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<title>Computing Health Expectancies using IMaCh</title>
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<title>Computing Health Expectancies using IMaCh</title> |
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<h1 align="center"><font color="#00006A">Computing Health
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<h1 align="center"><font color="#00006A">Computing Health |
Expectancies using IMaCh</font></h1>
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Expectancies using IMaCh</font></h1> |
<h1 align="center"><font color="#00006A" size="5">(a Maximum
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<h1 align="center"><font color="#00006A" size="5">(a Maximum |
Likelihood Computer Program using Interpolation of Markov Chains)</font></h1>
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Likelihood Computer Program using Interpolation of Markov Chains)</font></h1> |
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<p align="center"><a href="http://www.ined.fr/"><img
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<p align="center"><a href="http://www.ined.fr/"><img |
src="doc/logo-ined.gif" border="0" width="151" height="76"></a><img
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src="doc/logo-ined.gif" border="0" width="151" height="76"></a><img |
src="doc/euroreves2.gif" width="151" height="75"></p>
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src="doc/euroreves2.gif" width="151" height="75"></p> |
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<h3 align="center"><a href="http://www.ined.fr/"><font
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<h3 align="center"><a href="http://www.ined.fr/"><font |
color="#00006A">INED</font></a><font color="#00006A"> and </font><a
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color="#00006A">INED</font></a><font color="#00006A"> and </font><a |
href="http://euroreves.ined.fr"><font color="#00006A">EUROREVES</font></a></h3>
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href="http://euroreves.ined.fr"><font color="#00006A">EUROREVES</font></a></h3> |
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<p align="center"><font color="#00006A" size="4"><strong>March 2006</strong></font></p>
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<p align="center"><font color="#00006A" size="4"><strong>August 2014</strong></font></p> |
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<hr size="3" color="#EC5E5E">
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<hr size="3" color="#EC5E5E"> |
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<h4 align="center"><font color="#00006A">Authors of the program: </font><a
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<h4 align="center"><font color="#00006A">Authors of the program: </font><a |
href="http://sauvy.ined.fr/~brouard"><font color="#00006A">Nicolas
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href="http://sauvy.ined.fr/~brouard"><font color="#00006A">Nicolas |
Brouard</font></a><font color="#00006A">, senior researcher at
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Brouard</font></a><font color="#00006A">, senior researcher at |
the </font><a href="http://www.ined.fr"><font color="#00006A">Institut
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the </font><a href="http://www.ined.fr"><font color="#00006A">Institut |
National d'Etudes Démographiques</font></a><font color="#00006A">
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National d'Etudes Démographiques</font></a><font color="#00006A"> |
(INED, Paris) in the "Mortality, Health and Epidemiology
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(INED, Paris) in the "Mortality, Health and Epidemiology |
Research Unit" </font></h4>
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Research Unit" </font></h4> |
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<h4 align="center"><font color="#00006A">and Agnès Lièvre (PHD student at INED)</font></h4>
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<h4 align="center"><font color="#00006A">and Agnès Lièvre (former PHD student at INED)</font></h4> |
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<h4><font color="#00006A">Contribution to the mathematics: C. R.
