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 <h1 align="center"><font color="#00006A">Computing Health  <h1 align="center"><font color="#00006A">Computing Health
 Expectancies using IMaCh</font></h1>  Expectancies using IMaCh</font></h1>
 <h1 align="center"><font color="#00006A" size="5">(a Maximum  <h1 align="center"><font color="#00006A" size="5">(a Maximum
 Likelihood Computer Program using Interpolation of Markov Chains)</font></h1>  Likelihood Computer Program using Interpolation of Markov Chains)</font></h1>
   
 <p align="center"><a href="http://www.ined.fr/"><img  <p align="center"><a href="http://www.ined.fr/"><img
 src="doc/logo-ined.gif" border="0" width="151" height="76"></a><img  src="doc/logo-ined.gif" border="0" width="151" height="76"></a><img
 src="doc/euroreves2.gif" width="151" height="75"></p>  src="doc/euroreves2.gif" width="151" height="75"></p>
   
 <h3 align="center"><a href="http://www.ined.fr/"><font  <h3 align="center"><a href="http://www.ined.fr/"><font
 color="#00006A">INED</font></a><font color="#00006A"> and </font><a  color="#00006A">INED</font></a><font color="#00006A"> and </font><a
 href="http://euroreves.ined.fr"><font color="#00006A">EUROREVES</font></a></h3>  href="http://euroreves.ined.fr"><font color="#00006A">EUROREVES</font></a></h3>
   
 <p align="center"><font color="#00006A" size="4"><strong>March 2006</strong></font></p>  <p align="center"><font color="#00006A" size="4"><strong>August 2014</strong></font></p>
   
 <hr size="3" color="#EC5E5E">  <hr size="3" color="#EC5E5E">
   
 <h4 align="center"><font color="#00006A">Authors of the program: </font><a  <h4 align="center"><font color="#00006A">Authors of the program: </font><a
 href="http://sauvy.ined.fr/~brouard"><font color="#00006A">Nicolas  href="http://sauvy.ined.fr/~brouard"><font color="#00006A">Nicolas
 Brouard</font></a><font color="#00006A">, senior researcher at  Brouard</font></a><font color="#00006A">, senior researcher at
 the </font><a href="http://www.ined.fr"><font color="#00006A">Institut  the </font><a href="http://www.ined.fr"><font color="#00006A">Institut
 National d'Etudes Démographiques</font></a><font color="#00006A">  National d'Etudes Démographiques</font></a><font color="#00006A">
 (INED, Paris) in the "Mortality, Health and Epidemiology  (INED, Paris) in the "Mortality, Health and Epidemiology
 Research Unit" </font></h4>  Research Unit" </font></h4>
   
 <h4 align="center"><font color="#00006A">and Agnès Lièvre (PHD student at INED)</font></h4>  <h4 align="center"><font color="#00006A">and Agnès Lièvre (former PHD student at INED)</font></h4>
   
 <h4><font color="#00006A">Contribution to the mathematics: C. R.  <h4><font color="#00006A">Contribution to the mathematics: C. R.
 Heathcote </font><font color="#00006A" size="2">(Australian  Heathcote </font><font color="#00006A" size="2">(Australian
 National University, Canberra).</font></h4>  National University, Canberra).</font></h4>
   
 <h4><font color="#00006A">Contact: Agnès Lièvre (</font><a  <h4><font color="#00006A">Contact: Nicolas Brouard (</font><a
 href="mailto:lievre@ined.fr"><font color="#00006A"><i>lievre@ined.fr</i></font></a><font  href="mailto:brouard@ined.fr"><font color="#00006A"><i>brouard@ined.fr</i></font></a><font
 color="#00006A">) </font></h4>  color="#00006A">) </font></h4>
   
