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<title>Computing Health Expectancies using IMaCh</title>
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<title>Computing Health Expectancies using IMaCh</title> |
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<h1 align="center"><font color="#00006A">Computing Health
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<h1 align="center"><font color="#00006A">Computing Health |
Expectancies using IMaCh</font></h1>
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Expectancies using IMaCh</font></h1> |
<h1 align="center"><font color="#00006A" size="5">(a Maximum
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<h1 align="center"><font color="#00006A" size="5">(a Maximum |
Likelihood Computer Program using Interpolation of Markov Chains)</font></h1>
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Likelihood Computer Program using Interpolation of Markov Chains)</font></h1> |
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<p align="center"><a href="http://www.ined.fr/"><img
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<p align="center"><a href="http://www.ined.fr/"><img |
src="doc/logo-ined.gif" border="0" width="151" height="76"></a><img
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src="doc/logo-ined.gif" border="0" width="151" height="76"></a><img |
src="doc/euroreves2.gif" width="151" height="75"></p>
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src="doc/euroreves2.gif" width="151" height="75"></p> |
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<h3 align="center"><a href="http://www.ined.fr/"><font
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<h3 align="center"><a href="http://www.ined.fr/"><font |
color="#00006A">INED</font></a><font color="#00006A"> and </font><a
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color="#00006A">INED</font></a><font color="#00006A"> and </font><a |
href="http://euroreves.ined.fr"><font color="#00006A">EUROREVES</font></a></h3>
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href="http://euroreves.ined.fr"><font color="#00006A">EUROREVES</font></a></h3> |
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<p align="center"><font color="#00006A" size="4"><strong>June 2004</strong></font></p>
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<p align="center"><font color="#00006A" size="4"><strong>August 2014</strong></font></p> |
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<hr size="3" color="#EC5E5E">
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<hr size="3" color="#EC5E5E"> |
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<h4 align="center"><font color="#00006A">Authors of the program: </font><a
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<h4 align="center"><font color="#00006A">Authors of the program: </font><a |
href="http://sauvy.ined.fr/~brouard"><font color="#00006A">Nicolas
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href="http://sauvy.ined.fr/~brouard"><font color="#00006A">Nicolas |
Brouard</font></a><font color="#00006A">, senior researcher at
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Brouard</font></a><font color="#00006A">, senior researcher at |
the </font><a href="http://www.ined.fr"><font color="#00006A">Institut
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the </font><a href="http://www.ined.fr"><font color="#00006A">Institut |
National d'Etudes Démographiques</font></a><font color="#00006A">
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National d'Etudes Démographiques</font></a><font color="#00006A"> |
(INED, Paris) in the "Mortality, Health and Epidemiology
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(INED, Paris) in the "Mortality, Health and Epidemiology |
Research Unit" </font></h4>
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Research Unit" </font></h4> |
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<h4 align="center"><font color="#00006A">and Agnès Lièvre (PHD student at INED)</font></h4>
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<h4 align="center"><font color="#00006A">and Agnès Lièvre (former PHD student at INED)</font></h4> |
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<h4><font color="#00006A">Contribution to the mathematics: C. R.
