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 <h1 align="center"><font color="#00006A">Computing Health  <h1 align="center"><font color="#00006A">Computing Health
 Expectancies using IMaCh</font></h1>  Expectancies using IMaCh</font></h1>
 <h1 align="center"><font color="#00006A" size="5">(a Maximum  <h1 align="center"><font color="#00006A" size="5">(a Maximum
 Likelihood Computer Program using Interpolation of Markov Chains)</font></h1>  Likelihood Computer Program using Interpolation of Markov Chains)</font></h1>
   
 <p align="center"><a href="http://www.ined.fr/"><img  <p align="center"><a href="http://www.ined.fr/"><img
 src="doc/logo-ined.gif" border="0" width="151" height="76"></a><img  src="doc/logo-ined.gif" border="0" width="151" height="76"></a><img
 src="doc/euroreves2.gif" width="151" height="75"></p>  src="doc/euroreves2.gif" width="151" height="75"></p>
   
 <h3 align="center"><a href="http://www.ined.fr/"><font  <h3 align="center"><a href="http://www.ined.fr/"><font
 color="#00006A">INED</font></a><font color="#00006A"> and </font><a  color="#00006A">INED</font></a><font color="#00006A"> and </font><a
 href="http://euroreves.ined.fr"><font color="#00006A">EUROREVES</font></a></h3>  href="http://euroreves.ined.fr"><font color="#00006A">EUROREVES</font></a></h3>
   
 <p align="center"><font color="#00006A" size="4"><strong>June 2004</strong></font></p>  <p align="center"><font color="#00006A" size="4"><strong>August 2014</strong></font></p>
   
 <hr size="3" color="#EC5E5E">  <hr size="3" color="#EC5E5E">
   
 <h4 align="center"><font color="#00006A">Authors of the program: </font><a  <h4 align="center"><font color="#00006A">Authors of the program: </font><a
 href="http://sauvy.ined.fr/~brouard"><font color="#00006A">Nicolas  href="http://sauvy.ined.fr/~brouard"><font color="#00006A">Nicolas
 Brouard</font></a><font color="#00006A">, senior researcher at  Brouard</font></a><font color="#00006A">, senior researcher at
 the </font><a href="http://www.ined.fr"><font color="#00006A">Institut  the </font><a href="http://www.ined.fr"><font color="#00006A">Institut
 National d'Etudes Démographiques</font></a><font color="#00006A">  National d'Etudes Démographiques</font></a><font color="#00006A">
 (INED, Paris) in the "Mortality, Health and Epidemiology  (INED, Paris) in the "Mortality, Health and Epidemiology
 Research Unit" </font></h4>  Research Unit" </font></h4>
   
 <h4 align="center"><font color="#00006A">and Agnès Lièvre (PHD student at INED)</font></h4>  <h4 align="center"><font color="#00006A">and Agnès Lièvre (former PHD student at INED)</font></h4>
   
 <h4><font color="#00006A">Contribution to the mathematics: C. R.  <h4><font color="#00006A">Contribution to the mathematics: C. R.
 Heathcote </font><font color="#00006A" size="2">(Australian  Heathcote </font><font color="#00006A" size="2">(Australian
 National University, Canberra).</font></h4>  National University, Canberra).</font></h4>
   
 <h4><font color="#00006A">Contact: Agnès Lièvre (</font><a  <h4><font color="#00006A">Contact: Nicolas Brouard (</font><a
 href="mailto:lievre@ined.fr"><font color="#00006A"><i>lievre@ined.fr</i></font></a><font  href="mailto:brouard@ined.fr"><font color="#00006A"><i>brouard@ined.fr</i></font></a><font
 color="#00006A">) </font></h4>  color="#00006A">) </font></h4>
   