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<h4><font color="#00006A">Contribution to the mathematics: C. R. |
Heathcote </font><font color="#00006A" size="2">(Australian
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Heathcote </font><font color="#00006A" size="2">(Australian |
National University, Canberra).</font></h4>
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National University, Canberra).</font></h4> |
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<h4><font color="#00006A">Contact: Agnès Lièvre (</font><a
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<h4><font color="#00006A">Contact: Nicolas Brouard (</font><a |
href="mailto:lievre@ined.fr"><font color="#00006A"><i>lievre@ined.fr</i></font></a><font
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href="mailto:brouard@ined.fr"><font color="#00006A"><i>brouard@ined.fr</i></font></a><font |
color="#00006A">) </font></h4>
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color="#00006A">) </font></h4> |
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<p> Main publication concerning the method is
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<p>Â Main publication concerning the method is |
<a href=http://taylorandfrancis.metapress.com/app/home/contribution.asp?wasp=1f99bwtvmk5yrb7hlhw3&referrer=parent&backto=issue,1,2;journal,2,5;linkingpublicationresults,1:300265,1
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<a href=http://dx.doi.org/10.1080/713644739>Lièvre A., Brouard N. and Heathcote Ch. (2003) Estimating Health Expectancies |
>Lièvre A., Brouard N. and Heathcote Ch. (2003) Estimating Health Expectancies
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from Cross-longitudinal surveys. <em>Mathematical Population Studies</em>.- 10(4), pp. 211-248. DOI 10.1080/713644739</a> |
from Cross-longitudinal surveys. <em>Mathematical Population Studies</em>.- 10(4), pp. 211-248</a>
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</p>
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<h2><font color="#EC5E5E"><strong>Download and instructions for installation</strong></font></h2> |
<h2><font color="#EC5E5E"><strong>Download and instructions for installation</strong></font></h2>
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<h3> Current versions August 2014 </h3> |
<h3>On Windows (win9X, 2000, XP)</h3>
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<ul> |
<p> Until June 2004 the installation did consist in a zip file which
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<li>On Windows (win9X, 2000, XP, Vista, Windows 7, Windows 8): 0.98nV</li> |
had to be extracted in the directory of your choice. But with version
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<li>On MacOS/X Leopard: 0.98nV</li> |
0.98d IMaCh we are using a windows installer (Inno setup). Both
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<li>On Linux, ask for the CVS version </li> |
executables <tt>imach.exe</tt> and <tt>gnuplot.exe</tt> (the grapher
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</ul> |
that we are using) have to be on the same directory.
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The grapher that IMaCh uses is gnuplot |
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from <a href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>. |
<br> In order to facilitate the use of IMaCh we associated the .imach
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Gnuplot has evolved since version IMaCh 0.98k and therefore you need |
extension to two features: editing and running. Thus by right clicking
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at least Gnuplot 4.6. Otherwise you need to adapt the .gp file |
on a foo.imach file you can either 'edit'the file (default) with
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produced in order to run with your old gnuplot. |
the notepad editor or 'run' it with gnuplot (you need a recent version).<br>
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With the installer provided for OS/X and Windows, a recent gnuplot |
But we discovered that on some computers, people are not allowed
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binary is provided and will be installed on the same directory that |
to modify the windows registry and need to have Administrator privileges.
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the IMaCh binary. It is better to use your own Gnuplot installation |
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and IMaCh will test the command '''gnuplot''' but if the binary in not |
<br>
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in your path, it will make a error but will use the binary provided by |
Thus we built two windows installer: a standard setup which will install
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the installers. Using recent gnuplot installations, there is usually a |
the progam (usually in <tt>\Program Files\imach</tt> and will
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possibility to add the gnuplot binary in your path. |
modify the registry to associate <tt>.imach</tt> extension to notepad and imach, and a
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second which will not alter the registry. With this second installer you
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<h3>On Windows (win9X, 2000, XP, Vista, Windows 7, Windows 8)</h3> |
will be able to install the programs in your home directory and
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<p> Until June 2004 the installation did consist in a zip file which |
run it by clicking on the imach.exe icon. But you won't be able
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had to be extracted in the directory of your choice. But with version |
to use the facility of the right clicking.
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0.98d and above IMaCh we are using a windows installer (Inno setup). |
</p>
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<br> In order to facilitate the use of IMaCh we associated the .imach |
<ul>
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extension to two features: editing and running. Thus by right clicking |
<li>Download latest <font size="2" face="Courier New"><strong>imach-0.98d-1-setup.exe</strong></font>
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on a foo.imach file you can either 'edit'the file (default) with |
and execute it .</li>
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the notepad editor or 'run' it with gnuplot (you need a recent version).<br> |
<li>Different sub-directories are created:
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<ul>
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But we discovered that on some computers, people are not allowed |
<li>doc: most of the documentation. The main document
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to modify the windows registry and need to have Administrator privileges. |
is <a href="doc/imach.htm">doc/imach.htm</a> .</li>
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<ul> Here are also two data files:<font size="4"
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<br> |
face="Times New Roman"> </font><ul>
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Thus we built two windows installer: a standard setup which will install |
<li><font face="Courier New">data1.txt</font>
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the progam (usually in <tt>\Program Files\imach</tt> and will |
which is the main data file on which the
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modify the registry to associate <tt>.imach</tt> extension to notepad and imach, and a |
program has been run as the example in
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second which will not alter the registry. With this second installer you |
the main documentation.</li>
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will be able to install the programs in your home directory and |
<li><font face="Courier New">mydata.txt </font>a
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run it by clicking on the imach.exe icon. But you won't be able |
smaller data file which you can use for
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to use the facility of the right clicking. |
your own trial.</li>
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</p> |
</ul>
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</ul>
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<ul> |
<li>bin: <ul> <li><font face="Courier">imach.exe</font>
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<li>Download latest <font size="2" face="Courier New"><strong>imach-0.98nV-1-setup.exe</strong></font> |
the executable for Windows 95/98/NT compiled with gcc from
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and execute it .</li> |
cygwin.</li> <li> gnuplot, the grapher use by IMaCh. Its
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<li> Download <font size="2" face="Courier |
reference manual and sources can be accessed from <a
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New"><strong>gnuplot</strong></font> 4.6.5 |
href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>.