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<h4><font color="#00006A">Contribution to the mathematics: C. R. |
Heathcote </font><font color="#00006A" size="2">(Australian
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Heathcote </font><font color="#00006A" size="2">(Australian |
National University, Canberra).</font></h4>
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National University, Canberra).</font></h4> |
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<h4><font color="#00006A">Contact: Agnès Lièvre (</font><a
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<h4><font color="#00006A">Contact: Nicolas Brouard (</font><a |
href="mailto:lievre@ined.fr"><font color="#00006A"><i>lievre@ined.fr</i></font></a><font
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href="mailto:brouard@ined.fr"><font color="#00006A"><i>brouard@ined.fr</i></font></a><font |
color="#00006A">) </font></h4>
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color="#00006A">) </font></h4> |
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<p> Main publication concerning the method is
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<p> Main publication concerning the method is |
<a href=http://taylorandfrancis.metapress.com/app/home/contribution.asp?wasp=1f99bwtvmk5yrb7hlhw3&referrer=parent&backto=issue,1,2;journal,2,5;linkingpublicationresults,1:300265,1
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<a href=http://dx.doi.org/10.1080/713644739>Lièvre A., Brouard N. and Heathcote Ch. (2003) Estimating Health Expectancies |
>Lièvre A., Brouard N. and Heathcote Ch. (2003) Estimating Health Expectancies
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from Cross-longitudinal surveys. <em>Mathematical Population Studies</em>.- 10(4), pp. 211-248. DOI 10.1080/713644739</a> |
from Cross-longitudinal surveys. <em>Mathematical Population Studies</em>.- 10(4), pp. 211-248</a>
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</p>
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<h2><font color="#EC5E5E"><strong>Download and instructions for installation</strong></font></h2> |
<h2><font color="#EC5E5E"><strong>Download and instructions for installation</strong></font></h2>
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<h3> Current versions August 2014 </h3> |
<h3>On Windows (win9X, 2000, XP)</h3>
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<ul> |
<p> Until June 2004 the installation did consist in a zip file which
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<li>On Windows (win9X, 2000, XP, Vista, Windows 7, Windows 8): 0.98nV</li> |
had to be extracted in the directory of your choice. But with version
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<li>On MacOS/X Leopard: 0.98nV</li> |
0.97b IMaCh we are using a windows installer (Inno setup). Both
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<li>On Linux, ask for the CVS version </li> |
executables <tt>imach.exe</tt> and <tt>gnuplot.exe</tt> (the grapher
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</ul> |
that we are using) have to be on the same directory.
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The grapher that IMaCh uses is gnuplot |
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from <a href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>. |
<br> In order to facilitate the use of IMaCh we associated the .imach
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Gnuplot has evolved since version IMaCh 0.98k and therefore you need |
extension to two features: editing and running. Thus by right clicking
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at least Gnuplot 4.6. Otherwise you need to adapt the .gp file |
on a foo.imach file you can either 'edit'the file (default) with
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produced in order to run with your old gnuplot. |
the notepad editor or 'run' it with gnuplot (you need a recent version).<br>
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With the installer provided for OS/X and Windows, a recent gnuplot |
But we discovered that on some computers, people are not allowed
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binary is provided and will be installed on the same directory that |
to modify the windows registry and need to have Administrator privileges.
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the IMaCh binary. It is better to use your own Gnuplot installation |
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and IMaCh will test the command '''gnuplot''' but if the binary in not |
<br>
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in your path, it will make a error but will use the binary provided by |
Thus we built two windows installer: a standard setup which will install
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the installers. Using recent gnuplot installations, there is usually a |
the progam (usually in <tt>\Program Files\imach</tt> and will
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possibility to add the gnuplot binary in your path. |
modify the registry to associate <tt>.imach</tt> extension to notepad and imach, and a
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second which will not alter the registry. With this second installer you
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<h3>On Windows (win9X, 2000, XP, Vista, Windows 7, Windows 8)</h3> |
will be able to install the programs in your home directory and
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<p> Until June 2004 the installation did consist in a zip file which |
run it by clicking on the imach.exe icon. But you won't be able
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had to be extracted in the directory of your choice. But with version |
to use the facility of the right clicking.
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0.98d and above IMaCh we are using a windows installer (Inno setup). |
</p>
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<br> In order to facilitate the use of IMaCh we associated the .imach |
<ul>
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extension to two features: editing and running. Thus by right clicking |
<li>Download latest <font size="2" face="Courier New"><strong>imach-0.97b-setup.exe</strong></font>
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on a foo.imach file you can either 'edit'the file (default) with |
and execute it .</li>
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the notepad editor or 'run' it with gnuplot (you need a recent version).<br> |
<li>Different sub-directories are created:
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<ul>
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But we discovered that on some computers, people are not allowed |
<li>doc: most of the documentation. The main document
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to modify the windows registry and need to have Administrator privileges. |
is <a href="doc/imach.htm">doc/imach.htm</a> .</li>
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<ul> Here are also two data files:<font size="4"
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<br> |
face="Times New Roman"> </font><ul>
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Thus we built two windows installer: a standard setup which will install |
<li><font face="Courier New">data1.txt</font>
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the progam (usually in <tt>\Program Files\imach</tt> and will |
which is the main data file on which the
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modify the registry to associate <tt>.imach</tt> extension to notepad and imach, and a |
program has been run as the example in
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second which will not alter the registry. With this second installer you |
the main documentation.</li>
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will be able to install the programs in your home directory and |
<li><font face="Courier New">mydata.txt </font>a
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run it by clicking on the imach.exe icon. But you won't be able |
smaller data file which you can use for
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to use the facility of the right clicking. |
your own trial.</li>
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</p> |
</ul>
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</ul>
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<ul> |
<li>bin: <ul> <li><font face="Courier">imach.exe</font>
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<li>Download latest <font size="2" face="Courier |
the executable for Windows 95/98/NT compiled with gcc from
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New"><strong>imach-0.98nX-1-setup.exe</strong></font> and |
cygwin.</li> <li> gnuplot, the grapher use by IMaCh. Its
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execute it .</li> |
reference manual and sources can be accessed from <a
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<li> Download <font size="2" face="Courier |
href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>.
