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 <h1 align="center"><font color="#00006A">Computing Health  <h1 align="center"><font color="#00006A">Computing Health
 Expectancies using IMaCh</font></h1>  Expectancies using IMaCh</font></h1>
 <h1 align="center"><font color="#00006A" size="5">(a Maximum  <h1 align="center"><font color="#00006A" size="5">(a Maximum
 Likelihood Computer Program using Interpolation of Markov Chains)</font></h1>  Likelihood Computer Program using Interpolation of Markov Chains)</font></h1>
   
 <p align="center"><a href="http://www.ined.fr/"><img  <p align="center"><a href="http://www.ined.fr/"><img
 src="doc/logo-ined.gif" border="0" width="151" height="76"></a><img  src="doc/logo-ined.gif" border="0" width="151" height="76"></a><img
 src="doc/euroreves2.gif" width="151" height="75"></p>  src="doc/euroreves2.gif" width="151" height="75"></p>
   
 <h3 align="center"><a href="http://www.ined.fr/"><font  <h3 align="center"><a href="http://www.ined.fr/"><font
 color="#00006A">INED</font></a><font color="#00006A"> and </font><a  color="#00006A">INED</font></a><font color="#00006A"> and </font><a
 href="http://euroreves.ined.fr"><font color="#00006A">EUROREVES</font></a></h3>  href="http://euroreves.ined.fr"><font color="#00006A">EUROREVES</font></a></h3>
   
 <p align="center"><font color="#00006A" size="4"><strong>August 2005</strong></font></p>  <p align="center"><font color="#00006A" size="4"><strong>August 2014</strong></font></p>
   
 <hr size="3" color="#EC5E5E">  <hr size="3" color="#EC5E5E">
   
 <h4 align="center"><font color="#00006A">Authors of the program: </font><a  <h4 align="center"><font color="#00006A">Authors of the program: </font><a
 href="http://sauvy.ined.fr/~brouard"><font color="#00006A">Nicolas  href="http://sauvy.ined.fr/~brouard"><font color="#00006A">Nicolas
 Brouard</font></a><font color="#00006A">, senior researcher at  Brouard</font></a><font color="#00006A">, senior researcher at
 the </font><a href="http://www.ined.fr"><font color="#00006A">Institut  the </font><a href="http://www.ined.fr"><font color="#00006A">Institut
 National d'Etudes Démographiques</font></a><font color="#00006A">  National d'Etudes Démographiques</font></a><font color="#00006A">
 (INED, Paris) in the "Mortality, Health and Epidemiology  (INED, Paris) in the "Mortality, Health and Epidemiology
 Research Unit" </font></h4>  Research Unit" </font></h4>
   
 <h4 align="center"><font color="#00006A">and Agnès Lièvre (PHD student at INED)</font></h4>  <h4 align="center"><font color="#00006A">and Agnès Lièvre (former PHD student at INED)</font></h4>
   
 <h4><font color="#00006A">Contribution to the mathematics: C. R.  <h4><font color="#00006A">Contribution to the mathematics: C. R.
 Heathcote </font><font color="#00006A" size="2">(Australian  Heathcote </font><font color="#00006A" size="2">(Australian
 National University, Canberra).</font></h4>  National University, Canberra).</font></h4>
   
 <h4><font color="#00006A">Contact: Agnès Lièvre (</font><a  <h4><font color="#00006A">Contact: Nicolas Brouard (</font><a
 href="mailto:lievre@ined.fr"><font color="#00006A"><i>lievre@ined.fr</i></font></a><font  href="mailto:brouard@ined.fr"><font color="#00006A"><i>brouard@ined.fr</i></font></a><font
 color="#00006A">) </font></h4>  color="#00006A">) </font></h4>
   