 <p> Main publication concerning the method is  <p> Main publication concerning the method is 
 <a href=http://taylorandfrancis.metapress.com/app/home/contribution.asp?wasp=1f99bwtvmk5yrb7hlhw3&referrer=parent&backto=issue,1,2;journal,2,5;linkingpublicationresults,1:300265,1  <a href=http://dx.doi.org/10.1080/713644739>Lièvre A., Brouard N. and Heathcote Ch. (2003) Estimating Health Expectancies 
 >Lièvre A., Brouard N. and Heathcote Ch. (2003) Estimating Health Expectancies  from Cross-longitudinal surveys. <em>Mathematical Population Studies</em>.- 10(4), pp. 211-248. DOI 10.1080/713644739</a>
 from Cross-longitudinal surveys. <em>Mathematical Population Studies</em>.- 10(4), pp. 211-248</a>  </p>
 </p>  
   <h2><font color="#EC5E5E"><strong>Download and instructions for installation</strong></font></h2>
 <h2><font color="#EC5E5E"><strong>Download and instructions for installation</strong></font></h2>  
   <h3> Current versions August 2014 </h3>
 <h3>On Windows (win9X, 2000, XP)</h3>  <ul>
 <p> Until June 2004 the installation did consist in a zip file which  <li>On Windows (win9X, 2000, XP, Vista, Windows 7, Windows 8): 0.98nV</li>
 had to be extracted in the directory of your choice. But with version  <li>On MacOS/X Leopard: 0.98nV</li>
 0.97b IMaCh we are using a windows installer (Inno setup).  Both  <li>On Linux, ask for the CVS version </li>
 executables <tt>imach.exe</tt> and <tt>gnuplot.exe</tt> (the grapher  </ul>
 that we are using) have to be on the same directory.  The grapher that IMaCh uses is gnuplot
   from <a href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>.
 <br> In order to facilitate the use of IMaCh we associated the .imach  Gnuplot has evolved since version IMaCh 0.98k and therefore you need
 extension to two features: editing and running. Thus by right clicking  at least Gnuplot 4.6. Otherwise you need to adapt the .gp file
 on a foo.imach file you can either 'edit'the file (default) with  produced in order to run with your old gnuplot.
 the notepad editor or 'run' it with gnuplot (you need a recent version).<br>  
   With the installer provided for OS/X and Windows, a recent gnuplot
       But we discovered that on some computers, people are not allowed  binary is provided and will be installed on the same directory that
       to modify the windows registry and need to have Administrator privileges.  the IMaCh binary.  It is better to use your own Gnuplot installation
   and IMaCh will test the command '''gnuplot''' but if the binary in not
      <br>  in your path, it will make a error but will use the binary provided by
       Thus we built two windows installer: a standard setup which will install  the installers. Using recent gnuplot installations, there is usually a
       the progam (usually in <tt>\Program Files\imach</tt> and will  possibility to add the gnuplot binary in your path.
       modify the registry to associate <tt>.imach</tt> extension to notepad and imach, and a  
       second which will not alter the registry. With this second installer you  <h3>On Windows (win9X, 2000, XP, Vista, Windows 7, Windows 8)</h3>
       will be able to install the programs in your home directory and  <p> Until June 2004 the installation did consist in a zip file which
       run it by clicking on the imach.exe icon. But you won't be able  had to be extracted in the directory of your choice. But with version
       to use the facility of the right clicking.  0.98d and above IMaCh we are using a windows installer (Inno setup).
 </p>  
   <br> In order to facilitate the use of IMaCh we associated the .imach
 <ul>  extension to two features: editing and running. Thus by right clicking
     <li>Download latest <font size="2" face="Courier New"><strong>imach-0.97b-setup.exe</strong></font>  on a foo.imach file you can either 'edit'the file (default) with
         and execute it .</li>  the notepad editor or 'run' it with gnuplot (you need a recent version).<br>
     <li>Different sub-directories are created:  
           <ul>        But we discovered that on some computers, people are not allowed
             <li>doc: most of the documentation. The main document        to modify the windows registry and need to have Administrator privileges.
                 is <a href="doc/imach.htm">doc/imach.htm</a> .</li>  