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New"><strong>gnuplot</strong></font> 4.6.5 |
</ul>
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at <a href="http://www.gnuplot.info/">http://www.gnuplot.info/</a> |
</li>
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; at the end of the install it is asked if you want to have the |
<li>src: This subdirectory contains the source of the
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gnuplot binary in your path, say yes.</li> |
program. It can be obtained by asking us by mail <a
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<li>Different sub-directories are created: |
href="mailto:brouard@ined.fr">mailto:brouard@ined.fr</a>
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<ul> |
and <a href="mailto:lievre@ined.fr">mailto:lievre@ined.fr</a>
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<li>doc: most of the documentation. The main document |
.</li>
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is <a href="wiki/index.php/Documentation">http://euroreves.ined.fr/imach/wiki/index.php/Documentation</a> |
</ul>
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.</li> |
</li>
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<ul> Here are also two data files:<font size="4" |
<li>Right click on the .imach to either edit it or execute it with Imach.</li>
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face="Times New Roman"> </font><ul> |
<li>Read the file README.txt or, better, click on <a
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<li><font face="Courier New">data1.txt</font> |
href="doc/imach.htm">doc/imach.htm</a></li>
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which is the main data file on which the |
</ul>
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program has been run as the example in |
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the main documentation.</li> |
<br>
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<li><font face="Courier New">mydata.txt </font>a |
Imach version 0.97b of June 21 2004 can be downloaded as a setup.exe file
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smaller data file which you can use for |
<a href=imach-0.97b-2-setup.exe">
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your own trial.</li> |
http://euroreves.ined.fr/imach/imach-0.97b-2-setup.exe</a>. The IMaCh
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</ul> |
program and gnuplot will be installed in the directory that you want
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</ul> |
(usually in Program Files). We made some errors in the new setup and
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<li>bin: <ul> |
some erlier versions did not work. Please check the md5sum which is
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<li><font face="Courier">imach.exe</font></li> |
3cb42bf71396d531d4bc3d42fee46a52 imach-0.97b-2-setup.exe
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<li> gnuplot, the grapher used by IMaCh. Its |
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reference manual and sources can be accessed from <a |
<br>We also changed the wordpad editor to notepad which is less useful
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href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>. |
but exists on most Windows installation. <br> For people who are not
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</ul> |
allowed to modify the registry of their Windows installation here is a
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</li> |
second setup <a
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<li>src: This subdirectory contains the source of the |
href="imach-0.97b-2-noreg-setup.exe">imach-0.97b-2-noreg-setup.exe</a>.
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program. It can be obtained by asking us by mail brouard at ined pointfr |
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.</li> |
<p><a href="oldversions.html">Old Windows versions are accessible here.</a>
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</ul> |
<h3>On Mac OS/X</h3>
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</li> |
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<li>Right click on the .imach to either edit it or execute it with |
IMaCh can be easily compiled with gcc 3.3 on MacIntosh as soon as
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IMaCh. At the end of the program, IMaCh uses gnuplot to produce |
XCode (free download from Apple) is intalled on your MaCIntosh.<p>
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the graphs, then you can open your browser to read the main .htm |
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file with all results and graphs. If gnuplot is not installed or |
It take a litle more time to get latest version of Gnuplot 4.0 for Mac
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not in your path, you have to run gnuplot on the ".gp" source file |
OS/X and to compile it on a MaC. The main problem resides in finding
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generated by imach. Using wgnuplot you have to "open" it. </li> |
the png library. Gif images are patented now and the replacement is
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<li>Read the file README.txt |
png, but the development of the png library is growing on its own and
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</ul> |
you just have to find on Google where it is hosted now.
