imach/html/doc/biaspar.gp - view

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Revision 1.7: download - view: text, annotated - select for diffs
Tue Mar 15 18:43:13 2022 UTC (2 years, 3 months ago) by brouard
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CVS tags: HEAD

Summary: IMaCh-0.99r24

1: 2: # IMaCh-0.99r24 3: # biaspar.gp 4: set datafile missing 'NaNq' 5: cd "/Users/nbrouard/Documents/imach/cvs/imach/html/doc" 6: 7: #Diagram of the model 8: 9: delta=0.03;delta2=0.07;unset arrow; 10: yoff=(2 > 2? 0:1); 11: 12: #Peripheral arrows 13: set for [i=1:2] for [j=1:2] arrow i*10+j from cos(pi*((1-(2/2)*2./2)/2+(i-1)*2./2))-(i!=j?(i-j)/abs(i-j)*delta:0), yoff +sin(pi*((1-(2/2)*2./2)/2+(i-1)*2./2)) + (i!=j?(i-j)/abs(i-j)*delta:0) rto -0.95*(cos(pi*((1-(2/2)*2./2)/2+(i-1)*2./2))+(i!=j?(i-j)/abs(i-j)*delta:0) - cos(pi*((1-(2/2)*2./2)/2+(j-1)*2./2)) + (i!=j?(i-j)/abs(i-j)*delta2:0)), -0.95*(sin(pi*((1-(2/2)*2./2)/2+(i-1)*2./2)) + (i!=j?(i-j)/abs(i-j)*delta:0) - sin(pi*((1-(2/2)*2./2)/2+(j-1)*2./2))+( i!=j?(i-j)/abs(i-j)*delta2:0)) ls (i < j? 1:2) 14: 15: #Centripete arrows (turning in other direction (1-i) instead of (i-1)) 16: set for [i=1:2] arrow (2+1)*10+i from cos(pi*((1-(2/2)*2./2)/2+(1-i)*2./2))-(i!=j?(i-j)/abs(i-j)*delta:0), yoff +sin(pi*((1-(2/2)*2./2)/2+(1-i)*2./2)) + (i!=j?(i-j)/abs(i-j)*delta:0) rto -0.80*(cos(pi*((1-(2/2)*2./2)/2+(1-i)*2./2))+(i!=j?(i-j)/abs(i-j)*delta:0) ), -0.80*(sin(pi*((1-(2/2)*2./2)/2+(1-i)*2./2)) + (i!=j?(i-j)/abs(i-j)*delta:0) + yoff ) ls 4 17: 18: #show arrow 19: unset label 20: 21: #States labels, starting from 2 (2-i) instead of (1-i), was (i-1) 22: set for [i=1:2] label i sprintf("State %d",i) center at cos(pi*((1-(2/2)*2./2)/2+(2-i)*2./2)), yoff+sin(pi*((1-(2/2)*2./2)/2+(2-i)*2./2)) font "helvetica, 16" tc rgbcolor "blue" 23: 24: set label 2+1 sprintf("State %d",2+1) center at 0.,0. font "helvetica, 16" tc rgbcolor "red" 25: 26: #show label 27: unset border;unset xtics; unset ytics; 28: 29: 30: set ter svg size 640, 480;set out "biaspar/D_biaspar_.svg" 31: unset log y; plot [-1.2:1.2][yoff-1.2:1.2] 1/0 not; set out;reset; 32: 33: # Contributions to the Likelihood, mle >=1. For mle=4 no interpolation, pure matrix products. 34: # 35: 36: set log y; unset log x;set xlabel "Age"; set ylabel "Likelihood (-2Log(L))"; 37: set ter pngcairo size 640, 480 38: set out "biaspar/ILK_biaspar-dest.png"; 39: set log y;plot "biaspar/ILK_biaspar.txt" u 2:(-$13):6 t "All sample, transitions colored by destination" with dots lc variable; set out; 40: 41: set out "biaspar/ILK_biaspar-ori.png"; 42: set log y;plot "biaspar/ILK_biaspar.txt" u 2:(-$13):5 t "All sample, transitions colored by origin" with dots lc variable; set out; 43: 44: 45: set out "biaspar/ILK_biaspar-p1j.png";set ylabel "Probability for each individual/wave";unset log; 46: # plot weighted, mean weight should have point size of 0.5 47: plot "biaspar/ILK_biaspar.txt" u 2:($5 == 1 && $6==1 ? $10 : 1/0):($12/4.):6 t "p11" with points pointtype 7 ps variable lc variable \ 48: ,\ 49: "" u 2:($5 == 1 && $6==2 ? $10 : 1/0):($12/4.):6 t "p12" with points pointtype 7 ps variable lc variable ,\ 50: "" u 2:($5 == 1 && $6==3 ? $10 : 1/0):($12/4.):6 t "p13" with points pointtype 7 ps variable lc variable ; 51: set out; unset ylabel; 52: 53: set out "biaspar/ILK_biaspar-p2j.png";set ylabel "Probability for each individual/wave";unset log; 54: # plot weighted, mean weight should have point size of 0.5 55: plot "biaspar/ILK_biaspar.txt" u 2:($5 == 2 && $6==1 ? $10 : 1/0):($12/4.):6 t "p21" with points pointtype 7 ps variable lc variable \ 56: ,\ 57: "" u 2:($5 == 2 && $6==2 ? $10 : 1/0):($12/4.):6 t "p22" with points pointtype 7 ps variable lc variable ,\ 58: "" u 2:($5 == 2 && $6==3 ? $10 : 1/0):($12/4.):6 t "p23" with points pointtype 7 ps variable lc variable ; 59: set out; unset ylabel; 60: 61: set out;unset log 62: 63: # 1st: Forward (stable period) prevalence with CI: 'VPL_' files and live state =1 64: # 65: 66: set out "biaspar/V_biaspar_1-1-1.svg" 67: 68: #set out "V_biaspar_1-1-1.svg" 69: set title "Alive state 1 ()" font "Helvetica,12" 70: set xlabel "Age" 71: set ylabel "Probability" 72: set ter svg size 640, 480 73: plot [70:95] "biaspar/VPL_biaspar.txt" every :::0::0 u 1:($2==1 ? $3:1/0) "%lf %lf %lf (%lf) %*lf (%*lf)" t"Forward prevalence" w l lt 0,"biaspar/VPL_biaspar.txt" every :::0::0 u 1:($2==1 ? $3+1.96*$4 : 1/0) "%lf %lf %lf (%lf) %*lf (%*lf)" t"95% CI" w l lt 1,"biaspar/VPL_biaspar.txt" every :::0::0 u 1:($2==1 ? $3-1.96*$4 : 1/0) "%lf %lf %lf (%lf) %*lf (%*lf)" t"" w l lt 1,"biaspar/P_biaspar.txt" u 1:(($2)) t 'Observed prevalence in state 1' with line lt 3 74: set out ;unset title; 75: 76: # 1st: Forward (stable period) prevalence with CI: 'VPL_' files and live state =2 77: # 78: 79: set out "biaspar/V_biaspar_2-1-1.svg" 80: 81: #set out "V_biaspar_2-1-1.svg" 82: set title "Alive state 2 ()" font "Helvetica,12" 83: set xlabel "Age" 84: set ylabel "Probability" 85: set ter svg size 640, 480 86: plot [70:95] "biaspar/VPL_biaspar.txt" every :::0::0 u 1:($2==1 ? $3:1/0) "%lf %lf %*lf (%*lf) %lf (%lf)" t"Forward prevalence" w l lt 0,"biaspar/VPL_biaspar.txt" every :::0::0 u 1:($2==1 ? $3+1.96*$4 : 1/0) "%lf %lf %*lf (%*lf) %lf (%lf)" t"95% CI" w l lt 1,"biaspar/VPL_biaspar.txt" every :::0::0 u 1:($2==1 ? $3-1.96*$4 : 1/0) "%lf %lf %*lf (%*lf) %lf (%lf)" t"" w l lt 1,"biaspar/P_biaspar.txt" u 1:(($5)) t 'Observed prevalence in state 2' with line lt 3 87: set out ;unset title; 88: 89: # 2nd: Total life expectancy with CI: 't' files 90: # 91: 92: set out "biaspar/E_biaspar_1-1.svg" 93: 94: set label "popbased 0 ()" at graph 0.98,0.5 center rotate font "Helvetica,12" 95: set ylabel "Years" 96: set ter svg size 640, 480 97: plot [70:95] "biaspar/T_biaspar.txt" every :::0::0 u 1:($2==0 && $4!=0 ?$4 : 1/0) "%lf %lf %lf %lf (%lf) %*lf (%*lf) %*lf (%*lf)" t"TLE" w l lt 1, \ 98: "biaspar/T_biaspar.txt" every :::0::0 u 1:($2==0 && $4!=0 ? $4-$5*2 : 1/0) "%lf %lf %lf %lf (%lf) %*lf (%*lf) %*lf (%*lf)" t"" w l lt 0,"biaspar/T_biaspar.txt" every :::0::0 u 1:($2==0 && $4!=0 ? $4+$5*2 : 1/0) "%lf %lf %lf %lf (%lf) %*lf (%*lf) %*lf (%*lf)" t"" w l lt 0,\ 99: "biaspar/T_biaspar.txt" every :::0::0 u 1:($2==0 && $4!=0 ?$4 : 1/0) "%lf %lf %lf %*lf (%*lf) %lf (%lf) %*lf (%*lf)" t"LE in state (1)" w l lt 3, \ 100: "biaspar/T_biaspar.txt" every :::0::0 u 1:($2==0 && $4!=0 ? $4-$5*2 : 1/0) "%lf %lf %lf %*lf (%*lf) %lf (%lf) %*lf (%*lf)" t"" w l lt 0,"biaspar/T_biaspar.txt" every :::0::0 u 1:($2==0 && $4!=0 ? $4+$5*2 : 1/0) "%lf %lf %lf %*lf (%*lf) %lf (%lf) %*lf (%*lf)" t"" w l lt 0,\ 101: "biaspar/T_biaspar.txt" every :::0::0 u 1:($2==0 && $4!=0 ?$4 : 1/0) "%lf %lf %lf %*lf (%*lf) %*lf (%*lf) %lf (%lf)" t"LE in state (2)" w l lt 4, \ 102: "biaspar/T_biaspar.txt" every :::0::0 u 1:($2==0 && $4!=0 ? $4-$5*2 : 1/0) "%lf %lf %lf %*lf (%*lf) %*lf (%*lf) %lf (%lf)" t"" w l lt 0,"biaspar/T_biaspar.txt" every :::0::0 u 1:($2==0 && $4!=0 ? $4+$5*2 : 1/0) "%lf %lf %lf %*lf (%*lf) %*lf (%*lf) %lf (%lf)" t"" w l lt 0 103: set label "popbased 1 ()" at graph 0.98,0.5 center rotate font "Helvetica,12" 104: 105: replot "biaspar/T_biaspar.txt" every :::0::0 u 1:($2==1 && $4!=0 ?$4 : 1/0) "%lf %lf %lf %lf (%lf) %*lf (%*lf) %*lf (%*lf)" t"TLE" w l lt 1, \ 106: "biaspar/T_biaspar.txt" every :::0::0 u 1:($2==1 && $4!=0 ? $4-$5*2 : 1/0) "%lf %lf %lf %lf (%lf) %*lf (%*lf) %*lf (%*lf)" t"" w l lt 0,"biaspar/T_biaspar.txt" every :::0::0 u 1:($2==1 && $4!=0 ? $4+$5*2 : 1/0) "%lf %lf %lf %lf (%lf) %*lf (%*lf) %*lf (%*lf)" t"" w l lt 0,\ 107: "biaspar/T_biaspar.txt" every :::0::0 u 1:($2==1 && $4!