 <p> Main publication concerning the method is  <p> Main publication concerning the method is 
 <a href=http://taylorandfrancis.metapress.com/app/home/contribution.asp?wasp=1f99bwtvmk5yrb7hlhw3&referrer=parent&backto=issue,1,2;journal,2,5;linkingpublicationresults,1:300265,1  <a href=http://dx.doi.org/10.1080/713644739>Lièvre A., Brouard N. and Heathcote Ch. (2003) Estimating Health Expectancies 
 >Lièvre A., Brouard N. and Heathcote Ch. (2003) Estimating Health Expectancies  from Cross-longitudinal surveys. <em>Mathematical Population Studies</em>.- 10(4), pp. 211-248. DOI 10.1080/713644739</a>
 from Cross-longitudinal surveys. <em>Mathematical Population Studies</em>.- 10(4), pp. 211-248</a>  </p>
 </p>  
   <h2><font color="#EC5E5E"><strong>Download and instructions for installation</strong></font></h2>
 <h2><font color="#EC5E5E"><strong>Download and instructions for installation</strong></font></h2>  
   <h3> Current versions August 2014 </h3>
 <h3>On Windows (win9X, 2000, XP)</h3>  <ul>
 <p> Until June 2004 the installation did consist in a zip file which  <li>On Windows (win9X, 2000, XP, Vista, Windows 7, Windows 8): 0.98nV</li>
 had to be extracted in the directory of your choice. But with version  <li>On MacOS/X Leopard: 0.98nV</li>
 0.98d IMaCh we are using a windows installer (Inno setup).  Both  <li>On Linux, ask for the CVS version </li>
 executables <tt>imach.exe</tt> and <tt>gnuplot.exe</tt> (the grapher  </ul>
 that we are using) have to be on the same directory.  The grapher that IMaCh uses is gnuplot
   from <a href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>.
 <br> In order to facilitate the use of IMaCh we associated the .imach  Gnuplot has evolved since version IMaCh 0.98k and therefore you need
 extension to two features: editing and running. Thus by right clicking  at least Gnuplot 4.6. Otherwise you need to adapt the .gp file
 on a foo.imach file you can either 'edit'the file (default) with  produced in order to run with your old gnuplot.
 the notepad editor or 'run' it with gnuplot (you need a recent version).<br>  
   With the installer provided for OS/X and Windows, a recent gnuplot
       But we discovered that on some computers, people are not allowed  binary is provided and will be installed on the same directory that
       to modify the windows registry and need to have Administrator privileges.  the IMaCh binary.  It is better to use your own Gnuplot installation
   and IMaCh will test the command '''gnuplot''' but if the binary in not
      <br>  in your path, it will make a error but will use the binary provided by
       Thus we built two windows installer: a standard setup which will install  the installers. Using recent gnuplot installations, there is usually a
       the progam (usually in <tt>\Program Files\imach</tt> and will  possibility to add the gnuplot binary in your path.
       modify the registry to associate <tt>.imach</tt> extension to notepad and imach, and a  
       second which will not alter the registry. With this second installer you  <h3>On Windows (win9X, 2000, XP, Vista, Windows 7, Windows 8)</h3>
       will be able to install the programs in your home directory and  <p> Until June 2004 the installation did consist in a zip file which
       run it by clicking on the imach.exe icon. But you won't be able  had to be extracted in the directory of your choice. But with version
       to use the facility of the right clicking.  0.98d and above IMaCh we are using a windows installer (Inno setup).
 </p>  
   <br> In order to facilitate the use of IMaCh we associated the .imach
 <ul>  extension to two features: editing and running. Thus by right clicking
     <li>Download latest <font size="2" face="Courier New"><strong>imach-0.98i-1-setup.exe</strong></font>  on a foo.imach file you can either 'edit'the file (default) with
         and execute it .</li>  the notepad editor or 'run' it with gnuplot (you need a recent version).<br>
     <li>Different sub-directories are created:  
           <ul>        But we discovered that on some computers, people are not allowed
             <li>doc: most of the documentation. The main document        to modify the windows registry and need to have Administrator privileges.
                 is <a href="doc/imach.htm">doc/imach.htm</a> .</li>  
                 <ul> Here are also two data files:<font size="4"       <br>
                 face="Times New Roman"> </font><ul>        Thus we built two windows installer: a standard setup which will install