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<br> |
<br>
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Imach version 0.98nX of August 2014 can be downloaded as a setup.exe file |
Gnuplot can be easily compiled on a MaC, but I don't know yet (July
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<a href="imach-0.98nX-1-setup.exe"> |
2004) which is default screen terminal driver for gnuplot. For sure if
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http://euroreves.ined.fr/imach/imach-0.98nX-1-setup.exe (compiled with |
X11 is installed on your MaC (it is included on your installation CD
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free Visual Studio compiler 2010 32 bits)</a>. If MSVCR100.dll is |
or you can download it from the WEB), the you can do <tt>set ter
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missing on your windows system (32 or 64 bits) please download the |
X11</tt> and <tt>plot sin(x)</tt> to get a nice sin curve on an X11
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library from Microsoft.com by installing |
window of your Mac.
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the <a href="http://www.microsoft.com/en-us/download/details.aspx?id=8328">32Bit: |
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Microsoft Visual C++ 2010 SP1 Redistributable Package (x86)</a>. The |
<br> Let me add that for running IMaCh with all of its features, you don't
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IMaCh program and gnuplot will be installed in the directory that you |
need X11; the gnuplot program included in the distribution needs only
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want (usually in Program Files). Please check the md5sum which is |
to have the png terminal driver to output graphs and these graphs will
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f801319e8dbc852296e4fba13029c7e0 imach-0.98nX-1-setup.exe |
be viewed by your browser.<br>
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<br>After installation a right click on a .imach file lets edit with |
You need X11 only if you want to modify and test the gnuplot code output by
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the notepad text editor which is less useful than other text editor |
ImaCh, because it might be a more convenient way to view the graphs
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like workpad but exists on most Windows installation. <br> For people |
directly on the screen than writing images on a file and viewing them
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who are not allowed to modify the registry of their Windows |
with a browser,
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installation here is a second |
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setup <a href="imach-0.98nX-1-noreg-setup.exe">imach-0.98nX-1-noreg-setup.exe</a>. |
<p>
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<br> |
You can download a .pkg.pax file at <a
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766443598a014e8d9cf5cbaccab99e0d imach-0.98nX-1-noreg-setup.exe |
href="imach097b.pkg.pax">imach097b.pkg.pax</a>. Stuffit
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<p> The executable for Windows cross-compiled on OS/X with |
Expander will expand the compressed file into a imach097b.pkg directory. Just
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i386-mingw32-gcc doesn't produce efficient binary compared to native |
clicking on the directory will let you install IMaCh in a local
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Visual Studio 2010 (used here). imach-0.98nV-1-setup.exe is compiled |
directory of your own (you have to create a new folder name IMaCh097b or whatever). Two sub-directories are created
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with i386-mingw32-gcc . |
<tt>bin</tt> and <tt>html</tt> . In the bin subdirectory you
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will find two executables <tt>imach</tt> itself and
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<p><a href="oldversions.html">Old Windows versions are accessible here.</a> |
<tt>gnuplot</tt>.
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<h3>On Mac OS/X Leopard (August 2014)</h3> |
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<p>
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IMaCh can be easily compiled with gcc 3.3 on MacIntosh as soon as |
You need to click on <tt>imach</tt> and IMaCh will be launched in a
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XCode (free download from Apple) is intalled on your MaCIntosh.<p> |
terminal window, asking you to enter a <tt>parameter</tt> file. A
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parameter file is text file with an extension <tt>.imach</tt>
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It take a litle more time to get version of Gnuplot 4.6.5+ for Mac OS/X |
(but you can use a <tt>.txt</tt> extension if you want. Among
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and to compile it on a MaC. Currently graphs are output as png |
the parameters required, a data file name has to be entered. It
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files. We will probably moved to svg because the svg format is |
can be a relative file name like
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scalable and thus figures are easier to improve and insert in other documents. |
<tt>../../data/data1.txt</tt>. It might also work if you use the
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Windows backslash "<tt>\</tt>" syntax.
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<p>
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<p> |
At the end of the run, and it order for the terminal window not to
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You can download a dmg file |
disappear, the program will prompt for a command like "<tt>e</tt>" for
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at <a href="imach0.98nX.dmg">imach0.98nX.dmg</a> (md5sum |
edit or "<tt>q</tt>" for quit. The edit command might not work
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ff9d2389abc2d3ce106203d89fd096d4). Like on Windows, two |
on a MaC, or on Unix or even on recent Windows, because the program should know which
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sub-directories are created |
browser you are using and becauee the BROWSER environment
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<tt>bin</tt> and <tt>html</tt> . In the bin subdirectory you |
doesn't seem to be standard on a Mac and on some other OS too.