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at <a href="http://www.gnuplot.info/">http://www.gnuplot.info/</a> |
</ul>
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; at the end of the install it is asked if you want to have the |
</li>
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gnuplot binary in your path, say yes.</li> |
<li>src: This subdirectory contains the source of the
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<li>Different sub-directories are created: |
program. It can be obtained by asking us by mail brouard at ined pointfr
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<ul> |
and lievre at ined pointfr
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<li>doc: most of the documentation. The main document |
.</li>
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is <a href="wiki/index.php/Documentation">http://euroreves.ined.fr/imach/wiki/index.php/Documentation</a> .</li> |
</ul>
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<ul> Here are also two data files:<font size="4" |
</li>
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face="Times New Roman"> </font><ul> |
<li>Right click on the .imach to either edit it or execute it with Imach.</li>
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<li><font face="Courier New">data1.txt</font> |
<li>Read the file README.txt or, better, click on <a
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which is the main data file on which the |
href="doc/imach.htm">doc/imach.htm</a></li>
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program has been run as the example in |
</ul>
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the main documentation.</li> |
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<li><font face="Courier New">mydata.txt </font>a |
<br>
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smaller data file which you can use for |
Imach version 0.98d of March 2006 can be downloaded as a setup.exe file
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your own trial.</li> |
<a href="imach-0.98d-1-setup.exe">
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</ul> |
http://euroreves.ined.fr/imach/imach-0.98d-1-setup.exe</a>. The IMaCh
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</ul> |
program and gnuplot will be installed in the directory that you want
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<li>bin: <ul> <li><font face="Courier">imach.exe</font> |
(usually in Program Files). We made some errors in the new setup and
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the executable for Windows cross-compiled on OS/X with i386-mingw32-gcc |
some erlier versions did not work. Please check the md5sum which is
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</li> <li> gnuplot, the grapher used by IMaCh. Its |
94c07ab43327952f61be150bf611057f imach-0.98d-1-setup.exe
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reference manual and sources can be accessed from <a |
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href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>. |
<br>We also changed the wordpad editor to notepad which is less useful
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</ul> |
but exists on most Windows installation. <br> For people who are not
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</li> |
allowed to modify the registry of their Windows installation here is a
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<li>src: This subdirectory contains the source of the |
second setup <a
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program. It can be obtained by asking us by mail brouard at ined pointfr |
href="imach-0.98d-1-noreg-setup.exe">imach-0.98d-1-noreg-setup.exe</a>.