                     <li><font face="Courier New">data1.txt</font>        the progam (usually in <tt>\Program Files\imach</tt> and will
                         which is the main data file on which the        modify the registry to associate <tt>.imach</tt> extension to notepad and imach, and a
                         program has been run as the example in        second which will not alter the registry. With this second installer you
                         the main documentation.</li>        will be able to install the programs in your home directory and
                     <li><font face="Courier New">mydata.txt </font>a        run it by clicking on the imach.exe icon. But you won't be able
                         smaller data file which you can use for        to use the facility of the right clicking.
                         your own trial.</li>  </p>
                 </ul>  
                </ul>  <ul>
             <li>bin: <ul> <li><font face="Courier">imach.exe</font>      <li>Download latest <font size="2" face="Courier New"><strong>imach-0.98nV-1-setup.exe</strong></font>
             the executable for Windows 95/98/NT compiled with gcc from          and execute it .</li>
             cygwin.</li> <li> gnuplot, the grapher use by IMaCh.  Its      <li> Download <font size="2" face="Courier
             reference manual and sources can be accessed from <a      New"><strong>gnuplot</strong></font> 4.6.5
             href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>.      at <a href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>
                 </ul>      ; at the end of the install it is asked if you want to have the
             </li>      gnuplot binary in your path, say yes.</li>
             <li>src: This subdirectory contains the source of the      <li>Different sub-directories are created:
                 program. It can be obtained by asking us by mail brouard at ined pointfr            <ul>
                 and lievre at ined pointfr              <li>doc: most of the documentation. The main document
                  .</li>                  is <a href="wiki/index.php/Documentation">http://euroreves.ined.fr/imach/wiki/index.php/Documentation</a> .</li>
         </ul>                  <ul> Here are also two data files:<font size="4"
     </li>                  face="Times New Roman"> </font><ul>
     <li>Right click on the .imach to either edit it or execute it with Imach.</li>                      <li><font face="Courier New">data1.txt</font>
     <li>Read the file README.txt or, better, click on <a                          which is the main data file on which the
         href="doc/imach.htm">doc/imach.htm</a></li>                          program has been run as the example in
 </ul>                          the main documentation.</li>
                       <li><font face="Courier New">mydata.txt </font>a
 <br>                          smaller data file which you can use for
 Imach version 0.98i of June 2006 can be downloaded as a setup.exe file                          your own trial.</li>
 <a href="imach-0.98i-1-setup.exe">                  </ul>
 http://euroreves.ined.fr/imach/imach-0.98i-1-setup.exe</a>. The IMaCh                 </ul>
 program and gnuplot will be installed in the directory that you want              <li>bin: <ul> <li><font face="Courier">imach.exe</font>
 (usually in Program Files). Please check the md5sum which is              the executable for Windows cross-compiled on OS/X with i386-mingw32-gcc
 67cdd50acb8f7abfa8ba22c60f592456 imach-0.98i-1-setup.exe              </li> <li> gnuplot, the grapher used by IMaCh.  Its
               reference manual and sources can be accessed from <a
 <br>We also changed the wordpad editor to notepad which is less useful              href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>.
 but exists on most Windows installation.  <br> For people who are not                  </ul>
 allowed to modify the registry of their Windows installation here is a              </li>
 second setup <a              <li>src: This subdirectory contains the source of the
 href="imach-0.98h-1-noreg-setup.exe">imach-0.98i-1-noreg-setup.exe</a>.                  program. It can be obtained by asking us by mail brouard at ined pointfr
 <br>                   .</li>
 25e1d824a4557799e11068a45bca2810 imach-0.98i-1-noreg-setup.exe          </ul>
       </li>