=0 ?$4 : 1/0) "%lf %lf %lf %*lf (%*lf) %lf (%lf) %*lf (%*lf)" t"LE in state (1)" w l lt 3, \ 108: "biaspar/T_biaspar.txt" every :::0::0 u 1:($2==1 && $4!=0 ? $4-$5*2 : 1/0) "%lf %lf %lf %*lf (%*lf) %lf (%lf) %*lf (%*lf)" t"" w l lt 0,"biaspar/T_biaspar.txt" every :::0::0 u 1:($2==1 && $4!=0 ? $4+$5*2 : 1/0) "%lf %lf %lf %*lf (%*lf) %lf (%lf) %*lf (%*lf)" t"" w l lt 0,\ 109: "biaspar/T_biaspar.txt" every :::0::0 u 1:($2==1 && $4!=0 ?$4 : 1/0) "%lf %lf %lf %*lf (%*lf) %*lf (%*lf) %lf (%lf)" t"LE in state (2)" w l lt 4, \ 110: "biaspar/T_biaspar.txt" every :::0::0 u 1:($2==1 && $4!=0 ? $4-$5*2 : 1/0) "%lf %lf %lf %*lf (%*lf) %*lf (%*lf) %lf (%lf)" t"" w l lt 0,"biaspar/T_biaspar.txt" every :::0::0 u 1:($2==1 && $4!=0 ? $4+$5*2 : 1/0) "%lf %lf %lf %*lf (%*lf) %*lf (%*lf) %lf (%lf)" t"" w l lt 0 111: set out;set out "biaspar/E_biaspar_1-1.svg"; replot; set out; unset label; 112: 113: 114: # 3d: Life expectancy with EXP_ files: combination=1 state=1 115: # 116: 117: set out "biaspar/EXP_biaspar_1-1-1.svg" 118: set label "()" at graph 0.98,0.5 center rotate font "Helvetica,12" 119: set ter svg size 640, 480 120: plot [70:95] "biaspar/E_biaspar.txt" every :::0::0 u 1:2 t "e11" w l ,"biaspar/E_biaspar.txt" every :::0::0 u 1:3 t "e12" w l ,"biaspar/E_biaspar.txt" every :::0::0 u 1:4 t "e1." w l 121: 122: # 3d: Life expectancy with EXP_ files: combination=1 state=2 123: # 124: 125: set out "biaspar/EXP_biaspar_2-1-1.svg" 126: set label "()" at graph 0.98,0.5 center rotate font "Helvetica,12" 127: set ter svg size 640, 480 128: plot [70:95] "biaspar/E_biaspar.txt" every :::0::0 u 1:5 t "e21" w l ,"biaspar/E_biaspar.txt" every :::0::0 u 1:6 t "e22" w l ,"biaspar/E_biaspar.txt" every :::0::0 u 1:7 t "e2." w l 129: unset label; 130: 131: # 132: # 133: # Survival functions in state j : 'LIJ_' files, cov=1 state=1 134: # 135: 136: set out "biaspar/LIJ_biaspar_1-1-1.svg" 137: set label "Alive state 1 ()" at graph 0.98,0.5 center rotate font "Helvetica,12" 138: set xlabel "Age" 139: set ylabel "Probability to be alive" 140: set ter svg size 640, 480 141: unset log y 142: plot [70:95] "biaspar/PIJ_biaspar.txt" u ($1==1 ? ($3):1/0):($4/($4+$5+$6)) t "l(1,1)" w l, '' u ($1==1 ? ($3):1/0):($7/($7+$8+$9)) t "l(2,1)" w l 143: set out; unset label; 144: 145: # 146: # 147: # Survival functions in state j : 'LIJ_' files, cov=1 state=2 148: # 149: 150: set out "biaspar/LIJ_biaspar_2-1-1.svg" 151: set label "Alive state 2 ()" at graph 0.98,0.5 center rotate font "Helvetica,12" 152: set xlabel "Age" 153: set ylabel "Probability to be alive" 154: set ter svg size 640, 480 155: unset log y 156: plot [70:95] "biaspar/PIJ_biaspar.txt" u ($1==1 ? ($3):1/0):($5/($4+$5+$6)) t "l(1,2)" w l, '' u ($1==1 ? ($3):1/0):($8/($7+$8+$9)) t "l(2,2)" w l 157: set out; unset label; 158: 159: # 160: # 161: # Survival functions in state j and all livestates from state i by final state j: 'lij' files, cov=1 state=1 162: # 163: 164: set out "biaspar/LIJT_biaspar_1-1-1.svg" 165: set label "Alive state 1 ()" at graph 0.98,0.5 center rotate font "Helvetica,12" 166: set xlabel "Age" 167: set ylabel "Probability to be alive" 168: set ter svg size 640, 480 169: unset log y 170: plot [70:95] "biaspar/PIJ_biaspar.txt" u (($1==1 && (floor($2)%5 == 0)) ? ($3):1/0):($4) t "l(1,1)" w l, '' u (($1==1 && (floor($2)%5 == 0)) ? ($3):1/0):($5) t "l(1,2)" w l, '' u (($1==1 && (floor($2)%5 == 0)) ? ($3):1/0):($4 +$5) t"l(1,.)" w l 171: set out; unset label; 172: 173: # 174: # 175: # Survival functions in state j and all livestates from state i by final state j: 'lij' files, cov=1 state=2 176: # 177: 178: set out "biaspar/LIJT_biaspar_2-1-1.svg" 179: set label "Alive state 2 ()" at graph 0.98,0.5 