1.471e-003*sin(t)), 3.688e-002 +2.000*(-8.547e-001* 2.326e-003*cos(t)+ 5.191e-001* 1.471e-003*sin(t)) not # Age 75, p13 - p12 set label "75" at 2.674e-002, 5.839e-002 center replot 2.674e-002+ 2.000*( 4.119e-001* 2.525e-003*cos(t)+ 9.112e-001* 1.387e-003*sin(t)), 5.839e-002 +2.000*(-9.112e-001* 2.525e-003*cos(t)+ 4.119e-001* 1.387e-003*sin(t)) not # Age 80, p13 - p12 set label "80" at 3.614e-002, 9.233e-002 center replot 3.614e-002+ 2.000*( 3.972e-001* 2.741e-003*cos(t)+ 9.177e-001* 1.382e-003*sin(t)), 9.233e-002 +2.000*(-9.177e-001* 2.741e-003*cos(t)+ 3.972e-001* 1.382e-003*sin(t)) not # Age 85, p13 - p12 set label "85" at 4.875e-002, 1.457e-001 center replot 4.875e-002+ 2.000*( 3.964e-001* 4.133e-003*cos(t)+ 9.181e-001* 2.272e-003*sin(t)), 1.457e-001 +2.000*(-9.181e-001* 4.133e-003*cos(t)+ 3.964e-001* 2.272e-003*sin(t)) not # Age 90, p13 - p12 set label "90" at 6.557e-002, 2.292e-001 center replot 6.557e-002+ 2.000*( 2.870e-001* 8.981e-003*cos(t)+ 9.579e-001* 4.671e-003*sin(t)), 2.292e-001 +2.000*(-9.579e-001* 8.981e-003*cos(t)+ 2.870e-001* 4.671e-003*sin(t)) not # Age 95, p13 - p12 set label "95" at 8.778e-002, 3.591e-001 center replot 8.778e-002+ 2.000*( 2.106e-001* 1.972e-002*cos(t)+ 9.776e-001* 8.813e-003*sin(t)), 3.591e-001 +2.000*(-9.776e-001* 1.972e-002*cos(t)+ 2.106e-001* 8.813e-003*sin(t)) not set out "biaspar/varpijgrbiaspar113-12.png";replot; set parametric;unset label set log y;set log x; set xlabel "p21 (year-1)";set ylabel "p12 (year-1)" set ter png small set size 0.65,0.65 set out "biaspar/varpijgrbiaspar121-12.png" set label "65" at 1.936e-001, 2.328e-002 center # Age 65, p21 - p12 plot [-pi:pi] 1.936e-001+ 2.000*( 9.998e-001* 3.151e-002*cos(t)+-1.959e-002* 1.668e-003*sin(t)), 2.328e-002 +2.000*( 1.959e-002* 3.151e-002*cos(t)+ 9.998e-001* 1.668e-003*sin(t)) not # Age 70, p21 - p12 set label "70" at 1.734e-001, 3.688e-002 center replot 1.734e-001+ 2.000*( 9.994e-001* 2.161e-002*cos(t)+-3.389e-002* 2.001e-003*sin(t)), 3.688e-002 +2.000*( 3.389e-002* 2.161e-002*cos(t)+ 9.994e-001* 2.001e-003*sin(t)) not # Age 75, p21 - p12 set label "75" at 1.552e-001, 5.839e-002 center replot 1.552e-001+ 2.000*( 9.983e-001* 1.378e-002*cos(t)+-5.800e-002* 2.235e-003*sin(t)), 5.839e-002 +2.000*( 5.800e-002* 1.378e-002*cos(t)+ 9.983e-001* 2.235e-003*sin(t)) not # Age 80, p21 - p12 set label "80" at 1.389e-001, 9.233e-002 center replot 1.389e-001+ 2.000*( 9.949e-001* 8.292e-003*cos(t)+-1.011e-001* 2.447e-003*sin(t)), 9.233e-002 +2.000*( 1.011e-001* 8.292e-003*cos(t)+ 9.949e-001* 2.447e-003*sin(t)) not # Age 85, p21 - p12 set label "85" at 1.243e-001, 1.457e-001 center replot 1.243e-001+ 2.000*( 9.669e-001* 6.441e-003*cos(t)+-2.553e-001* 3.657e-003*sin(t)), 1.457e-001 +2.000*( 2.553e-001* 6.441e-003*cos(t)+ 9.669e-001* 3.657e-003*sin(t)) not # Age 90, p21 - p12 set label "90" at 1.112e-001, 2.292e-001 center replot 1.112e-001+ 2.000*( 5.879e-001* 