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will find two executables <tt>imach</tt> itself and |
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<tt>gnuplot</tt>. |
<br> The consequence for you is just that you have to use your finder
|
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or browser (there is no more difference now) and click on the
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<p> |
<tt>.html</tt> (or .htm) file created. The filename of this html
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You need to click on <tt>imach</tt> application and IMaCh will be |
file is the same name as your parameter file, only the extension
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launched in a Terminal window, asking you to enter |
.imach is changed to .html.
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a <tt>parameter</tt> file. A parameter file is a text file with an |
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extension <tt>.imach</tt> (but you can use a <tt>.txt</tt> extension |
<h3>On Linux</h3> There are various versions of Linux, gnuplot is
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if you want. Among the parameters required, a data file name has to |
distributed on most distributions. Just verify that your version of
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be entered. It can be a relative file name |
gnuplot is more recent than version 0.38i . I haven't had time to make
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like <tt>../../data/data1.txt</tt>. <br> If you open a new finder you |
a rpm yet, just ask us for the CVS tree location (not completely GPL
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can drag an IMaCh parameter file into the terminal IMaCh Window that |
today), and compile the sources. Remarks concerning the Linux versions
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you just created. |
are similar to the Mac OS/X version. A binary rpm will be given as
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<p> |
soon as a src rpm will be given which means that the whole program
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At the end of the run, and it order for the terminal window not to |
will be GPL licensed.
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disappear, the program will prompt for a command like "<tt>e</tt>" for |
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edit (with your browser) or "<tt>q</tt>" for quit. |
<p><a href="doc/imach.htm"><font color="#FF0000" size="6">Click
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here to access to the detailed documentation</font></a></p>
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<br> The consequence for you is just that you have to use your finder |
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or browser (there is no more difference now) and click on the |
<p>This software have been partly granted by <a
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<tt>.html</tt> (or .htm) file created. The filename of this html |
href="http://euroreves.ined.fr">Euro-REVES</a>, a concerted action
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file has the same name as your parameter file, only the extension |
from the European Union. In 2003-2004 it has been granted by the
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.imach is changed to .html. |
French Institute on Longevity. Our work is copyrighted as a GNU
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software product, i.e. program and software can be distributed freely
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<h3>On Linux</h3> There are various versions of Linux, gnuplot is |
for non commercial use, but actually some sources are not widely
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distributed on most distributions. Just verify that your version of |
distributed today because they borrow some codes from the book
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gnuplot is more recent than version 4.6.5 . I haven't had time to make |
"Numerical Recipes in C" which is copyrighted. If you are an owner of
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a rpm yet, just ask us for the CVS tree location (not completely GPL |
theses sources you can get our sources by asking us with a simple
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today), and compile the sources. Remarks concerning the Linux versions |
justification (name, email, Institute) <a
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are similar to the Mac OS/X version. |
href="mailto:imach-dev@listes.ined.fr">mailto:imach-dev@listes.ined.fr</a>
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<p> |
</p>
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<font color="#FF0000" size="3"><tt>New (August 2014)</tt></font> You |
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can download a binary tar file for respectively a 32 bits or 64 bits |
<p>Today we are two developpers only but we already use a private CVS
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Linux box:<p> |
server. The CVS server will be freely accessible as soon as we have
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cf9784f1d3f464b2f0c7ddf2fea84062 <a href="imach-Linux-0.98nX-linux-i586-bin.tar.bz2">imach-Linux-0.98nX-linux-i586-bin.tar.bz2</a><p> |
replaced "Numerical Recipes in C maximization routines" with
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or |
equivalent routines from the new GNU scientific library.