 <p> Main publication concerning the method is  <p> Main publication concerning the method is 
 <a href=http://taylorandfrancis.metapress.com/app/home/contribution.asp?wasp=1f99bwtvmk5yrb7hlhw3&referrer=parent&backto=issue,1,2;journal,2,5;linkingpublicationresults,1:300265,1  <a href=http://dx.doi.org/10.1080/713644739>Lièvre A., Brouard N. and Heathcote Ch. (2003) Estimating Health Expectancies 
 >Lièvre A., Brouard N. and Heathcote Ch. (2003) Estimating Health Expectancies  from Cross-longitudinal surveys. <em>Mathematical Population Studies</em>.- 10(4), pp. 211-248. DOI 10.1080/713644739</a>
 from Cross-longitudinal surveys. <em>Mathematical Population Studies</em>.- 10(4), pp. 211-248</a>  </p>
 </p>  
   <h2><font color="#EC5E5E"><strong>Download and instructions for installation</strong></font></h2>
 <h2><font color="#EC5E5E"><strong>Download and instructions for installation</strong></font></h2>  
   <h3> Current versions August 2014 </h3>
 <h3>On Windows (win9X, 2000, XP)</h3>  <ul>
 <p> Until June 2004 the installation did consist in a zip file which  <li>On Windows (win9X, 2000, XP, Vista, Windows 7, Windows 8): 0.98nV</li>
 had to be extracted in the directory of your choice. But with version  <li>On MacOS/X Leopard: 0.98nV</li>
 0.97b IMaCh we are using a windows installer (Inno setup).  Both  <li>On Linux, ask for the CVS version </li>
 executables <tt>imach.exe</tt> and <tt>gnuplot.exe</tt> (the grapher  </ul>
 that we are using) have to be on the same directory.  The grapher that IMaCh uses is gnuplot
   from <a href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>.
 <br> In order to facilitate the use of IMaCh we associated the .imach  Gnuplot has evolved since version IMaCh 0.98k and therefore you need
 extension to two features: editing and running. Thus by right clicking  at least Gnuplot 4.6. Otherwise you need to adapt the .gp file
 on a foo.imach file you can either 'edit'the file (default) with  produced in order to run with your old gnuplot.
 the notepad editor or 'run' it with gnuplot (you need a recent version).<br>  
   With the installer provided for OS/X and Windows, a recent gnuplot
       But we discovered that on some computers, people are not allowed  binary is provided and will be installed on the same directory that
       to modify the windows registry and need to have Administrator privileges.  the IMaCh binary.  It is better to use your own Gnuplot installation
   and IMaCh will test the command '''gnuplot''' but if the binary in not
      <br>  in your path, it will make a error but will use the binary provided by
       Thus we built two windows installer: a standard setup which will install  the installers. Using recent gnuplot installations, there is usually a
       the progam (usually in <tt>\Program Files\imach</tt> and will  possibility to add the gnuplot binary in your path.
       modify the registry to associate <tt>.imach</tt> extension to notepad and imach, and a  
       second which will not alter the registry. With this second installer you  <h3>On Windows (win9X, 2000, XP, Vista, Windows 7, Windows 8)</h3>
       will be able to install the programs in your home directory and  <p> Until June 2004 the installation did consist in a zip file which
       run it by clicking on the imach.exe icon. But you won't be able  had to be extracted in the directory of your choice. But with version
       to use the facility of the right clicking.  0.98d and above IMaCh we are using a windows installer (Inno setup).
 </p>  
   <br> In order to facilitate the use of IMaCh we associated the .imach
 <ul>  extension to two features: editing and running. Thus by right clicking
     <li>Download latest <font size="2" face="Courier New"><strong>imach-0.97b-setup.exe</strong></font>  on a foo.imach file you can either 'edit'the file (default) with
         and execute it .</li>  the notepad editor or 'run' it with gnuplot (you need a recent version).<br>
     <li>Different sub-directories are created:  
           <ul>        But we discovered that on some computers, people are not allowed
             <li>doc: most of the documentation. The main document        to modify the windows registry and need to have Administrator privileges.
                 is <a href="doc/imach.htm">doc/imach.htm</a> .</li>  
                 <ul> Here are also two data files:<font size="4"       <br>
                 face="Times New Roman"> </font><ul>        Thus we built two windows installer: a standard setup which will install
                     <li><font face="Courier New">data1.txt</font>        the progam (usually in <tt>\Program Files\imach</tt> and will
                         which is the main data file on which the        modify the registry to associate <tt>.imach</tt> extension to notepad and imach, and a
                         program has been run as the example in        second which will not alter the registry. With this second installer you
                         the main documentation.</li>        will be able to install the programs in your home directory and
                     <li><font face="Courier New">mydata.txt </font>a        run it by clicking on the imach.exe icon. But you won't be able
                         smaller data file which you can use for        to use the facility of the right clicking.
                         your own trial.</li>  </p>
                 </ul>  
                </ul>  <ul>