9.566e-003*cos(t)+-8.090e-001* 6.788e-003*sin(t)), 2.292e-001 +2.000*( 8.090e-001* 9.566e-003*cos(t)+ 5.879e-001* 6.788e-003*sin(t)) not # Age 95, p21 - p12 set label "95" at 9.953e-002, 3.591e-001 center replot 9.953e-002+ 2.000*( 2.290e-001* 1.977e-002*cos(t)+-9.734e-001* 9.572e-003*sin(t)), 3.591e-001 +2.000*( 9.734e-001* 1.977e-002*cos(t)+ 2.290e-001* 9.572e-003*sin(t)) not set out "biaspar/varpijgrbiaspar121-12.png";replot; set parametric;unset label set log y;set log x; set xlabel "p23 (year-1)";set ylabel "p12 (year-1)" set ter png small set size 0.65,0.65 set out "biaspar/varpijgrbiaspar123-12.png" set label "65" at 1.640e-001, 2.328e-002 center # Age 65, p23 - p12 plot [-pi:pi] 1.640e-001+ 2.000*( 9.995e-001* 2.107e-002*cos(t)+-3.113e-002* 1.654e-003*sin(t)), 2.328e-002 +2.000*( 3.113e-002* 2.107e-002*cos(t)+ 9.995e-001* 1.654e-003*sin(t)) not # Age 70, p23 - p12 set label "70" at 1.708e-001, 3.688e-002 center replot 1.708e-001+ 2.000*( 9.988e-001* 1.745e-002*cos(t)+-4.823e-002* 1.959e-003*sin(t)), 3.688e-002 +2.000*( 4.823e-002* 1.745e-002*cos(t)+ 9.988e-001* 1.959e-003*sin(t)) not # Age 75, p23 - p12 set label "75" at 1.778e-001, 5.839e-002 center replot 1.778e-001+ 2.000*( 9.971e-001* 1.368e-002*cos(t)+-7.559e-002* 2.139e-003*sin(t)), 5.839e-002 +2.000*( 7.559e-002* 1.368e-002*cos(t)+ 9.971e-001* 2.139e-003*sin(t)) not # Age 80, p23 - p12 set label "80" at 1.851e-001, 9.233e-002 center replot 1.851e-001+ 2.000*( 9.925e-001* 1.009e-002*cos(t)+-1.220e-001* 2.279e-003*sin(t)), 9.233e-002 +2.000*( 1.220e-001* 1.009e-002*cos(t)+ 9.925e-001* 2.279e-003*sin(t)) not # Age 85, p23 - p12 set label "85" at 1.926e-001, 1.457e-001 center replot 1.926e-001+ 2.000*( 9.722e-001* 7.671e-003*cos(t)+-2.342e-001* 3.560e-003*sin(t)), 1.457e-001 +2.000*( 2.342e-001* 7.671e-003*cos(t)+ 9.722e-001* 3.560e-003*sin(t)) not # Age 90, p23 - p12 set label "90" at 2.004e-001, 2.292e-001 center replot 2.004e-001+ 2.000*( 6.128e-001* 9.486e-003*cos(t)+-7.902e-001* 7.229e-003*sin(t)), 2.292e-001 +2.000*( 7.902e-001* 9.486e-003*cos(t)+ 6.128e-001* 7.229e-003*sin(t)) not # Age 95, p23 - p12 set label "95" at 2.085e-001, 3.591e-001 center replot 2.085e-001+ 2.000*( 2.248e-001* 1.970e-002*cos(t)+-9.744e-001* 1.148e-002*sin(t)), 3.591e-001 +2.000*( 9.744e-001* 1.970e-002*cos(t)+ 2.248e-001* 1.148e-002*sin(t)) not set out "biaspar/varpijgrbiaspar123-12.png";replot; set parametric;unset label set log y;set log x; set xlabel "p21 (year-1)";set ylabel "p13 (year-1)" set ter png small set size 0.65,0.65 set out "biaspar/varpijgrbiaspar121-13.png" set label "65" at 1.936e-001, 1.459e-002 center # Age 65, p21 - p13 plot [-pi:pi] 1.936e-001+ 2.000*( 1.000e+000* 3.150e-002*cos(t)+-1.880e-003* 1.741e-003*sin(t)), 1.459e-002 +2.000*( 1.880e-003* 3.150e-002*cos(t)+ 1.000e+000* 1.741e-003*sin(t)) not # Age 70, p21 - p13 set label "70" at 1.734e-001, 1.976e-002 center replot 1.734e-001+ 