center rotate font "Helvetica,12" 180: set xlabel "Age" 181: set ylabel "Probability to be alive" 182: set ter svg size 640, 480 183: unset log y 184: plot [70:95] "biaspar/PIJ_biaspar.txt" u (($1==1 && (floor($2)%5 == 0)) ? ($3):1/0):($7) t "l(2,1)" w l, '' u (($1==1 && (floor($2)%5 == 0)) ? ($3):1/0):($8) t "l(2,2)" w l, '' u (($1==1 && (floor($2)%5 == 0)) ? ($3):1/0):($7 +$8) t"l(2,.)" w l 185: set out; unset label; 186: 187: # 188: # 189: #CV preval stable (forward): 'pij' files, covariatecombination#=1 state=1 190: # 191: 192: set out "biaspar/P_biaspar_1-1-1.svg" 193: set label "Alive state 1 ()" at graph 0.98,0.5 center rotate font "Helvetica,12" 194: set xlabel "Age" 195: set ylabel "Probability" 196: set ter svg size 640, 480 197: unset log y 198: plot [70:95] "biaspar/PIJ_biaspar.txt" u ($1==1 ? ($3):1/0):($4/($4+$5)) t "prev(1,1)" w l, '' u ($1==1 ? ($3):1/0):($7/($7+$8)) t "prev(2,1)" w l 199: set out; unset label; 200: 201: # 202: # 203: #CV preval stable (forward): 'pij' files, covariatecombination#=1 state=2 204: # 205: 206: set out "biaspar/P_biaspar_2-1-1.svg" 207: set label "Alive state 2 ()" at graph 0.98,0.5 center rotate font "Helvetica,12" 208: set xlabel "Age" 209: set ylabel "Probability" 210: set ter svg size 640, 480 211: unset log y 212: plot [70:95] "biaspar/PIJ_biaspar.txt" u ($1==1 ? ($3):1/0):($5/($4+$5)) t "prev(1,2)" w l, '' u ($1==1 ? ($3):1/0):($8/($7+$8)) t "prev(2,2)" w l 213: set out; unset label; 214: 215: # 216: # 217: #Projection of prevalence to forward stable prevalence (period): 'PROJ_' files, covariatecombination#=1 state=1 218: # 219: # hpijx=probability over h years, hp.jx is weighted by observed prev 220: 221: set out "biaspar/PROJ_biaspar_1-1-1.svg" 222: set label "Alive state 1 ()" at graph 0.98,0.5 center rotate font "Helvetica,12" 223: set xlabel "Age" 224: set ylabel "Prevalence" 225: set ter svg size 640, 480 226: unset log y 227: plot [70:95] "biaspar/F_biaspar.txt" u 2:( $5/(1.-$11)):1 t 'pw.1' with line lc variable ,\ 228: '' u 2:( (($1-$2) == 1919 ) ? $5/(1.-$11) : 1/0):1 with labels center not 229: set out; unset label; 230: 231: # 232: # 233: #Projection of prevalence to forward stable prevalence (period): 'PROJ_' files, covariatecombination#=1 state=2 234: # 235: # hpijx=probability over h years, hp.jx is weighted by observed prev 236: 237: set out "biaspar/PROJ_biaspar_2-1-1.svg" 238: set label "Alive state 2 ()" at graph 0.98,0.5 center rotate font "Helvetica,12" 239: set xlabel "Age" 240: set ylabel "Prevalence" 241: set ter svg size 640, 480 242: unset log y 243: plot [70:95] "biaspar/F_biaspar.txt" u 2:( $8/(1.-$11)):1 t 'pw.2' with line lc variable ,\ 244: '' u 2:( (($1-$2) == 1919 ) ? $8/(1.-$11) : 1/0):1 with labels center not 245: set out; unset label; 246: 247: ############## 248: #9eme MLE estimated parameters 249: ############# 250: # initial state 1 251: # current state 2 252: p1=-12.317578; p2=0.093112; 253: # current state 3 254: p3=-10.163170; p4=0.054838; 255: # initial state 2 256: # current state 1 257: p5=-1.668569; p6=-0.033906; 258: # current state 3 259: p7=-5.686920; p8=0.018135; 260: ############## 261: # 262: 263: ############## 264: #10eme Graphics of probabilities or incidences 265: ############# 266: # logi(p12/p11)=a12+b12*age+c12age*age+d12*V1+e12*V1*age 267: # logi(p12/p11)=p1 +p2*age +p3*age*age+ p4*V1+ p5*V1*age 268: # logi(p13/p11)=a13+b13*age+c13age*age+d13*V1+e13*V1*age 269: # logi(p13/p11)=p6 +p7*age +p8*age*age+ p9*V1+ p10*V1*age 270: # p12+p13+p14+p11=1=p11(1+exp(a12+b12*age+c12age*age+d12*V1+e12*V1*age) 271: # +exp(a13+b13*age+c13age*age+d13*V1+e13*V1*age)+...) 272: # p11=1/(1+exp(a12+b12*age+c12age*age+d12*V1+e12*V1*age) 273: # +exp(a13+b13*age+c13age*age+d13*V1+e13*V1*age)+...) 