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.</li> |
<br>
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</ul> |
16a26867b4d49d96b136f5564cf7db21 imach-0.98d-1-noreg-setup.exe
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</li> |
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<li>Right click on the .imach to either edit it or execute it with |
<p><a href="oldversions.html">Old Windows versions are accessible here.</a>
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IMaCh. At the end of the program, IMaCh uses gnuplot to produce |
<h3>On Mac OS/X Panther only (october 2005)</h3>
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the graphs, then you can open your browser to read the main .htm |
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file with all results and graphs. If gnuplot is not installed or |
IMaCh can be easily compiled with gcc 3.3 on MacIntosh as soon as
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not in your path, you have to run gnuplot on the ".gp" source file |
XCode (free download from Apple) is intalled on your MaCIntosh.<p>
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generated by imach. Using wgnuplot you have to "open" it. </li> |
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<li>Read the file README.txt |
It take a litle more time to get latest version of Gnuplot 4.0 for Mac
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</ul> |
OS/X and to compile it on a MaC (sources tar.gz can be also accessed on our site from <a href=gnuplot-4.0.0.tar.gz>here</a>. The main problem resides in finding
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the png library. Gif images are patented now and the replacement is
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<br> |
png, but the development of the png library is growing on its own and
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Imach version 0.98nV of August 2014 can be downloaded as a setup.exe file |
you just have to find on Google where it is hosted now.
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<a href="imach-0.98nV-1-setup.exe"> |
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http://euroreves.ined.fr/imach/imach-0.98nV-1-setup.exe</a>. The IMaCh |
<br>
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program and gnuplot will be installed in the directory that you want |
Gnuplot can be easily compiled on a MaC, but I don't know yet (July
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(usually in Program Files). Please check the md5sum which is |
2004) which is default screen terminal driver for gnuplot.
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e5ce179ee1e32d7514be82c0cc19e1fb imach-0.98nV-1-setup.exe |
As already said you need libpng (to be included in terms) which itself needs zlib on the same directory level. Boths sources can be acessed on the Web but here you can get the sources used on the MacOS/X Panther version (<a href- libpng-1.2.5.tgz>libpng-1.2.5.tgz</a> and <a href=zlib-1.2.1.tar.gz>zlib-1.2.1.tar.gz</a>.
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<br>We also changed the wordpad editor to notepad which is less useful |
If X11 is already installed on your MaC (it is included on your installation CD
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but exists on most Windows installation. <br> For people who are not |
or you can download it from the WEB), then you can do <tt>set ter
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allowed to modify the registry of their Windows installation here is a |
X11</tt> and <tt>plot sin(x)</tt> to get a nice sin curve on an X11
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second setup <a |
window of your Mac.
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href="imach-0.98nV-1-noreg-setup.exe">imach-0.98nV-1-noreg-setup.exe</a>. |
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<br> |
<br> Let me add that for running IMaCh with all of its features, you don't
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3b477ff19fc4607a32b412e9ad977101 imach-0.98nV-1-noreg-setup.exe |
need X11; the gnuplot program included in the distribution needs only
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to have the png terminal driver to output graphs and these graphs will
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be viewed by your browser.<br>
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<p><a href="oldversions.html">Old Windows versions are accessible here.</a> |
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<h3>On Mac OS/X Leopard (August 2014)</h3> |
You need X11 only if you want to modify and test the gnuplot code output by
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ImaCh, because it might be a more convenient way to view the graphs
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IMaCh can be easily compiled with gcc 3.3 on MacIntosh as soon as |
directly on the screen than writing images on a file and viewing them
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XCode (free download from Apple) is intalled on your MaCIntosh.<p> |
with a browser,
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It take a litle more time to get version of Gnuplot 4.6.5+ for Mac OS/X |
<p>
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and to compile it on a MaC. Currently graphs are output as png |
You can download a .pkg.pax file at <a
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files. We will probably moved to svg because the svg format is |
href="imach097b.pkg.pax">imach097b.pkg.pax</a>. Stuffit
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scalable and thus figures are easier to improve and insert in other documents. |
Expander will expand the compressed file into a imach097b.pkg directory. Just
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clicking on the directory will let you install IMaCh in a local
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directory of your own (you have to create a new folder name IMaCh097b or whatever). Two sub-directories are created
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<p> |
<tt>bin</tt> and <tt>html</tt> . In the bin subdirectory you
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You can download a dmg file |
will find two executables <tt>imach</tt> itself and
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at <a href="imach0.98nV.dmg">imach0.98nV.dmg</a> (md5sum |
<tt>gnuplot</tt>.
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e2256e6bd4e6f944f17b6be366ce375c). Like on Windows, two |
<p>You can also download a dmg file (octobre 2005) still for Panther only (we do not have a Tiger version at INED yet) at <a href=imach-0.98panther.dmg>imach-0.98panther.dmg</a>.
