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<title>Computing Health Expectancies using IMaCh</title>
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<title>Computing Health Expectancies using IMaCh</title> |
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<h1 align="center"><font color="#00006A">Computing Health
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<h1 align="center"><font color="#00006A">Computing Health |
Expectancies using IMaCh</font></h1>
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Expectancies using IMaCh</font></h1> |
<h1 align="center"><font color="#00006A" size="5">(a Maximum
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<h1 align="center"><font color="#00006A" size="5">(a Maximum |
Likelihood Computer Program using Interpolation of Markov Chains)</font></h1>
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Likelihood Computer Program using Interpolation of Markov Chains)</font></h1> |
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<p align="center"><a href="http://www.ined.fr/"><img
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<p align="center"><a href="http://www.ined.fr/"><img |
src="doc/logo-ined.gif" border="0" width="151" height="76"></a><img
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src="doc/logo-ined.gif" border="0" width="151" height="76"></a><img |
src="doc/euroreves2.gif" width="151" height="75"></p>
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src="doc/euroreves2.gif" width="151" height="75"></p> |
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<h3 align="center"><a href="http://www.ined.fr/"><font
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<h3 align="center"><a href="http://www.ined.fr/"><font |
color="#00006A">INED</font></a><font color="#00006A"> and </font><a
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color="#00006A">INED</font></a><font color="#00006A"> and </font><a |
href="http://euroreves.ined.fr"><font color="#00006A">EUROREVES</font></a></h3>
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href="http://euroreves.ined.fr"><font color="#00006A">EUROREVES</font></a></h3> |
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<p align="center"><font color="#00006A" size="4"><strong>June 2004</strong></font></p>
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<p align="center"><font color="#00006A" size="4"><strong>August 2014</strong></font></p> |
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<hr size="3" color="#EC5E5E">
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<hr size="3" color="#EC5E5E"> |
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<h4 align="center"><font color="#00006A">Authors of the program: </font><a
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<h4 align="center"><font color="#00006A">Authors of the program: </font><a |
href="http://sauvy.ined.fr/~brouard"><font color="#00006A">Nicolas
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href="http://sauvy.ined.fr/~brouard"><font color="#00006A">Nicolas |
Brouard</font></a><font color="#00006A">, senior researcher at
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Brouard</font></a><font color="#00006A">, senior researcher at |
the </font><a href="http://www.ined.fr"><font color="#00006A">Institut
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the </font><a href="http://www.ined.fr"><font color="#00006A">Institut |
National d'Etudes Démographiques</font></a><font color="#00006A">
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National d'Etudes Démographiques</font></a><font color="#00006A"> |
(INED, Paris) in the "Mortality, Health and Epidemiology
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(INED, Paris) in the "Mortality, Health and Epidemiology |
Research Unit" </font></h4>
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Research Unit" </font></h4> |
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<h4 align="center"><font color="#00006A">and Agnès Lièvre (PHD student at INED)</font></h4>
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<h4 align="center"><font color="#00006A">and Agnès Lièvre (former PHD student at INED)</font></h4> |
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<h4><font color="#00006A">Contribution to the mathematics: C. R.
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<h4><font color="#00006A">Contribution to the mathematics: C. R. |
Heathcote </font><font color="#00006A" size="2">(Australian
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Heathcote </font><font color="#00006A" size="2">(Australian |
National University, Canberra).</font></h4>
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National University, Canberra).</font></h4> |
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<h4><font color="#00006A">Contact: Agnès Lièvre (</font><a
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<h4><font color="#00006A">Contact: Nicolas Brouard (</font><a |
href="mailto:lievre@ined.fr"><font color="#00006A"><i>lievre@ined.fr</i></font></a><font
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href="mailto:brouard@ined.fr"><font color="#00006A"><i>brouard@ined.fr</i></font></a><font |
color="#00006A">) </font></h4>
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color="#00006A">) </font></h4> |
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<p> Main publication concerning the method is
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<p>Â Main publication concerning the method is |
<a href=http://taylorandfrancis.metapress.com/app/home/contribution.asp?wasp=1f99bwtvmk5yrb7hlhw3&referrer=parent&backto=issue,1,2;journal,2,5;linkingpublicationresults,1:300265,1
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<a href=http://dx.doi.org/10.1080/713644739>Lièvre A., Brouard N. and Heathcote Ch. (2003) Estimating Health Expectancies |
>Lièvre A., Brouard N. and Heathcote Ch. (2003) Estimating Health Expectancies
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from Cross-longitudinal surveys. <em>Mathematical Population Studies</em>.- 10(4), pp. 211-248. DOI 10.1080/713644739</a> |
from Cross-longitudinal surveys. <em>Mathematical Population Studies</em>.- 10(4), pp. 211-248</a>
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</p>
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<h2><font color="#EC5E5E"><strong>Download and instructions for installation</strong></font></h2> |
<h2><font color="#EC5E5E"><strong>Download and instructions for installation</strong></font></h2>
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<h3> Current versions August 2014 </h3> |
<h3>On Windows (win9X, 2000, XP)</h3>
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<ul> |
<p> Until June 2004 the installation did consist in a zip file which
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<li>On Windows (win9X, 2000, XP, Vista, Windows 7, Windows 8): 0.98nV</li> |
had to be extracted in the directory of your choice. But with version
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<li>On MacOS/X Leopard: 0.98nV</li> |
0.97b IMaCh we are using a windows installer (Inno setup). Both
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<li>On Linux, ask for the CVS version </li> |
executables <tt>imach.exe</tt> and <tt>gnuplot.exe</tt> (the grapher
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</ul> |
that we are using) have to be on the same directory.