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0974bcf30596f94f97d0e80acaf5a1bb <a href="imach-Linux-0.98nX-linux-x86-64-bin.tar.bz2">imach-Linux-0.98nX-linux-x86-64-bin.tar.bz2</a> <p> |
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The binaries have been crosscompiled with gcc on my OS/X Mac. Each |
<p>Latest documentation can be accessed at <a
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binary contains two directories <tt>bin</tt> and <tt>html/doc</tt> |
href="http://euroreves.ined.fr/imach">http://euroreves.ined.fr/imach</a><br>
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. In the bin subdirectory you will find the <tt>imach</tt> executable |
</p>
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and in <tt>html/doc</tt> the <tt>biaspar.imach</tt> test parameter |
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file and its corresponding data file <tt>data1.txt</tt>. In order to |
<p> There is a public mailing list of IMaCh's users. You can
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run the test the command is <tt>./bin/imach |
subscribe by sending a mail to <a
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./html/doc/biaspar.imach</tt> <p> |
href=mailto:imach-users-subscribe@listes.ined.fr>imach-users-subscribe@listes.ined.fr</a>
|
<tt>gnuplot</tt> should be installed otherwise at the end of the |
(and unsubscribe with <a
|
run (optimization and calculations last at least 7 minutes on |
href=mailto:imach-users-unsubscribe@listes.ined.fr>imach-users-unsubscribe@listes.ined.fr</a>
|
today most efficient hardwares) the command <tt>gnuplot |
</p>
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biaspar.gp</tt> will fail. If successful, typing <tt>e</tt> will |
<br>$Id$<br>
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open <tt>biaspar.htm</tt> with your browser and all the results |
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including graphs generated by gnuplot will appear. Please |
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subscribe to the mailing |
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list <tt>imach-users@listes.ined.fr</tt> for comments and |
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reports on the performance (see the Performance section of |
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the <a href="http://euroreves.ined.fr/imach/wiki">wiki</a>). |
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<p><a href="http://euroreves.ined.fr/imach/wiki/index.php/Documentation"><font color="#FF0000" size="6">Click |
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here to access to the detailed documentation</font></a></p> |
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<p>This software have been partly granted |
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by <a href="http://euroreves.ined.fr">Euro-REVES</a>, a concerted |
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action from the European Union. In 2003-2004 it has been granted by |
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the French Institute on Longevity. In January 2014, it has been |
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granted by the Japan Society for the Promotion of Science |
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(Grant-in-Aid for Scientific Research 25293121. |
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<p> |
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Our work is copyrighted as a GNU software product, i.e. program and |
|
software can be distributed freely for non commercial use, but |
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actually some sources are not widely distributed today because they |
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borrow some codes from the book "Numerical Recipes in C" which is |
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copyrighted. If you are an owner of theses sources you can get our |
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sources by asking us with a simple justification (name, email, |
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Institute) <a href="mailto:imach-dev@listes.ined.fr">mailto:imach-dev@listes.ined.fr</a> |
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</p> |
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<p>Today we are two developpers only but we already use a private CVS |
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server. The CVS server will be freely accessible as soon as we have |
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replaced "Numerical Recipes in C maximization routines" with |
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equivalent routines from the new GNU scientific library. |
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<p>Latest documentation can be accessed at <a |
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href="http://euroreves.ined.fr/imach/wiki/index.php/Documentation">http://euroreves.ined.fr/imach/wiki/index.php/Documentation</a><br> |
|
|
|
<p> There is a public mailing list of IMaCh's users. You can |
|
subscribe by sending a mail to <a |
|
href=mailto:imach-users-subscribe@listes.ined.fr>imach-users-subscribe@listes.ined.fr</a> |
|
(and unsubscribe with <a |
|
href=mailto:imach-users-unsubscribe@listes.ined.fr>imach-users-unsubscribe@listes.ined.fr</a> |
|
</p> |
|
|
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<h2>IMaCh Wiki</h2> |
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As discussed at the REVES meeting in <a href="http://www.prw.le.ac.uk/cgi-bin/reves/2005.cgi">Beijing</a>, we created a Wiki for IMaCh were people having used IMaCh (or having not been able to use it because of obscure or unadequate features) can add tips and discuss various aspects of IMaCh and interface with other statistical softwares. In many aspects, our "official documentation" is not accurate enough. |
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<p> Wikis are a very promising way to give information closer to your expectations. It also a very dynamic movement if you consider the first <a href="http://wikimania.wikimedia.org/wiki/Main_Page">International Wikimedia Conference in Francfurt</a> (August 2005), where most Wikis were represented and in particular <a href="http://wikipedia.org">Wikipedia</a>. |
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<p><a href="wiki"><font color="#FF0000" size="6">Access to the IMaCh Wiki</font></a></p>. Please ask for a username and password. |
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