2.000*( 1.000e+000* 2.160e-002*cos(t)+-1.974e-003* 1.743e-003*sin(t)), 1.976e-002 +2.000*( 1.974e-003* 2.160e-002*cos(t)+ 1.000e+000* 1.743e-003*sin(t)) not # Age 75, p21 - p13 set label "75" at 1.552e-001, 2.674e-002 center replot 1.552e-001+ 2.000*( 1.000e+000* 1.376e-002*cos(t)+-1.404e-003* 1.636e-003*sin(t)), 2.674e-002 +2.000*( 1.404e-003* 1.376e-002*cos(t)+ 1.000e+000* 1.636e-003*sin(t)) not # Age 80, p21 - p13 set label "80" at 1.389e-001, 3.614e-002 center replot 1.389e-001+ 2.000*( 1.000e+000* 8.253e-003*cos(t)+-3.684e-003* 1.671e-003*sin(t)), 3.614e-002 +2.000*( 3.684e-003* 8.253e-003*cos(t)+ 1.000e+000* 1.671e-003*sin(t)) not # Age 85, p21 - p13 set label "85" at 1.243e-001, 4.875e-002 center replot 1.243e-001+ 2.000*( 9.992e-001* 6.301e-003*cos(t)+-4.077e-002* 2.642e-003*sin(t)), 4.875e-002 +2.000*( 4.077e-002* 6.301e-003*cos(t)+ 9.992e-001* 2.642e-003*sin(t)) not # Age 90, p21 - p13 set label "90" at 1.112e-001, 6.557e-002 center replot 1.112e-001+ 2.000*( 9.932e-001* 7.891e-003*cos(t)+-1.164e-001* 5.116e-003*sin(t)), 6.557e-002 +2.000*( 1.164e-001* 7.891e-003*cos(t)+ 9.932e-001* 5.116e-003*sin(t)) not # Age 95, p21 - p13 set label "95" at 9.953e-002, 8.778e-002 center replot 9.953e-002+ 2.000*( 9.056e-001* 1.057e-002*cos(t)+-4.241e-001* 9.328e-003*sin(t)), 8.778e-002 +2.000*( 4.241e-001* 1.057e-002*cos(t)+ 9.056e-001* 9.328e-003*sin(t)) not set out "biaspar/varpijgrbiaspar121-13.png";replot; set parametric;unset label set log y;set log x; set xlabel "p23 (year-1)";set ylabel "p13 (year-1)" set ter png small set size 0.65,0.65 set out "biaspar/varpijgrbiaspar123-13.png" set label "65" at 1.640e-001, 1.459e-002 center # Age 65, p23 - p13 plot [-pi:pi] 1.640e-001+ 2.000*( 9.993e-001* 2.108e-002*cos(t)+ 3.790e-002* 1.549e-003*sin(t)), 1.459e-002 +2.000*(-3.790e-002* 2.108e-002*cos(t)+ 9.993e-001* 1.549e-003*sin(t)) not # Age 70, p23 - p13 set label "70" at 1.708e-001, 1.976e-002 center replot 1.708e-001+ 2.000*( 9.988e-001* 1.745e-002*cos(t)+ 4.951e-002* 1.516e-003*sin(t)), 1.976e-002 +2.000*(-4.951e-002* 1.745e-002*cos(t)+ 9.988e-001* 1.516e-003*sin(t)) not # Age 75, p23 - p13 set label "75" at 1.778e-001, 2.674e-002 center replot 1.778e-001+ 2.000*( 9.978e-001* 1.368e-002*cos(t)+ 6.667e-002* 1.362e-003*sin(t)), 2.674e-002 +2.000*(-6.667e-002* 1.368e-002*cos(t)+ 9.978e-001* 1.362e-003*sin(t)) not # Age 80, p23 - p13 set label "80" at 1.851e-001, 3.614e-002 center replot 1.851e-001+ 2.000*( 9.950e-001* 1.006e-002*cos(t)+ 1.004e-001* 1.338e-003*sin(t)), 3.614e-002 +2.000*(-1.004e-001* 1.006e-002*cos(t)+ 9.950e-001* 1.338e-003*sin(t)) not # Age 85, p23 - p13 set label "85" at 1.926e-001, 4.875e-002 center replot 1.926e-001+ 2.000*( 9.801e-001* 7.644e-003*cos(t)+ 1.985e-001* 2.219e-003*sin(t)), 4.875e-002 +2.000*(-1.985e-001* 7.644e-003*cos(t)+ 9.801e-001* 2.219e-003*sin(t)) not # Age 90, p23 - p13 set label "90" at 2.004e-001, 6.557e-002 