274: # p12=exp(a12+b12*age+c12age*age+d12*V1+e12*V1*age)/ 275: # (1+exp(a12+b12*age+c12age*age+d12*V1+e12*V1*age) 276: # +exp(a13+b13*age+c13age*age+d13*V1+e13*V1*age)) 277: # +exp(a14+b14*age+c14age*age+d14*V1+e14*V1*age)+...) 278: # 279: #Number of graphics: first is logit, 2nd is probabilities, third is incidences per year 280: #model= 281: # Type of graphic ng=1 282: # k1=1 to 2^0=1 283: 284: 285: # Combination of dummy k1=1 which is 286: # 287: 288: set out "biaspar/PE_biaspar_1-1-1.svg" 289: set key outside 290: set title "()" font "Helvetica,12" 291: 292: set ter svg size 640, 480 293: set ylabel "Value of the logit of the model" 294: 295: unset log y 296: plot [70:95] p1+p2*x w l lw 2 lt (3*1+2)%3+1 dt 1 t "logit(p12)" , p3+p4*x w l lw 2 lt (3*1+3)%3+1 dt 1 t "logit(p13)" , p5+p6*x w l lw 2 lt (3*2+1)%3+1 dt 2 t "logit(p21)" , p7+p8*x w l lw 2 lt (3*2+3)%3+1 dt 2 t "logit(p23)" 297: set out; unset title;set key default; 298: #Number of graphics: first is logit, 2nd is probabilities, third is incidences per year 299: #model= 300: # Type of graphic ng=2 301: # k1=1 to 2^0=1 302: 303: 304: # Combination of dummy k1=1 which is 305: # 306: 307: set out "biaspar/PE_biaspar_1-2-1.svg" 308: set key outside 309: set title "()" font "Helvetica,12" 310: 311: set ter svg size 640, 480 312: set ylabel "Probability" 313: 314: set log y 315: plot [70:95] (1.)/(1+exp(p1+p2*x)+exp(p3+p4*x)) w l lw 2 lt (3*1+1)%3+1 dt 1 t "p11" , exp(p1+p2*x)/(1+exp(p1+p2*x)+exp(p3+p4*x)) w l lw 2 lt (3*1+2)%3+1 dt 1 t "p12" , exp(p3+p4*x)/(1+exp(p1+p2*x)+exp(p3+p4*x)) w l lw 2 lt (3*1+3)%3+1 dt 1 t "p13" , exp(p5+p6*x)/(1+exp(p5+p6*x)+exp(p7+p8*x)) w l lw 2 lt (3*2+1)%3+1 dt 2 t "p21" , (1.)/(1+exp(p5+p6*x)+exp(p7+p8*x)) w l lw 2 lt (3*2+2)%3+1 dt 2 t "p22" , exp(p7+p8*x)/(1+exp(p5+p6*x)+exp(p7+p8*x)) w l lw 2 lt (3*2+3)%3+1 dt 2 t "p23" 316: set out; unset title;set key default; 317: #Number of graphics: first is logit, 2nd is probabilities, third is incidences per year 318: #model= 319: # Type of graphic ng=3 320: # k1=1 to 2^0=1 321: 322: 323: # Combination of dummy k1=1 which is 324: # 325: 326: set out "biaspar/PE_biaspar_1-3-1.svg" 327: set key outside 328: set title "()" font "Helvetica,12" 329: 330: set ter svg size 640, 480 331: set ylabel "Quasi-incidence per year" 332: 333: set log y 334: plot [70:95] (1.)/(1+exp(p1+p2*x)+exp(p3+p4*x)) w l lw 2 lt (3*1+1)%3+1 dt 1 t "i11" , 12.000000*exp(p1+p2*x)/(1+exp(p1+p2*x)+exp(p3+p4*x)) w l lw 2 lt (3*1+2)%3+1 dt 1 t "i12" , 12.000000*exp(p3+p4*x)/(1+exp(p1+p2*x)+exp(p3+p4*x)) w l lw 2 lt (3*1+3)%3+1 dt 1 t "i13" , 12.000000*exp(p5+p6*x)/(1+exp(p5+p6*x)+exp(p7+p8*x)) w l lw 2 lt (3*2+1)%3+1 dt 2 t "i21" , (1.)/(1+exp(p5+p6*x)+exp(p7+p8*x)) w l lw 2 lt (3*2+2)%3+1 dt 2 t "i22" , 12.000000*exp(p7+p8*x)/(1+exp(p5+p6*x)+exp(p7+p8*x)) w l lw 2 lt (3*2+3)%3+1 dt 2 t "i23" 335: set out; unset title;set key default; 336: 337: # Routine varprob 338: # Ellipsoids of confidence 339: # 340: 341: set parametric;unset label 342: set log y;set log x; set xlabel "p13 (year-1)";set ylabel "p12 (year-1)" 343: set ter svg size 640, 480 344: set out "biaspar/VARPIJGR_biaspar_113-12.svg" 345: set label "70" at 2.140e-02, 3.617e-02 center 346: # Age 70, p13 - p12 347: plot [-pi:pi] 2.140e-02+ 2.000*( 5.514e-01* 2.264e-03*cos(t)+ 8.342e-01* 1.523e-03*sin(t)), 3.617e-02 +2.000*( -8.342e-01* 2.264e-03*cos(t)+ 5.514e-01* 1.523e-03*sin(t)) not 348: # Age 75, p13 - p12 349: set label "75" at 2.808e-02, 5.747e-02 center 350: replot 2.808e-02+ 2.000*( 3.943e-01* 2.448e-03*cos(t)+ 9.190e-01* 1.398e-03*sin(t)), 5.747e-02 +2.000*( -9.190e-01* 2.448e-03*cos(t)+ 3.943e-01* 1.398e-03*sin(t)) not 351: # Age 80, p13 - p12 352: set label "80" at 3.681e-02, 9.123e-02 center 353: replot 3.681e-02+ 2.000*( 3.741e-01* 