       <li>Right click on the .imach to either edit it or execute it with
 <p><a href="oldversions.html">Old Windows versions are accessible here.</a>      IMaCh. At the end of the program, IMaCh uses gnuplot to produce
 <h3>On Mac OS/X Panther only (october 2005)</h3>      the graphs, then you can open your browser to read the main .htm
       file with all results and graphs. If gnuplot is not installed or
 IMaCh can be easily compiled with gcc 3.3 on MacIntosh as soon as      not in your path, you have to run gnuplot on the ".gp" source file
 XCode (free download from Apple) is intalled on your MaCIntosh.<p>      generated by imach. Using wgnuplot you have to "open" it. </li>
       <li>Read the file README.txt
 It take a litle more time to get latest version of Gnuplot 4.0 for Mac  </ul>
 OS/X and to compile it on a MaC (sources tar.gz can be also accessed on our site from <a href=gnuplot-4.0.0.tar.gz>here</a>. The main problem resides in finding  
 the png library. Gif images are patented now and the replacement is  <br>
 png, but the development of the png library is growing on its own and  Imach version 0.98nV of August 2014 can be downloaded as a setup.exe file
 you just have to find on Google where it is hosted now.  <a href="imach-0.98nV-1-setup.exe">
   http://euroreves.ined.fr/imach/imach-0.98nV-1-setup.exe</a>. The IMaCh
 <br>  program and gnuplot will be installed in the directory that you want
 Gnuplot can be easily compiled on a MaC, but I don't know yet (July  (usually in Program Files). Please check the md5sum which is
 2004) which is default screen terminal driver for gnuplot.  e5ce179ee1e32d7514be82c0cc19e1fb imach-0.98nV-1-setup.exe
 As already said you need libpng (to be included in terms) which itself needs zlib on the same directory level. Boths sources can be acessed on the Web but here you can get the sources used on the MacOS/X Panther version (<a href- libpng-1.2.5.tgz>libpng-1.2.5.tgz</a> and <a href=zlib-1.2.1.tar.gz>zlib-1.2.1.tar.gz</a>.  
   <br>We also changed the wordpad editor to notepad which is less useful
 If X11 is already installed on your MaC (it is included on your installation CD  but exists on most Windows installation.  <br> For people who are not
 or you can download it from the WEB), then you can do <tt>set ter  allowed to modify the registry of their Windows installation here is a
 X11</tt> and <tt>plot sin(x)</tt> to get a nice sin curve on an X11  second setup <a
 window of your Mac.  href="imach-0.98nV-1-noreg-setup.exe">imach-0.98nV-1-noreg-setup.exe</a>.
   <br>
 <br> Let me add that for running IMaCh with all of its features, you don't  3b477ff19fc4607a32b412e9ad977101 imach-0.98nV-1-noreg-setup.exe
 need X11; the gnuplot program included in the distribution needs only  
 to have the png terminal driver to output graphs and these graphs will  
 be viewed by your browser.<br>  <p><a href="oldversions.html">Old Windows versions are accessible here.</a>
   <h3>On Mac OS/X Leopard  (August 2014)</h3>
 You need X11 only if you want to modify and test the gnuplot code output by  
 ImaCh, because it might be a more convenient way to view the graphs  IMaCh can be easily compiled with gcc 3.3 on MacIntosh as soon as
 directly on the screen than writing images on a file and viewing them  XCode (free download from Apple) is intalled on your MaCIntosh.<p>
 with a browser,  
   It take a litle more time to get version of Gnuplot 4.6.5+ for Mac OS/X
 <p>  and to compile it on a MaC.  Currently graphs are output as png
 You can download a .pkg.pax file at <a  files. We will probably moved to svg because the svg format is
         href="imach097b.pkg.pax">imach097b.pkg.pax</a>. Stuffit  scalable and thus figures are easier to improve and insert in other documents.
       Expander will expand the compressed file into a imach097b.pkg directory. Just  
       clicking on the directory will let you install IMaCh in a local  
       directory of your own (you have to create a new folder name IMaCh097b or whatever). Two sub-directories are created  <p>
       <tt>bin</tt> and <tt>html</tt> . In the bin subdirectory you  You can download a dmg file
       will find two executables <tt>imach</tt> itself and          at <a href="imach0.98nV.dmg">imach0.98nV.dmg</a> (md5sum
       <tt>gnuplot</tt>.          e2256e6bd4e6f944f17b6be366ce375c). Like on Windows, two