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sub-directories are created |
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<tt>bin</tt> and <tt>html</tt> . In the bin subdirectory you |
<p>
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will find two executables <tt>imach</tt> itself and |
You need to click on <tt>imach</tt> and IMaCh will be launched in a
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<tt>gnuplot</tt>. |
Terminal window, asking you to enter a <tt>parameter</tt> file. A
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parameter file is text file with an extension <tt>.imach</tt> (but you
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<p> |
can use a <tt>.txt</tt> extension if you want. Among the parameters
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You need to click on <tt>imach</tt> application and IMaCh will be |
required, a data file name has to be entered. It can be a relative
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launched in a Terminal window, asking you to enter |
file name like <tt>../../data/data1.txt</tt>. <br> If you open a new
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a <tt>parameter</tt> file. A parameter file is a text file with an |
finder you can drag an IMaCh parameter file into the terminal IMaCh
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extension <tt>.imach</tt> (but you can use a <tt>.txt</tt> extension |
Window that you just created.
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if you want. Among the parameters required, a data file name has to |
<p>
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be entered. It can be a relative file name |
At the end of the run, and it order for the terminal window not to
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like <tt>../../data/data1.txt</tt>. <br> If you open a new finder you |
disappear, the program will prompt for a command like "<tt>e</tt>" for
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can drag an IMaCh parameter file into the terminal IMaCh Window that |
edit or "<tt>q</tt>" for quit. The edit command might not work
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you just created. |
on a MaC, or on Unix or even on recent Windows, because the program should know which
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<p> |
browser you are using and becauee the BROWSER environment
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At the end of the run, and it order for the terminal window not to |
doesn't seem to be standard on a Mac and on some other OS too.
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disappear, the program will prompt for a command like "<tt>e</tt>" for |
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edit (with your browser) or "<tt>q</tt>" for quit. |
<br> The consequence for you is just that you have to use your finder
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or browser (there is no more difference now) and click on the
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<br> The consequence for you is just that you have to use your finder |
<tt>.html</tt> (or .htm) file created. The filename of this html
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or browser (there is no more difference now) and click on the |
file is the same name as your parameter file, only the extension
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<tt>.html</tt> (or .htm) file created. The filename of this html |
.imach is changed to .html.
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file has the same name as your parameter file, only the extension |
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.imach is changed to .html. |
<h3>On Linux</h3> There are various versions of Linux, gnuplot is
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distributed on most distributions. Just verify that your version of
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<h3>On Linux</h3> There are various versions of Linux, gnuplot is |
gnuplot is more recent than version 0.38i . I haven't had time to make
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distributed on most distributions. Just verify that your version of |
a rpm yet, just ask us for the CVS tree location (not completely GPL
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gnuplot is more recent than version 4.6 . I haven't had time to make |
today), and compile the sources. Remarks concerning the Linux versions
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a rpm yet, just ask us for the CVS tree location (not completely GPL |
are similar to the Mac OS/X version. A binary rpm will be given as
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today), and compile the sources. Remarks concerning the Linux versions |
soon as a src rpm will be given which means that the whole program
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are similar to the Mac OS/X version. |
will be GPL licensed.
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<p><a href="http://euroreves.ined.fr/imach/wiki/index.php/Documentation"><font color="#FF0000" size="6">Click |
<p><a href="doc/imach.htm"><font color="#FF0000" size="6">Click
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here to access to the detailed documentation</font></a></p> |
here to access to the detailed documentation</font></a></p>
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<p>This software have been partly granted |
<p>This software have been partly granted by <a
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by <a href="http://euroreves.ined.fr">Euro-REVES</a>, a concerted |
href="http://euroreves.ined.fr">Euro-REVES</a>, a concerted action
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action from the European Union. In 2003-2004 it has been granted by |
from the European Union. In 2003-2004 it has been granted by the
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the French Institute on Longevity. In January 2014, it has been |
French Institute on Longevity. Our work is copyrighted as a GNU
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granted by the Japan Society for the Promotion of Science |
software product, i.e. program and software can be distributed freely
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(Grant-in-Aid for Scientific Research 25293121. |
for non commercial use, but actually some sources are not widely
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<p> |
distributed today because they borrow some codes from the book
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Our work is copyrighted as a GNU software product, i.e. program and |
"Numerical Recipes in C" which is copyrighted. If you are an owner of
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software can be distributed freely for non commercial use, but |
theses sources you can get our sources by asking us with a simple
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actually some sources are not widely distributed today because they |
justification (name, email, Institute) <a
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borrow some codes from the book "Numerical Recipes in C" which is |
href="mailto:imach-dev@listes.ined.fr">mailto:imach-dev@listes.ined.fr</a>
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copyrighted. If you are an owner of theses sources you can get our |
</p>
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sources by asking us with a simple justification (name, email, |
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Institute) <a href="mailto:imach-dev@listes.ined.fr">mailto:imach-dev@listes.ined.fr</a> |
<p>Today we are two developpers only but we already use a private CVS
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</p> |
server. The CVS server will be freely accessible as soon as we have
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replaced "Numerical Recipes in C maximization routines" with
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<p>Today we are two developpers only but we already use a private CVS |
equivalent routines from the new GNU scientific library.