2.676e-03*cos(t)+ 9.274e-01* 1.373e-03*sin(t)), 9.123e-02 +2.000*( -9.274e-01* 2.676e-03*cos(t)+ 3.741e-01* 1.373e-03*sin(t)) not 354: # Age 85, p13 - p12 355: set label "85" at 4.816e-02, 1.445e-01 center 356: replot 4.816e-02+ 2.000*( 3.906e-01* 4.057e-03*cos(t)+ 9.206e-01* 2.238e-03*sin(t)), 1.445e-01 +2.000*( -9.206e-01* 4.057e-03*cos(t)+ 3.906e-01* 2.238e-03*sin(t)) not 357: # Age 90, p13 - p12 358: set label "90" at 6.283e-02, 2.283e-01 center 359: replot 6.283e-02+ 2.000*( 2.754e-01* 8.795e-03*cos(t)+ 9.613e-01* 4.488e-03*sin(t)), 2.283e-01 +2.000*( -9.613e-01* 8.795e-03*cos(t)+ 2.754e-01* 4.488e-03*sin(t)) not 360: # Age 95, p13 - p12 361: set label "95" at 8.159e-02, 3.590e-01 center 362: replot 8.159e-02+ 2.000*( 1.909e-01* 1.934e-02*cos(t)+ 9.816e-01* 8.213e-03*sin(t)), 3.590e-01 +2.000*( -9.816e-01* 1.934e-02*cos(t)+ 1.909e-01* 8.213e-03*sin(t)) not 363: set out; 364: set out "biaspar/VARPIJGR_biaspar_113-12.svg";replot;set out; 365: # Ellipsoids of confidence 366: # 367: 368: set parametric;unset label 369: set log y;set log x; set xlabel "p21 (year-1)";set ylabel "p12 (year-1)" 370: set ter svg size 640, 480 371: set out "biaspar/VARPIJGR_biaspar_121-12.svg" 372: set label "70" at 2.047e-01, 3.617e-02 center 373: # Age 70, p21 - p12 374: plot [-pi:pi] 2.047e-01+ 2.000*( 9.996e-01* 2.493e-02*cos(t)+ -2.854e-02* 1.942e-03*sin(t)), 3.617e-02 +2.000*( 2.854e-02* 2.493e-02*cos(t)+ 9.996e-01* 1.942e-03*sin(t)) not 375: # Age 75, p21 - p12 376: set label "75" at 1.730e-01, 5.747e-02 center 377: replot 1.730e-01+ 2.000*( 9.986e-01* 1.494e-02*cos(t)+ -5.266e-02* 2.181e-03*sin(t)), 5.747e-02 +2.000*( 5.266e-02* 1.494e-02*cos(t)+ 9.986e-01* 2.181e-03*sin(t)) not 378: # Age 80, p21 - p12 379: set label "80" at 1.462e-01, 9.123e-02 center 380: replot 1.462e-01+ 2.000*( 9.951e-01* 8.486e-03*cos(t)+ -9.892e-02* 2.403e-03*sin(t)), 9.123e-02 +2.000*( 9.892e-02* 8.486e-03*cos(t)+ 9.951e-01* 2.403e-03*sin(t)) not 381: # Age 85, p21 - p12 382: set label "85" at 1.235e-01, 1.445e-01 center 383: replot 1.235e-01+ 2.000*( 9.684e-01* 6.423e-03*cos(t)+ -2.493e-01* 3.599e-03*sin(t)), 1.445e-01 +2.000*( 2.493e-01* 6.423e-03*cos(t)+ 9.684e-01* 3.599e-03*sin(t)) not 384: # Age 90, p21 - p12 385: set label "90" at 1.042e-01, 2.283e-01 center 386: replot 1.042e-01+ 2.000*( 5.573e-01* 9.289e-03*cos(t)+ -8.303e-01* 6.600e-03*sin(t)), 2.283e-01 +2.000*( 8.303e-01* 9.289e-03*cos(t)+ 5.573e-01* 6.600e-03*sin(t)) not 387: # Age 95, p21 - p12 388: set label "95" at 8.796e-02, 3.590e-01 center 389: replot 8.796e-02+ 2.000*( 1.959e-01* 1.934e-02*cos(t)+ -9.806e-01* 8.711e-03*sin(t)), 3.590e-01 +2.000*( 9.806e-01* 1.934e-02*cos(t)+ 1.959e-01* 8.711e-03*sin(t)) not 390: set out; 391: set out "biaspar/VARPIJGR_biaspar_121-12.svg";replot;set out; 392: # Ellipsoids of confidence 393: # 394: 395: set parametric;unset label 396: set log y;set log x; set xlabel "p23 (year-1)";set ylabel "p12 (year-1)" 397: set ter svg size 640, 480 398: set out "biaspar/VARPIJGR_biaspar_123-12.svg" 399: set label "70" at 1.406e-01, 3.617e-02 center 400: # Age 70, p23 - p12 401: plot [-pi:pi] 1.406e-01+ 2.000*( 9.987e-01* 1.493e-02*cos(t)+ -5.178e-02* 1.920e-03*sin(t)), 3.617e-02 +2.000*( 5.178e-02* 1.493e-02*cos(t)+ 9.987e-01* 1.920e-03*sin(t)) not 402: # Age 75, p23 - p12 403: set label "75" at 1.542e-01, 5.747e-02 center 404: replot 1.542e-01+ 2.000*( 9.970e-01* 1.241e-02*cos(t)+ -7.775e-02* 2.112e-03*sin(t)), 5.747e-02 +2.000*( 7.775e-02* 1.241e-02*cos(t)+ 9.970e-01* 2.112e-03*sin(t)) not 405: # Age 80, p23 - p12 406: set label "80" at 1.690e-01, 9.123e-02 center 407: replot 1.690e-01+ 2.000*( 9.927e-01* 9.663e-03*cos(t)+ -1.210e-01* 2.265e-03*sin(t)), 9.123e-02 +2.000*( 1.210e-01* 9.663e-03*cos(t)+ 9.927e-01* 2.265e-03*sin(t)) not 408: # Age 