             <li>bin: <ul> <li><font face="Courier">imach.exe</font>      <li>Download latest <font size="2" face="Courier New"><strong>imach-0.98nV-1-setup.exe</strong></font>
             the executable for Windows 95/98/NT compiled with gcc from          and execute it .</li>
             cygwin.</li> <li> gnuplot, the grapher use by IMaCh.  Its      <li> Download <font size="2" face="Courier
             reference manual and sources can be accessed from <a      New"><strong>gnuplot</strong></font> 4.6.5
             href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>.      at <a href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>
                 </ul>      ; at the end of the install it is asked if you want to have the
             </li>      gnuplot binary in your path, say yes.</li>
             <li>src: This subdirectory contains the source of the      <li>Different sub-directories are created:
                 program. It can be obtained by asking us by mail <a            <ul>
                 href="mailto:brouard@ined.fr">mailto:brouard@ined.fr</a>              <li>doc: most of the documentation. The main document
                 and <a href="mailto:lievre@ined.fr">mailto:lievre@ined.fr</a>                  is <a href="wiki/index.php/Documentation">http://euroreves.ined.fr/imach/wiki/index.php/Documentation</a> .</li>
                 .</li>                  <ul> Here are also two data files:<font size="4"
         </ul>                  face="Times New Roman"> </font><ul>
     </li>                      <li><font face="Courier New">data1.txt</font>
     <li>Right click on the .imach to either edit it or execute it with Imach.</li>                          which is the main data file on which the
     <li>Read the file README.txt or, better, click on <a                          program has been run as the example in
         href="doc/imach.htm">doc/imach.htm</a></li>                          the main documentation.</li>
 </ul>                      <li><font face="Courier New">mydata.txt </font>a
                           smaller data file which you can use for
 <br>                          your own trial.</li>
 Imach version 0.97b of June 21 2004 can be downloaded as a setup.exe file                  </ul>
 <a href="imach-0.97b-2-setup.exe">                 </ul>
 http://euroreves.ined.fr/imach/imach-0.97b-2-setup.exe</a>. The IMaCh              <li>bin: <ul> <li><font face="Courier">imach.exe</font>
 program and gnuplot will be installed in the directory that you want              the executable for Windows cross-compiled on OS/X with i386-mingw32-gcc
 (usually in Program Files).  We made some errors in the new setup and              </li> <li> gnuplot, the grapher used by IMaCh.  Its
 some erlier versions did not work. Please check the md5sum which is              reference manual and sources can be accessed from <a
 3cb42bf71396d531d4bc3d42fee46a52 imach-0.97b-2-setup.exe              href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>.
                   </ul>
 <br>We also changed the wordpad editor to notepad which is less useful              </li>
 but exists on most Windows installation.  <br> For people who are not              <li>src: This subdirectory contains the source of the
 allowed to modify the registry of their Windows installation here is a                  program. It can be obtained by asking us by mail brouard at ined pointfr
 second setup <a                   .</li>
 href="imach-0.97b-2-noreg-setup.exe">imach-0.97b-2-noreg-setup.exe</a>.          </ul>
       </li>
 <p><a href="oldversions.html">Old Windows versions are accessible here.</a>      <li>Right click on the .imach to either edit it or execute it with
 <h3>On Mac OS/X Panther only (october 2005)</h3>      IMaCh. At the end of the program, IMaCh uses gnuplot to produce
       the graphs, then you can open your browser to read the main .htm
 IMaCh can be easily compiled with gcc 3.3 on MacIntosh as soon as      file with all results and graphs. If gnuplot is not installed or
 XCode (free download from Apple) is intalled on your MaCIntosh.<p>      not in your path, you have to run gnuplot on the ".gp" source file
       generated by imach. Using wgnuplot you have to "open" it. </li>
 It take a litle more time to get latest version of Gnuplot 4.0 for Mac      <li>Read the file README.txt
 OS/X and to compile it on a MaC (sources tar.gz can be also accessed on our site from <a href=gnuplot-4.0.0.tar.gz>here</a>. The main problem resides in finding  </ul>
 the png library. Gif images are patented now and the replacement is  
 png, but the development of the png library is growing on its own and  <br>
 you just have to find on Google where it is hosted now.  Imach version 0.98nV of August 2014 can be downloaded as a setup.exe file
   <a href="imach-0.98nV-1-setup.exe">
 <br>  http://euroreves.ined.fr/imach/imach-0.98nV-1-setup.exe</a>. The IMaCh
 Gnuplot can be easily compiled on a MaC, but I don't know yet (July  program and gnuplot will be installed in the directory that you want
 2004) which is default screen terminal driver for gnuplot.  (usually in Program Files). Please check the md5sum which is
 As already said you need libpng (to be included in terms) which itself needs zlib on the same directory level. Boths sources can be acessed on the Web but here you can get the sources used on the MacOS/X Panther version (<a href- libpng-1.2.5.tgz>libpng-1.2.5.tgz</a> and <a href=zlib-1.2.1.tar.gz>zlib-1.2.1.tar.gz</a>.  e5ce179ee1e32d7514be82c0cc19e1fb imach-0.98nV-1-setup.exe
   