                 <ul> Here are also two data files:<font size="4"       <br>
                 face="Times New Roman"> </font><ul>        Thus we built two windows installer: a standard setup which will install
                     <li><font face="Courier New">data1.txt</font>        the progam (usually in <tt>\Program Files\imach</tt> and will
                         which is the main data file on which the        modify the registry to associate <tt>.imach</tt> extension to notepad and imach, and a
                         program has been run as the example in        second which will not alter the registry. With this second installer you
                         the main documentation.</li>        will be able to install the programs in your home directory and
                     <li><font face="Courier New">mydata.txt </font>a        run it by clicking on the imach.exe icon. But you won't be able
                         smaller data file which you can use for        to use the facility of the right clicking.
                         your own trial.</li>  </p>
                 </ul>  
                </ul>  <ul>
             <li>bin: <ul> <li><font face="Courier">imach.exe</font>      <li>Download latest <font size="2" face="Courier
             the executable for Windows 95/98/NT compiled with gcc from          New"><strong>imach-0.98nX-1-setup.exe</strong></font> and
             cygwin.</li> <li> gnuplot, the grapher use by IMaCh.  Its          execute it .</li>
             reference manual and sources can be accessed from <a      <li> Download <font size="2" face="Courier
             href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>.      New"><strong>gnuplot</strong></font> 4.6.5
                 </ul>      at <a href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>
             </li>      ; at the end of the install it is asked if you want to have the
             <li>src: This subdirectory contains the source of the      gnuplot binary in your path, say yes.</li>
                 program. It can be obtained by asking us by mail <a      <li>Different sub-directories are created:
                 href="mailto:brouard@ined.fr">mailto:brouard@ined.fr</a>            <ul>
                 and <a href="mailto:lievre@ined.fr">mailto:lievre@ined.fr</a>              <li>doc: most of the documentation. The main document
                 .</li>                  is <a href="wiki/index.php/Documentation">http://euroreves.ined.fr/imach/wiki/index.php/Documentation</a>
         </ul>                  .</li>
     </li>                  <ul> Here are also two data files:<font size="4"
     <li>Right click on the .imach to either edit it or execute it with Imach.</li>                  face="Times New Roman"> </font><ul>
     <li>Read the file README.txt or, better, click on <a                      <li><font face="Courier New">data1.txt</font>
         href="doc/imach.htm">doc/imach.htm</a></li>                          which is the main data file on which the
 </ul>                          program has been run as the example in
                           the main documentation.</li>
 <br>                      <li><font face="Courier New">mydata.txt </font>a
 Imach version 0.97b of June 21 2004 can be downloaded as a setup.exe file                          smaller data file which you can use for
 <a href=imach-0.97b-2-setup.exe">                          your own trial.</li>
 http://euroreves.ined.fr/imach/imach-0.97b-2-setup.exe</a>. The IMaCh                  </ul>
 program and gnuplot will be installed in the directory that you want                 </ul>
 (usually in Program Files).  We made some errors in the new setup and              <li>bin: <ul> 
 some erlier versions did not work. Please check the md5sum which is                  <li><font face="Courier">imach.exe</font></li> 
 3cb42bf71396d531d4bc3d42fee46a52 imach-0.97b-2-setup.exe                  <li> gnuplot, the grapher used by IMaCh.  Its
               reference manual and sources can be accessed from <a
 <br>We also changed the wordpad editor to notepad which is less useful              href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>.
 but exists on most Windows installation.  <br> For people who are not                  </ul>