85, p23 - p12 409: set label "85" at 1.851e-01, 1.445e-01 center 410: replot 1.851e-01+ 2.000*( 9.733e-01* 7.552e-03*cos(t)+ -2.295e-01* 3.515e-03*sin(t)), 1.445e-01 +2.000*( 2.295e-01* 7.552e-03*cos(t)+ 9.733e-01* 3.515e-03*sin(t)) not 411: # Age 90, p23 - p12 412: set label "90" at 2.028e-01, 2.283e-01 center 413: replot 2.028e-01+ 2.000*( 6.011e-01* 9.259e-03*cos(t)+ -7.992e-01* 7.110e-03*sin(t)), 2.283e-01 +2.000*( 7.992e-01* 9.259e-03*cos(t)+ 6.011e-01* 7.110e-03*sin(t)) not 414: # Age 95, p23 - p12 415: set label "95" at 2.219e-01, 3.590e-01 center 416: replot 2.219e-01+ 2.000*( 2.273e-01* 1.937e-02*cos(t)+ -9.738e-01* 1.173e-02*sin(t)), 3.590e-01 +2.000*( 9.738e-01* 1.937e-02*cos(t)+ 2.273e-01* 1.173e-02*sin(t)) not 417: set out; 418: set out "biaspar/VARPIJGR_biaspar_123-12.svg";replot;set out; 419: # Ellipsoids of confidence 420: # 421: 422: set parametric;unset label 423: set log y;set log x; set xlabel "p21 (year-1)";set ylabel "p13 (year-1)" 424: set ter svg size 640, 480 425: set out "biaspar/VARPIJGR_biaspar_121-13.svg" 426: set label "70" at 2.047e-01, 2.140e-02 center 427: # Age 70, p21 - p13 428: plot [-pi:pi] 2.047e-01+ 2.000*( 1.000e+00* 2.492e-02*cos(t)+ -2.081e-03* 1.781e-03*sin(t)), 2.140e-02 +2.000*( 2.081e-03* 2.492e-02*cos(t)+ 1.000e+00* 1.781e-03*sin(t)) not 429: # Age 75, p21 - p13 430: set label "75" at 1.730e-01, 2.808e-02 center 431: replot 1.730e-01+ 2.000*( 1.000e+00* 1.492e-02*cos(t)+ -2.295e-03* 1.606e-03*sin(t)), 2.808e-02 +2.000*( 2.295e-03* 1.492e-02*cos(t)+ 1.000e+00* 1.606e-03*sin(t)) not 432: # Age 80, p21 - p13 433: set label "80" at 1.462e-01, 3.681e-02 center 434: replot 1.462e-01+ 2.000*( 1.000e+00* 8.448e-03*cos(t)+ -5.527e-03* 1.619e-03*sin(t)), 3.681e-02 +2.000*( 5.527e-03* 8.448e-03*cos(t)+ 1.000e+00* 1.619e-03*sin(t)) not 435: # Age 85, p21 - p13 436: set label "85" at 1.235e-01, 4.816e-02 center 437: replot 1.235e-01+ 2.000*( 9.994e-01* 6.288e-03*cos(t)+ -3.508e-02* 2.591e-03*sin(t)), 4.816e-02 +2.000*( 3.508e-02* 6.288e-03*cos(t)+ 9.994e-01* 2.591e-03*sin(t)) not 438: # Age 90, p21 - p13 439: set label "90" at 1.042e-01, 6.283e-02 center 440: replot 1.042e-01+ 2.000*( 9.956e-01* 7.558e-03*cos(t)+ -9.337e-02* 4.919e-03*sin(t)), 6.283e-02 +2.000*( 9.337e-02* 7.558e-03*cos(t)+ 9.956e-01* 4.919e-03*sin(t)) not 441: # Age 95, p21 - p13 442: set label "95" at 8.796e-02, 8.159e-02 center 443: replot 8.796e-02+ 2.000*( 8.858e-01* 9.520e-03*cos(t)+ -4.641e-01* 8.679e-03*sin(t)), 8.159e-02 +2.000*( 4.641e-01* 9.520e-03*cos(t)+ 8.858e-01* 8.679e-03*sin(t)) not 444: set out; 445: set out "biaspar/VARPIJGR_biaspar_121-13.svg";replot;set out; 446: # Ellipsoids of confidence 447: # 448: 449: set parametric;unset label 450: set log y;set log x; set xlabel "p23 (year-1)";set ylabel "p13 (year-1)" 451: set ter svg size 640, 480 452: set out "biaspar/VARPIJGR_biaspar_123-13.svg" 453: set label "70" at 1.406e-01, 2.140e-02 center 454: # Age 70, p23 - p13 455: plot [-pi:pi] 1.406e-01+ 2.000*( 9.985e-01* 1.494e-02*cos(t)+ 5.556e-02* 1.579e-03*sin(t)), 2.140e-02 +2.000*( -5.556e-02* 1.494e-02*cos(t)+ 9.985e-01* 1.579e-03*sin(t)) not 456: # Age 75, p23 - p13 457: set label "75" at 1.542e-01, 2.808e-02 center 458: replot 1.542e-01+ 2.000*( 9.976e-01* 1.240e-02*cos(t)+ 6.965e-02* 1.358e-03*sin(t)), 2.808e-02 +2.000*( -6.965e-02* 1.240e-02*cos(t)+ 9.976e-01* 1.358e-03*sin(t)) not 459: # Age 80, p23 - p13 460: set label "80" at 1.690e-01, 3.681e-02 center 461: replot 1.690e-01+ 2.000*( 9.951e-01* 9.643e-03*cos(t)+ 9.913e-02* 1.314e-03*sin(t)), 3.681e-02 +2.000*( -9.913e-02* 9.643e-03*cos(t)+ 9.951e-01* 1.314e-03*sin(t)) not 462: # Age 85, p23 - p13 463: set label "85" at 1.851e-01, 4.816e-02 center 464: replot 1.851e-01+ 2.000*( 9.815e-01* 7.522e-03*cos(t)+ 1.914e-01* 