 If X11 is already installed on your MaC (it is included on your installation CD  <br>We also changed the wordpad editor to notepad which is less useful
 or you can download it from the WEB), then you can do <tt>set ter  but exists on most Windows installation.  <br> For people who are not
 X11</tt> and <tt>plot sin(x)</tt> to get a nice sin curve on an X11  allowed to modify the registry of their Windows installation here is a
 window of your Mac.  second setup <a
   href="imach-0.98nV-1-noreg-setup.exe">imach-0.98nV-1-noreg-setup.exe</a>.
 <br> Let me add that for running IMaCh with all of its features, you don't  <br>
 need X11; the gnuplot program included in the distribution needs only  3b477ff19fc4607a32b412e9ad977101 imach-0.98nV-1-noreg-setup.exe
 to have the png terminal driver to output graphs and these graphs will  
 be viewed by your browser.<br>  
   <p><a href="oldversions.html">Old Windows versions are accessible here.</a>
 You need X11 only if you want to modify and test the gnuplot code output by  <h3>On Mac OS/X Leopard  (August 2014)</h3>
 ImaCh, because it might be a more convenient way to view the graphs  
 directly on the screen than writing images on a file and viewing them  IMaCh can be easily compiled with gcc 3.3 on MacIntosh as soon as
 with a browser,  XCode (free download from Apple) is intalled on your MaCIntosh.<p>
   