 allowed to modify the registry of their Windows installation here is a              </li>
 second setup <a              <li>src: This subdirectory contains the source of the
 href="imach-0.97b-2-noreg-setup.exe">imach-0.97b-2-noreg-setup.exe</a>.                  program. It can be obtained by asking us by mail brouard at ined pointfr
                    .</li>
 <p><a href="oldversion.html">Old Windows versions are accessible here.</a>          </ul>
 <h3>On Mac OS/X</h3>      </li>
       <li>Right click on the .imach to either edit it or execute it with
 IMaCh can be easily compiled with gcc 3.3 on MacIntosh as soon as      IMaCh. At the end of the program, IMaCh uses gnuplot to produce
 XCode (free download from Apple) is intalled on your MaCIntosh.<p>      the graphs, then you can open your browser to read the main .htm
       file with all results and graphs. If gnuplot is not installed or
 It take a litle more time to get latest version of Gnuplot 4.0 for Mac      not in your path, you have to run gnuplot on the ".gp" source file
 OS/X and to compile it on a MaC. The main problem resides in finding      generated by imach. Using wgnuplot you have to "open" it. </li>
 the png library. Gif images are patented now and the replacement is      <li>Read the file README.txt
 png, but the development of the png library is growing on its own and  </ul>
 you just have to find on Google where it is hosted now.  
   <br>
 <br>  Imach version 0.98nX of August 2014 can be downloaded as a setup.exe file
 Gnuplot can be easily compiled on a MaC, but I don't know yet (July  <a href="imach-0.98nX-1-setup.exe">
 2004) which is default screen terminal driver for gnuplot. For sure if  http://euroreves.ined.fr/imach/imach-0.98nX-1-setup.exe (compiled with
 X11 is installed on your MaC (it is included on your installation CD  free Visual Studio compiler 2010 32 bits)</a>. If MSVCR100.dll is
 or you can download it from the WEB), the you can do <tt>set ter  missing on your windows system (32 or 64 bits) please download the
 X11</tt> and <tt>plot sin(x)</tt> to get a nice sin curve on an X11  library from Microsoft.com by installing
 window of your Mac.  the <a href="http://www.microsoft.com/en-us/download/details.aspx?id=8328">32Bit:
   Microsoft Visual C++ 2010 SP1 Redistributable Package (x86)</a>. The
 <br> Let me add that for running IMaCh with all of its features, you don't  IMaCh program and gnuplot will be installed in the directory that you
 need X11; the gnuplot program included in the distribution needs only  want (usually in Program Files). Please check the md5sum which is
 to have the png terminal driver to output graphs and these graphs will  f801319e8dbc852296e4fba13029c7e0 imach-0.98nX-1-setup.exe
 be viewed by your browser.<br>  
   <br>After installation a right click on a .imach file lets edit with
 You need X11 only if you want to modify and test the gnuplot code output by  the notepad text editor which is less useful than other text editor
 ImaCh, because it might be a more convenient way to view the graphs  like workpad but exists on most Windows installation.  <br> For people
 directly on the screen than writing images on a file and viewing them  who are not allowed to modify the registry of their Windows
 with a browser,  installation here is a second
   setup <a href="imach-0.98nX-1-noreg-setup.exe">imach-0.98nX-1-noreg-setup.exe</a>.
 <p>  <br>
 You can download a .pkg.paw file at <a  766443598a014e8d9cf5cbaccab99e0d imach-0.98nX-1-noreg-setup.exe
         href="imach097b.pkg.pax">imach097b.pkg.pax</a>. Stuffit  <p> The executable for Windows cross-compiled on OS/X with
       Expander will expand compressed imach097b.pkg directory. Just  i386-mingw32-gcc doesn't produce efficient binary compared to native
       clicking on the directory will let you install ImaCh in a local  Visual Studio 2010 (used here). imach-0.98nV-1-setup.exe is compiled
       directory of your own. Two sub-directories are created  with i386-mingw32-gcc .
       <tt>bin</tt> and <tt>html</tt> . In the bin subdirectory you  
       will find two executables <tt>imach</tt> itself and  <p><a href="oldversions.html">Old Windows versions are accessible here.</a>
       <tt>gnuplot</tt>.  <h3>On Mac OS/X Leopard  (August 2014)</h3>
   