2.205e-03*sin(t)), 4.816e-02 +2.000*( -1.914e-01* 7.522e-03*cos(t)+ 9.815e-01* 2.205e-03*sin(t)) not 465: # Age 90, p23 - p13 466: set label "90" at 2.028e-01, 6.283e-02 center 467: replot 2.028e-01+ 2.000*( 9.340e-01* 8.361e-03*cos(t)+ 3.573e-01* 4.223e-03*sin(t)), 6.283e-02 +2.000*( -3.573e-01* 8.361e-03*cos(t)+ 9.340e-01* 4.223e-03*sin(t)) not 468: # Age 95, p23 - p13 469: set label "95" at 2.219e-01, 8.159e-02 center 470: replot 2.219e-01+ 2.000*( 9.094e-01* 1.298e-02*cos(t)+ 4.159e-01* 7.733e-03*sin(t)), 8.159e-02 +2.000*( -4.159e-01* 1.298e-02*cos(t)+ 9.094e-01* 7.733e-03*sin(t)) not 471: set out; 472: set out "biaspar/VARPIJGR_biaspar_123-13.svg";replot;set out; 473: # Ellipsoids of confidence 474: # 475: 476: set parametric;unset label 477: set log y;set log x; set xlabel "p23 (year-1)";set ylabel "p21 (year-1)" 478: set ter svg size 640, 480 479: set out "biaspar/VARPIJGR_biaspar_123-21.svg" 480: set label "70" at 1.406e-01, 2.047e-01 center 481: # Age 70, p23 - p21 482: plot [-pi:pi] 1.406e-01+ 2.000*( 3.099e-02* 2.492e-02*cos(t)+ 9.995e-01* 1.490e-02*sin(t)), 2.047e-01 +2.000*( -9.995e-01* 2.492e-02*cos(t)+ 3.099e-02* 1.490e-02*sin(t)) not 483: # Age 75, p23 - p21 484: set label "75" at 1.542e-01, 1.730e-01 center 485: replot 1.542e-01+ 2.000*( 8.468e-02* 1.494e-02*cos(t)+ 9.964e-01* 1.235e-02*sin(t)), 1.730e-01 +2.000*( -9.964e-01* 1.494e-02*cos(t)+ 8.468e-02* 1.235e-02*sin(t)) not 486: # Age 80, p23 - p21 487: set label "80" at 1.690e-01, 1.462e-01 center 488: replot 1.690e-01+ 2.000*( 9.896e-01* 9.619e-03*cos(t)+ 1.436e-01* 8.421e-03*sin(t)), 1.462e-01 +2.000*( -1.436e-01* 9.619e-03*cos(t)+ 9.896e-01* 8.421e-03*sin(t)) not 489: # Age 85, p23 - p21 490: set label "85" at 1.851e-01, 1.235e-01 center 491: replot 1.851e-01+ 2.000*( 9.870e-01* 7.423e-03*cos(t)+ 1.606e-01* 6.252e-03*sin(t)), 1.235e-01 +2.000*( -1.606e-01* 7.423e-03*cos(t)+ 9.870e-01* 6.252e-03*sin(t)) not 492: # Age 90, p23 - p21 493: set label "90" at 2.028e-01, 1.042e-01 center 494: replot 2.028e-01+ 2.000*( 9.136e-01* 8.053e-03*cos(t)+ 4.065e-01* 7.432e-03*sin(t)), 1.042e-01 +2.000*( -4.065e-01* 8.053e-03*cos(t)+ 9.136e-01* 7.432e-03*sin(t)) not 495: # Age 95, p23 - p21 496: set label "95" at 2.219e-01, 8.796e-02 center 497: replot 2.219e-01+ 2.000*( 9.960e-01* 1.226e-02*cos(t)+ 8.959e-02* 9.318e-03*sin(t)), 8.796e-02 +2.000*( -8.959e-02* 1.226e-02*cos(t)+ 9.960e-01* 9.318e-03*sin(t)) not 498: set out; 499: set out "biaspar/VARPIJGR_biaspar_123-21.svg";replot;set out; 500: # Routine varevsij 501: unset title 502: 503: unset parametric;unset label; set ter svg size 640, 480 504: set log y; unset log x;set xlabel "Age"; set ylabel "Force of mortality (year-1)"; 505: set out "biaspar/VARMUPTJGR--STABLBASED_biaspar1.svg"; 506: plot "biaspar/PRMORPREV-1-STABLBASED_biaspar.txt" u 1:($3) not w l lt 1 507: replot "biaspar/PRMORPREV-1-STABLBASED_biaspar.txt" u 1:(($3+1.96*$4)) t "95% interval" w l lt 2 508: replot "biaspar/PRMORPREV-1-STABLBASED_biaspar.txt" u 1:(($3-1.96*$4)) not w l lt 2 509: set out; 510: set out "biaspar/VARMUPTJGR--STABLBASED_biaspar1.svg";replot;set out; 511: 512: # Routine varevsij 513: unset title 514: 515: unset parametric;unset label; set ter svg size 640, 480 516: set log y; unset log x;set xlabel "Age"; set ylabel "Force of mortality (year-1)"; 517: set out "biaspar/VARMUPTJGR--POPULBASED-NOMOBIL_biaspar1.svg"; 518: plot "biaspar/PRMORPREV-1-POPULBASED-NOMOBIL_biaspar.txt" u 1:($3) not w l lt 1 519: replot "biaspar/PRMORPREV-1-POPULBASED-NOMOBIL_biaspar.txt" u 1:(($3+1.96*$4)) t "95% interval" w l lt 2 520: replot "biaspar/PRMORPREV-1-POPULBASED-NOMOBIL_biaspar.txt" u 1:(($3-1.96*$4)) not w l lt 2 521: set out; 522: set out "biaspar/VARMUPTJGR--POPULBASED-NOMOBIL_biaspar1.svg";replot;set out;