 <p>  It take a litle more time to get version of Gnuplot 4.6.5+ for Mac OS/X
 You can download a .pkg.pax file at <a  and to compile it on a MaC.  Currently graphs are output as png
         href="imach097b.pkg.pax">imach097b.pkg.pax</a>. Stuffit  files. We will probably moved to svg because the svg format is
       Expander will expand the compressed file into a imach097b.pkg directory. Just  scalable and thus figures are easier to improve and insert in other documents.
       clicking on the directory will let you install IMaCh in a local  
       directory of your own (you have to create a new folder name IMaCh097b or whatever). Two sub-directories are created  
       <tt>bin</tt> and <tt>html</tt> . In the bin subdirectory you  <p>
       will find two executables <tt>imach</tt> itself and  You can download a dmg file
       <tt>gnuplot</tt>.          at <a href="imach0.98nV.dmg">imach0.98nV.dmg</a> (md5sum
 <p>You can also download a dmg file (octobre 2005) still for Panther only (we do not have a Tiger version at INED yet) at <a href=imach-0.98panther.dmg>imach-0.98panther.dmg</a>.          e2256e6bd4e6f944f17b6be366ce375c). Like on Windows, two
           sub-directories are created
 <p>        <tt>bin</tt> and <tt>html</tt> . In the bin subdirectory you
 You need to click on <tt>imach</tt> and IMaCh will be launched in a        will find two executables <tt>imach</tt> itself and
 Terminal window, asking you to enter a <tt>parameter</tt> file. A        <tt>gnuplot</tt>. 
 parameter file is text file with an extension <tt>.imach</tt> (but you  
 can use a <tt>.txt</tt> extension if you want. Among the parameters  <p>
 required, a data file name has to be entered. It can be a relative  You need to click on <tt>imach</tt> application and IMaCh will be
 file name like <tt>../../data/data1.txt</tt>. <br> If you open a new  launched in a Terminal window, asking you to enter
 finder you can drag an IMaCh parameter file into the terminal IMaCh  a <tt>parameter</tt> file. A parameter file is a text file with an
 Window that you just created.  extension <tt>.imach</tt> (but you can use a <tt>.txt</tt> extension
 <p>  if you want.  Among the parameters required, a data file name has to
 At the end of the run, and it order for the terminal window not to  be entered. It can be a relative file name
       disappear, the program will prompt for a command like "<tt>e</tt>" for  like <tt>../../data/data1.txt</tt>. <br> If you open a new finder you
       edit or "<tt>q</tt>" for quit. The edit command might not work  can drag an IMaCh parameter file into the terminal IMaCh Window that
       on a MaC, or on Unix or even on recent Windows, because the program should know which  you just created.
       browser you are using and becauee the BROWSER environment  <p>
       doesn't seem to be standard on a Mac and on some other OS too.  At the end of the run, and it order for the terminal window not to
   disappear, the program will prompt for a command like "<tt>e</tt>" for
 <br> The consequence for you is just that you have to use your finder  edit (with your browser) or "<tt>q</tt>" for quit.
       or browser (there is no more difference now) and click on the  
       <tt>.html</tt> (or .htm) file created. The filename of this html  <br> The consequence for you is just that you have to use your finder
       file is the same name as your parameter file, only the extension        or browser (there is no more difference now) and click on the
       .imach is changed to .html.        <tt>.html</tt> (or .htm) file created. The filename of this html
         file has the same name as your parameter file, only the extension
 <h3>On Linux</h3> There are various versions of Linux, gnuplot is        .imach is changed to .html.
 distributed on most distributions. Just verify that your version of  
 gnuplot is more recent than version 0.38i . I haven't had time to make  <h3>On Linux</h3> There are various versions of Linux, gnuplot is
 a rpm yet, just ask us for the CVS tree location (not completely GPL  distributed on most distributions. Just verify that your version of
 today), and compile the sources. Remarks concerning the Linux versions  gnuplot is more recent than version 4.6 . I haven't had time to make
 are similar to the Mac OS/X version. A binary rpm will be given as  a rpm yet, just ask us for the CVS tree location (not completely GPL
 soon as a src rpm will be given which means that the whole program  today), and compile the sources. Remarks concerning the Linux versions
 will be GPL licensed.  are similar to the Mac OS/X version.
   