 <p>  IMaCh can be easily compiled with gcc 3.3 on MacIntosh as soon as
 You need to click on <tt>imach</tt> and IMaCh will be launched in a  XCode (free download from Apple) is intalled on your MaCIntosh.<p>
       terminal window, asking you to enter a <tt>parameter</tt> file. A  
       parameter file is text file with an extension <tt>.imach</tt>  It take a litle more time to get version of Gnuplot 4.6.5+ for Mac OS/X
       (but you can use a <tt>.txt</tt> extension if you want. Among  and to compile it on a MaC.  Currently graphs are output as png
       the parameters required, a data file name has to be entered. It  files. We will probably moved to svg because the svg format is
       can be a relative file name like  scalable and thus figures are easier to improve and insert in other documents.
       <tt>../../data/data1.txt</tt>. It might also work if you use the  
       Windows backslash "<tt>\</tt>" syntax.  
 <p>  <p>
 At the end of the run, and it order for the terminal window not to  You can download a dmg file
       disappear, the program prompt for a command like "<tt>e</tt>" for          at <a href="imach0.98nX.dmg">imach0.98nX.dmg</a> (md5sum
       edit or "<tt>q</tt>" for quit. The edit command might not work          ff9d2389abc2d3ce106203d89fd096d4). Like on Windows, two
       on a MaC, or on Unix or even on recent Windows, because the program should know which          sub-directories are created
       browser you are using and becauee the BROWSER environment        <tt>bin</tt> and <tt>html</tt> . In the bin subdirectory you
       doesn't seem to be standard on a Mac and on some other OS too.        will find two executables <tt>imach</tt> itself and
         <tt>gnuplot</tt>. 
 <br> The consequence for you is just that you have to use your finder  
       or browser (there is no more difference now) and click on the  <p>
       <tt>.html</tt> (or .htm) file created. The filename of this html  You need to click on <tt>imach</tt> application and IMaCh will be
       file is the same name as your parameter file, only the extension  launched in a Terminal window, asking you to enter
       .imach is changed to .html.  a <tt>parameter</tt> file. A parameter file is a text file with an
   extension <tt>.imach</tt> (but you can use a <tt>.txt</tt> extension
 <h3>On Linux</h3>  if you want.  Among the parameters required, a data file name has to
 There are various versions of Linux, gnuplot is distributed on most  be entered. It can be a relative file name
     distributions. Just verify that your version is more recent than  like <tt>../../data/data1.txt</tt>. <br> If you open a new finder you
     version 0.38i . I haven't had time to make a rpm yet, just ask us  can drag an IMaCh parameter file into the terminal IMaCh Window that
     for the CVS tree location (not completely GPL today), and compile  you just created.
     the sources. Remarks concerning the Linux versions are similar to  <p>
     the Mac OS/X version.  At the end of the run, and it order for the terminal window not to
   disappear, the program will prompt for a command like "<tt>e</tt>" for
 <p><a href="doc/imach.htm"><font color="#FF0000" size="6">Click  edit (with your browser) or "<tt>q</tt>" for quit.
 here to access to the detailed documentation</font></a></p>  
   <br> The consequence for you is just that you have to use your finder
 <p>This software have been partly granted by <a        or browser (there is no more difference now) and click on the
 href="http://euroreves.ined.fr">Euro-REVES</a>, a concerted action        <tt>.html</tt> (or .htm) file created. The filename of this html
 from the European Union. In 2003-2004 it has been granted by the        file has the same name as your parameter file, only the extension
 French Institute on Longevity. Our work is copyrighted as a GNU        .imach is changed to .html.
 software product, i.e. program and software can be distributed freely  
 for non commercial use, but actually some sources are not widely  <h3>On Linux</h3> There are various versions of Linux, gnuplot is
 distributed today because they borrow some codes from the book  distributed on most distributions. Just verify that your version of
 "Numerical Recipes in C" which is copyrighted. If you are an owner of  gnuplot is more recent than version 4.6.5 . I haven't had time to make
 theses sources you can get our sources by asking us with a simple  a rpm yet, just ask us for the CVS tree location (not completely GPL
 justification (name, email, Institute) <a  today), and compile the sources. Remarks concerning the Linux versions
 href="mailto:imach-dev@listes.ined.fr">mailto:imach-dev@listes.ined.fr</a>  are similar to the Mac OS/X version.
 </p>  <p>
   <font color="#FF0000" size="3"><tt>New (August 2014)</tt></font> You
 <p>Today we are two developpers only but we already use a private CVS  can download a binary tar file for respectively a 32 bits or 64 bits
 server. The CVS server will be freely accessible as soon as we have  Linux box:<p>
 replaced "Numerical Recipes in C maximization routines" with  cf9784f1d3f464b2f0c7ddf2fea84062 <a href="imach-Linux-0.98nX-linux-i586-bin.tar.bz2">imach-Linux-0.98nX-linux-i586-bin.tar.bz2</a><p>
 equivalent routines from the new GNU scientific library.  or
   0974bcf30596f94f97d0e80acaf5a1bb <a href="imach-Linux-0.98nX-linux-x86-64-bin.tar.bz2">imach-Linux-0.98nX-linux-x86-64-bin.tar.bz2</a> <p>
 <p>Latest documentation can be accessed at <a  The binaries have been crosscompiled with gcc on my OS/X Mac.  Each
 href="http://euroreves.ined.fr/imach">http://euroreves.ined.fr/imach</a><br>  binary contains two directories <tt>bin</tt> and <tt>html/doc</tt>
 </p>  . In the bin subdirectory you will find the <tt>imach</tt> executable
   and in <tt>html/doc</tt> the <tt>biaspar.imach</tt> test parameter
 <p> There is a public mailing list of IMaCh's users.  You can  file and its corresponding data file <tt>data1.txt</tt>. In order to
 subscribe by sending a mail to <a  run the test the command is <tt>./bin/imach
 href=mailto:imach-users-subscribe@listes.ined.fr>imach-users-subscribe@listes.ined.fr</a>  ./html/doc/biaspar.imach</tt> <p>
 (and unsubscribe with <a        <tt>gnuplot</tt> should be installed otherwise at the end of the
 href=mailto:imach-users-unsubscribe@listes.ined.fr>imach-users-unsubscribe@listes.ined.fr</a>        run (optimization and calculations last at least 7 minutes on
 </p>        today most efficient hardwares) the command <tt>gnuplot
 <br>$Id$<br>        biaspar.gp</tt> will fail. If successful, typing <tt>e</tt> will
 <!--  $State$        open <tt>biaspar.htm</tt> with your browser and all the results
         including graphs generated by gnuplot will appear. Please
         subscribe to the mailing
         list <tt>imach-users@listes.ined.fr</tt> for comments and
         reports on the performance (see the Performance section of
         the <a href="http://euroreves.ined.fr/imach/wiki">wiki</a>).
   