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server. The CVS server will be freely accessible as soon as we have |
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replaced "Numerical Recipes in C maximization routines" with |
<p>Latest documentation can be accessed at <a
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equivalent routines from the new GNU scientific library. |
href="http://euroreves.ined.fr/imach">http://euroreves.ined.fr/imach</a><br>
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</p>
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<p>Latest documentation can be accessed at <a |
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href="http://euroreves.ined.fr/imach/wiki/index.php/Documentation">http://euroreves.ined.fr/imach/wiki/index.php/Documentation</a><br> |
<p> There is a public mailing list of IMaCh's users. You can
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subscribe by sending a mail to <a
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<p> There is a public mailing list of IMaCh's users. You can |
href=mailto:imach-users-subscribe@listes.ined.fr>imach-users-subscribe@listes.ined.fr</a>
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subscribe by sending a mail to <a |
(and unsubscribe with <a
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href=mailto:imach-users-subscribe@listes.ined.fr>imach-users-subscribe@listes.ined.fr</a> |
href=mailto:imach-users-unsubscribe@listes.ined.fr>imach-users-unsubscribe@listes.ined.fr</a>
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(and unsubscribe with <a |
</p>
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href=mailto:imach-users-unsubscribe@listes.ined.fr>imach-users-unsubscribe@listes.ined.fr</a> |
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</p> |
<h2>IMaCh Wiki</h2>
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As discussed at the last REVES meeting in <a href="http://www.prw.le.ac.uk/cgi-bin/reves/2005.cgi">Beijing</a>, we created a Wiki for IMaCh were people having used IMaCh (or having not been able to used it because of obscure or unadequate features) can add tips and discuss various aspects of IMaCh and interface with other statistical softwares. In many aspects, our "official documentation" is not accurate enough.
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<h2>IMaCh Wiki</h2> |
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As discussed at the REVES meeting in <a href="http://www.prw.le.ac.uk/cgi-bin/reves/2005.cgi">Beijing</a>, we created a Wiki for IMaCh were people having used IMaCh (or having not been able to use it because of obscure or unadequate features) can add tips and discuss various aspects of IMaCh and interface with other statistical softwares. In many aspects, our "official documentation" is not accurate enough. |
<p> Wikis are a very promising way to give information closer to your expectations. It also a very dynamic movement if you consider the first <a href="http://wikimania.wikimedia.org/wiki/Main_Page">International Wikimedia Conference in Francfurt</a> (August 2005), where most Wikis were represented and in particular <a href="http://wikipedia.org">Wikipedia</a>.
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<p> Wikis are a very promising way to give information closer to your expectations. It also a very dynamic movement if you consider the first <a href="http://wikimania.wikimedia.org/wiki/Main_Page">International Wikimedia Conference in Francfurt</a> (August 2005), where most Wikis were represented and in particular <a href="http://wikipedia.org">Wikipedia</a>. |
<p><a href="wiki"><font color="#FF0000" size="6">Access to the new (August 2005) IMaCh Wiki</font></a></p>
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<p><a href="wiki"><font color="#FF0000" size="6">Access to the IMaCh Wiki</font></a></p>. Please ask for a username and password. |
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