 <p>You can also download a dmg file (octobre 2005) still for Panther only (we do not have a Tiger version at INED yet) at <a href=imach-0.98panther.dmg>imach-0.98panther.dmg</a>.          sub-directories are created
         <tt>bin</tt> and <tt>html</tt> . In the bin subdirectory you
 <p>        will find two executables <tt>imach</tt> itself and
 You need to click on <tt>imach</tt> and IMaCh will be launched in a        <tt>gnuplot</tt>. 
 Terminal window, asking you to enter a <tt>parameter</tt> file. A  
 parameter file is text file with an extension <tt>.imach</tt> (but you  <p>
 can use a <tt>.txt</tt> extension if you want. Among the parameters  You need to click on <tt>imach</tt> application and IMaCh will be
 required, a data file name has to be entered. It can be a relative  launched in a Terminal window, asking you to enter
 file name like <tt>../../data/data1.txt</tt>. <br> If you open a new  a <tt>parameter</tt> file. A parameter file is a text file with an
 finder you can drag an IMaCh parameter file into the terminal IMaCh  extension <tt>.imach</tt> (but you can use a <tt>.txt</tt> extension
 Window that you just created.  if you want.  Among the parameters required, a data file name has to
 <p>  be entered. It can be a relative file name
 At the end of the run, and it order for the terminal window not to  like <tt>../../data/data1.txt</tt>. <br> If you open a new finder you
       disappear, the program will prompt for a command like "<tt>e</tt>" for  can drag an IMaCh parameter file into the terminal IMaCh Window that
       edit or "<tt>q</tt>" for quit. The edit command might not work  you just created.
       on a MaC, or on Unix or even on recent Windows, because the program should know which  <p>
       browser you are using and becauee the BROWSER environment  At the end of the run, and it order for the terminal window not to
       doesn't seem to be standard on a Mac and on some other OS too.  disappear, the program will prompt for a command like "<tt>e</tt>" for
   edit (with your browser) or "<tt>q</tt>" for quit.
 <br> The consequence for you is just that you have to use your finder  
       or browser (there is no more difference now) and click on the  <br> The consequence for you is just that you have to use your finder
       <tt>.html</tt> (or .htm) file created. The filename of this html        or browser (there is no more difference now) and click on the
       file is the same name as your parameter file, only the extension        <tt>.html</tt> (or .htm) file created. The filename of this html
       .imach is changed to .html.        file has the same name as your parameter file, only the extension
         .imach is changed to .html.
 <h3>On Linux</h3> There are various versions of Linux, gnuplot is  
 distributed on most distributions. Just verify that your version of  <h3>On Linux</h3> There are various versions of Linux, gnuplot is
 gnuplot is more recent than version 0.38i . I haven't had time to make  distributed on most distributions. Just verify that your version of
 a rpm yet, just ask us for the CVS tree location (not completely GPL  gnuplot is more recent than version 4.6 . I haven't had time to make
 today), and compile the sources. Remarks concerning the Linux versions  a rpm yet, just ask us for the CVS tree location (not completely GPL
 are similar to the Mac OS/X version. A binary rpm will be given as  today), and compile the sources. Remarks concerning the Linux versions
 soon as a src rpm will be given which means that the whole program  are similar to the Mac OS/X version.
 will be GPL licensed.  
   <p><a href="http://euroreves.ined.fr/imach/wiki/index.php/Documentation"><font color="#FF0000" size="6">Click
 <p><a href="doc/imach.htm"><font color="#FF0000" size="6">Click  here to access to the detailed documentation</font></a></p>
 here to access to the detailed documentation</font></a></p>  
   <p>This software have been partly granted
 <p>This software have been partly granted by <a  by <a href="http://euroreves.ined.fr">Euro-REVES</a>, a concerted
 href="http://euroreves.ined.fr">Euro-REVES</a>, a concerted action  action from the European Union. In 2003-2004 it has been granted by
 from the European Union. In 2003-2004 it has been granted by the  the French Institute on Longevity. In January 2014, it has been
 French Institute on Longevity. Our work is copyrighted as a GNU  granted by the Japan Society for the Promotion of Science
 software product, i.e. program and software can be distributed freely  (Grant-in-Aid for Scientific Research 25293121. 