   
   <p><a href="http://euroreves.ined.fr/imach/wiki/index.php/Documentation"><font color="#FF0000" size="6">Click
   here to access to the detailed documentation</font></a></p>
   
   <p>This software have been partly granted
   by <a href="http://euroreves.ined.fr">Euro-REVES</a>, a concerted
   action from the European Union. In 2003-2004 it has been granted by
   the French Institute on Longevity. In January 2014, it has been
   granted by the Japan Society for the Promotion of Science
   (Grant-in-Aid for Scientific Research 25293121. 
   <p>
   Our work is copyrighted as a GNU software product, i.e. program and
   software can be distributed freely for non commercial use, but
   actually some sources are not widely distributed today because they
   borrow some codes from the book "Numerical Recipes in C" which is
   copyrighted. If you are an owner of theses sources you can get our
   sources by asking us with a simple justification (name, email,
   Institute) <a href="mailto:imach-dev@listes.ined.fr">mailto:imach-dev@listes.ined.fr</a>
   </p>
   
   <p>Today we are two developpers only but we already use a private CVS
   server. The CVS server will be freely accessible as soon as we have
   replaced "Numerical Recipes in C maximization routines" with
   equivalent routines from the new GNU scientific library.
   
   <p>Latest documentation can be accessed at <a
   href="http://euroreves.ined.fr/imach/wiki/index.php/Documentation">http://euroreves.ined.fr/imach/wiki/index.php/Documentation</a><br>
   
   <p> There is a public mailing list of IMaCh's users.  You can
   subscribe by sending a mail to <a
   href=mailto:imach-users-subscribe@listes.ined.fr>imach-users-subscribe@listes.ined.fr</a>
   (and unsubscribe with <a
   href=mailto:imach-users-unsubscribe@listes.ined.fr>imach-users-unsubscribe@listes.ined.fr</a>
   </p>
   
   <h2>IMaCh Wiki</h2>
   As discussed at the REVES meeting in <a href="http://www.prw.le.ac.uk/cgi-bin/reves/2005.cgi">Beijing</a>, we created a Wiki for IMaCh were people having used IMaCh (or having not been able to use it because of obscure or unadequate features) can add tips and discuss various aspects of IMaCh and interface with other statistical softwares. In many aspects, our "official documentation" is not accurate enough.
   
   <p> Wikis are a very promising way to give information closer to your expectations. It also a very dynamic movement if you consider the first <a href="http://wikimania.wikimedia.org/wiki/Main_Page">International Wikimedia Conference in Francfurt</a> (August 2005), where most Wikis were represented and in particular <a href="http://wikipedia.org">Wikipedia</a>.
   
   <p><a href="wiki"><font color="#FF0000" size="6">Access to the IMaCh Wiki</font></a></p>. Please ask for a username and password.
   
   
   
   
   <br>$Id$<br>
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     Revision 1.5  2004/06/22 11:18:20  brouard
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