 <p><a href="doc/imach.htm"><font color="#FF0000" size="6">Click  <p><a href="http://euroreves.ined.fr/imach/wiki/index.php/Documentation"><font color="#FF0000" size="6">Click
 here to access to the detailed documentation</font></a></p>  here to access to the detailed documentation</font></a></p>
   
 <p>This software have been partly granted by <a  <p>This software have been partly granted
 href="http://euroreves.ined.fr">Euro-REVES</a>, a concerted action  by <a href="http://euroreves.ined.fr">Euro-REVES</a>, a concerted
 from the European Union. In 2003-2004 it has been granted by the  action from the European Union. In 2003-2004 it has been granted by
 French Institute on Longevity. Our work is copyrighted as a GNU  the French Institute on Longevity. In January 2014, it has been
 software product, i.e. program and software can be distributed freely  granted by the Japan Society for the Promotion of Science
 for non commercial use, but actually some sources are not widely  (Grant-in-Aid for Scientific Research 25293121. 
 distributed today because they borrow some codes from the book  <p>
 "Numerical Recipes in C" which is copyrighted. If you are an owner of  Our work is copyrighted as a GNU software product, i.e. program and
 theses sources you can get our sources by asking us with a simple  software can be distributed freely for non commercial use, but
 justification (name, email, Institute) <a  actually some sources are not widely distributed today because they
 href="mailto:imach-dev@listes.ined.fr">mailto:imach-dev@listes.ined.fr</a>  borrow some codes from the book "Numerical Recipes in C" which is
 </p>  copyrighted. If you are an owner of theses sources you can get our
   sources by asking us with a simple justification (name, email,
 <p>Today we are two developpers only but we already use a private CVS  Institute) <a href="mailto:imach-dev@listes.ined.fr">mailto:imach-dev@listes.ined.fr</a>
 server. The CVS server will be freely accessible as soon as we have  </p>
 replaced "Numerical Recipes in C maximization routines" with  
 equivalent routines from the new GNU scientific library.  <p>Today we are two developpers only but we already use a private CVS
   server. The CVS server will be freely accessible as soon as we have
 <p>Latest documentation can be accessed at <a  replaced "Numerical Recipes in C maximization routines" with
 href="http://euroreves.ined.fr/imach">http://euroreves.ined.fr/imach</a><br>  equivalent routines from the new GNU scientific library.
 </p>  
   <p>Latest documentation can be accessed at <a
 <p> There is a public mailing list of IMaCh's users.  You can  href="http://euroreves.ined.fr/imach/wiki/index.php/Documentation">http://euroreves.ined.fr/imach/wiki/index.php/Documentation</a><br>
 subscribe by sending a mail to <a  
 href=mailto:imach-users-subscribe@listes.ined.fr>imach-users-subscribe@listes.ined.fr</a>  <p> There is a public mailing list of IMaCh's users.  You can
 (and unsubscribe with <a  subscribe by sending a mail to <a
 href=mailto:imach-users-unsubscribe@listes.ined.fr>imach-users-unsubscribe@listes.ined.fr</a>  href=mailto:imach-users-subscribe@listes.ined.fr>imach-users-subscribe@listes.ined.fr</a>
 </p>  (and unsubscribe with <a
   href=mailto:imach-users-unsubscribe@listes.ined.fr>imach-users-unsubscribe@listes.ined.fr</a>
 <h2>IMaCh Wiki</h2>  </p>
 As discussed at the last REVES meeting in <a href="http://www.prw.le.ac.uk/cgi-bin/reves/2005.cgi">Beijing</a>, we created a Wiki for IMaCh were people having used IMaCh (or having not been able to used it because of obscure or unadequate features) can add tips and discuss various aspects of IMaCh and interface with other statistical softwares. In many aspects, our "official documentation" is not accurate enough.  
   <h2>IMaCh Wiki</h2>
 <p> Wikis are a very promising way to give information closer to your expectations. It also a very dynamic movement if you consider the first <a href="http://wikimania.wikimedia.org/wiki/Main_Page">International Wikimedia Conference in Francfurt</a> (August 2005), where most Wikis were represented and in particular <a href="http://wikipedia.org">Wikipedia</a>.  As discussed at the REVES meeting in <a href="http://www.prw.le.ac.uk/cgi-bin/reves/2005.cgi">Beijing</a>, we created a Wiki for IMaCh were people having used IMaCh (or having not been able to use it because of obscure or unadequate features) can add tips and discuss various aspects of IMaCh and interface with other statistical softwares. In many aspects, our "official documentation" is not accurate enough.
   
 <p><a href="wiki"><font color="#FF0000" size="6">Access to the new (August 2005) IMaCh Wiki</font></a></p>  <p> Wikis are a very promising way to give information closer to your expectations. It also a very dynamic movement if you consider the first <a href="http://wikimania.wikimedia.org/wiki/Main_Page">International Wikimedia Conference in Francfurt</a> (August 2005), where most Wikis were represented and in particular <a href="http://wikipedia.org">Wikipedia</a>.
   
   <p><a href="wiki"><font color="#FF0000" size="6">Access to the IMaCh Wiki</font></a></p>. Please ask for a username and password.
   
   
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     Revision 1.14  2014/08/28 13:05:37  brouard
     Summary: New version 0.98nX
     Author: Nicolas Brouard
   
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