 for non commercial use, but actually some sources are not widely  <p>
 distributed today because they borrow some codes from the book  Our work is copyrighted as a GNU software product, i.e. program and
 "Numerical Recipes in C" which is copyrighted. If you are an owner of  software can be distributed freely for non commercial use, but
 theses sources you can get our sources by asking us with a simple  actually some sources are not widely distributed today because they
 justification (name, email, Institute) <a  borrow some codes from the book "Numerical Recipes in C" which is
 href="mailto:imach-dev@listes.ined.fr">mailto:imach-dev@listes.ined.fr</a>  copyrighted. If you are an owner of theses sources you can get our
 </p>  sources by asking us with a simple justification (name, email,
   Institute) <a href="mailto:imach-dev@listes.ined.fr">mailto:imach-dev@listes.ined.fr</a>
 <p>Today we are two developpers only but we already use a private CVS  </p>
 server. The CVS server will be freely accessible as soon as we have  
 replaced "Numerical Recipes in C maximization routines" with  <p>Today we are two developpers only but we already use a private CVS
 equivalent routines from the new GNU scientific library.  server. The CVS server will be freely accessible as soon as we have
   replaced "Numerical Recipes in C maximization routines" with
 <p>Latest documentation can be accessed at <a  equivalent routines from the new GNU scientific library.
 href="http://euroreves.ined.fr/imach">http://euroreves.ined.fr/imach</a><br>  
 </p>  <p>Latest documentation can be accessed at <a
   href="http://euroreves.ined.fr/imach/wiki/index.php/Documentation">http://euroreves.ined.fr/imach/wiki/index.php/Documentation</a><br>
 <p> There is a public mailing list of IMaCh's users.  You can  
 subscribe by sending a mail to <a  <p> There is a public mailing list of IMaCh's users.  You can
 href=mailto:imach-users-subscribe@listes.ined.fr>imach-users-subscribe@listes.ined.fr</a>  subscribe by sending a mail to <a
 (and unsubscribe with <a  href=mailto:imach-users-subscribe@listes.ined.fr>imach-users-subscribe@listes.ined.fr</a>
 href=mailto:imach-users-unsubscribe@listes.ined.fr>imach-users-unsubscribe@listes.ined.fr</a>  (and unsubscribe with <a
 </p>  href=mailto:imach-users-unsubscribe@listes.ined.fr>imach-users-unsubscribe@listes.ined.fr</a>
   </p>
 <h2>IMaCh Wiki</h2>  
 As discussed at the last REVES meeting in <a href="http://www.prw.le.ac.uk/cgi-bin/reves/2005.cgi">Beijing</a>, we created a Wiki for IMaCh were people having used IMaCh (or having not been able to used it because of obscure or unadequate features) can add tips and discuss various aspects of IMaCh and interface with other statistical softwares. In many aspects, our "official documentation" is not accurate enough.  <h2>IMaCh Wiki</h2>
   As discussed at the REVES meeting in <a href="http://www.prw.le.ac.uk/cgi-bin/reves/2005.cgi">Beijing</a>, we created a Wiki for IMaCh were people having used IMaCh (or having not been able to use it because of obscure or unadequate features) can add tips and discuss various aspects of IMaCh and interface with other statistical softwares. In many aspects, our "official documentation" is not accurate enough.
 <p> Wikis are a very promising way to give information closer to your expectations. It also a very dynamic movement if you consider the first <a href="http://wikimania.wikimedia.org/wiki/Main_Page">International Wikimedia Conference in Francfurt</a> (August 2005), where most Wikis were represented and in particular <a href="http://wikipedia.org">Wikipedia</a>.  
   <p> Wikis are a very promising way to give information closer to your expectations. It also a very dynamic movement if you consider the first <a href="http://wikimania.wikimedia.org/wiki/Main_Page">International Wikimedia Conference in Francfurt</a> (August 2005), where most Wikis were represented and in particular <a href="http://wikipedia.org">Wikipedia</a>.
 <p><a href="wiki"><font color="#FF0000" size="6">Access to the new (August 2005) IMaCh Wiki</font></a></p>  
   <p><a href="wiki"><font color="#FF0000" size="6">Access to the IMaCh Wiki</font></a></p>. Please ask for a username and password.
   
   
   
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     Revision 1.14  2014/08/28 13:05:37  brouard
     Summary: New version 0.98nX
     Author: Nicolas Brouard
   
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