center replot 2.004e-001+ 2.000*( 9.273e-001* 8.612e-003*cos(t)+ 3.743e-001* 4.351e-003*sin(t)), 6.557e-002 +2.000*(-3.743e-001* 8.612e-003*cos(t)+ 9.273e-001* 4.351e-003*sin(t)) not # Age 95, p23 - p13 set label "95" at 2.085e-001, 8.778e-002 center replot 2.085e-001+ 2.000*( 8.652e-001* 1.310e-002*cos(t)+ 5.014e-001* 8.033e-003*sin(t)), 8.778e-002 +2.000*(-5.014e-001* 1.310e-002*cos(t)+ 8.652e-001* 8.033e-003*sin(t)) not set out "biaspar/varpijgrbiaspar123-13.png";replot; set parametric;unset label set log y;set log x; set xlabel "p23 (year-1)";set ylabel "p21 (year-1)" set ter png small set size 0.65,0.65 set out "biaspar/varpijgrbiaspar123-21.png" set label "65" at 1.640e-001, 1.936e-001 center # Age 65, p23 - p21 plot [-pi:pi] 1.640e-001+ 2.000*( 3.032e-002* 3.151e-002*cos(t)+ 9.995e-001* 2.105e-002*sin(t)), 1.936e-001 +2.000*(-9.995e-001* 3.151e-002*cos(t)+ 3.032e-002* 2.105e-002*sin(t)) not # Age 70, p23 - p21 set label "70" at 1.708e-001, 1.734e-001 center replot 1.708e-001+ 2.000*( 4.964e-002* 2.161e-002*cos(t)+ 9.988e-001* 1.741e-002*sin(t)), 1.734e-001 +2.000*(-9.988e-001* 2.161e-002*cos(t)+ 4.964e-002* 1.741e-002*sin(t)) not # Age 75, p23 - p21 set label "75" at 1.778e-001, 1.552e-001 center replot 1.778e-001+ 2.000*( 5.539e-001* 1.385e-002*cos(t)+ 8.326e-001* 1.356e-002*sin(t)), 1.552e-001 +2.000*(-8.326e-001* 1.385e-002*cos(t)+ 5.539e-001* 1.356e-002*sin(t)) not # Age 80, p23 - p21 set label "80" at 1.851e-001, 1.389e-001 center replot 1.851e-001+ 2.000*( 9.977e-001* 1.002e-002*cos(t)+ 6.827e-002* 8.244e-003*sin(t)), 1.389e-001 +2.000*(-6.827e-002* 1.002e-002*cos(t)+ 9.977e-001* 8.244e-003*sin(t)) not # Age 85, p23 - p21 set label "85" at 1.926e-001, 1.243e-001 center replot 1.926e-001+ 2.000*( 9.865e-001* 7.536e-003*cos(t)+ 1.638e-001* 6.259e-003*sin(t)), 1.243e-001 +2.000*(-1.638e-001* 7.536e-003*cos(t)+ 9.865e-001* 6.259e-003*sin(t)) not # Age 90, p23 - p21 set label "90" at 2.004e-001, 1.112e-001 center replot 2.004e-001+ 2.000*( 8.440e-001* 8.341e-003*cos(t)+ 5.363e-001* 7.658e-003*sin(t)), 1.112e-001 +2.000*(-5.363e-001* 8.341e-003*cos(t)+ 8.440e-001* 7.658e-003*sin(t)) not # Age 95, p23 - p21 set label "95" at 2.085e-001, 9.953e-002 center replot 2.085e-001+ 2.000*( 9.795e-001* 1.210e-002*cos(t)+ 2.015e-001* 1.028e-002*sin(t)), 9.953e-002 +2.000*(-2.015e-001* 1.210e-002*cos(t)+ 9.795e-001* 1.028e-002*sin(t)) not set out "biaspar/varpijgrbiaspar123-21.png";replot; # Routine varevsij set noparametric;set nolabel; set ter png small;set size 0.65, 0.65 set log y; set nolog x;set xlabel "Age"; set ylabel "Force of mortality (year-1)"; plot "biaspar/prmorprev1-stablbased-rbiaspar.txt" u 1:($3) not w l 1 replot "biaspar/prmorprev1-stablbased-rbiaspar.txt" u 1:(($3+1.96*$4)) t "95% interval" w l 2 replot "biaspar/prmorprev1-stablbased-rbiaspar.txt" u 1:(($3-1.96*$4)) not w l 2 set out "biaspar/varmuptjgr-stablbased-biaspar1.png";replot;