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The grapher that IMaCh uses is gnuplot |
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from <a href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>. |
<br> In order to facilitate the use of IMaCh we associated the .imach
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Gnuplot has evolved since version IMaCh 0.98k and therefore you need |
extension to two features: editing and running. Thus by right clicking
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at least Gnuplot 4.6. Otherwise you need to adapt the .gp file |
on a foo.imach file you can either 'edit'the file (default) with
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produced in order to run with your old gnuplot. |
the notepad editor or 'run' it with gnuplot (you need a recent version).<br>
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With the installer provided for OS/X and Windows, a recent gnuplot |
But we discovered that on some computers, people are not allowed
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binary is provided and will be installed on the same directory that |
to modify the windows registry and need to have Administrator privileges.
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the IMaCh binary. It is better to use your own Gnuplot installation |
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and IMaCh will test the command '''gnuplot''' but if the binary in not |
<br>
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in your path, it will make a error but will use the binary provided by |
Thus we built two windows installer: a standard setup which will install
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the installers. Using recent gnuplot installations, there is usually a |
the progam (usually in <tt>\Program Files\imach</tt> and will
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possibility to add the gnuplot binary in your path. |
modify the registry to associate <tt>.imach</tt> extension to notepad and imach, and a
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second which will not alter the registry. With this second installer you
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<h3>On Windows (win9X, 2000, XP, Vista, Windows 7, Windows 8)</h3> |
will be able to install the programs in your home directory and
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<p> Until June 2004 the installation did consist in a zip file which |
run it by clicking on the imach.exe icon. But you won't be able
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had to be extracted in the directory of your choice. But with version |
to use the facility of the right clicking.
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0.98d and above IMaCh we are using a windows installer (Inno setup). |
</p>
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<br> In order to facilitate the use of IMaCh we associated the .imach |
<ul>
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extension to two features: editing and running. Thus by right clicking |
<li>Download latest <font size="2" face="Courier New"><strong>imach-0.97b-setup.exe</strong></font>
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on a foo.imach file you can either 'edit'the file (default) with |
and execute it .</li>
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the notepad editor or 'run' it with gnuplot (you need a recent version).<br> |
<li>Different sub-directories are created:
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<ul>
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But we discovered that on some computers, people are not allowed |
<li>doc: most of the documentation. The main document
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to modify the windows registry and need to have Administrator privileges. |
is <a href="doc/imach.htm">doc/imach.htm</a> .</li>
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<ul> Here are also two data files:<font size="4"
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<br> |
face="Times New Roman"> </font><ul>
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Thus we built two windows installer: a standard setup which will install |
<li><font face="Courier New">data1.txt</font>
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the progam (usually in <tt>\Program Files\imach</tt> and will |
which is the main data file on which the
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modify the registry to associate <tt>.imach</tt> extension to notepad and imach, and a |
program has been run as the example in
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second which will not alter the registry. With this second installer you |
the main documentation.</li>
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will be able to install the programs in your home directory and |
<li><font face="Courier New">mydata.txt </font>a
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run it by clicking on the imach.exe icon. But you won't be able |
smaller data file which you can use for
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to use the facility of the right clicking. |
your own trial.</li>
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</p> |
</ul>
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</ul>
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<ul> |
<li>bin: <ul> <li><font face="Courier">imach.exe</font>
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<li>Download latest <font size="2" face="Courier New"><strong>imach-0.98nV-1-setup.exe</strong></font> |
the executable for Windows 95/98/NT compiled with gcc from
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and execute it .</li> |
cygwin.</li> <li> gnuplot, the grapher use by IMaCh. Its
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<li> Download <font size="2" face="Courier |
reference manual and sources can be accessed from <a
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New"><strong>gnuplot</strong></font> 4.6.5 |
href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>.
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at <a href="http://www.gnuplot.info/">http://www.gnuplot.info/</a> |
</ul>
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; at the end of the install it is asked if you want to have the |
</li>
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gnuplot binary in your path, say yes.</li> |
<li>src: This subdirectory contains the source of the
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<li>Different sub-directories are created: |
program. It can be obtained by asking us by mail <a
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<ul> |
href="mailto:brouard@ined.fr">mailto:brouard@ined.fr</a>
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<li>doc: most of the documentation. The main document |
and <a href="mailto:lievre@ined.fr">mailto:lievre@ined.fr</a>
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is <a href="wiki/index.php/Documentation">http://euroreves.ined.fr/imach/wiki/index.php/Documentation</a> .</li> |
.</li>
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<ul> Here are also two data files:<font size="4" |
</ul>
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face="Times New Roman"> </font><ul> |
</li>
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<li><font face="Courier New">data1.txt</font> |
<li>Right click on the .imach to either edit it or execute it with Imach.</li>
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which is the main data file on which the |
<li>Read the file README.txt or, better, click on <a
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program has been run as the example in |
href="doc/imach.htm">doc/imach.htm</a></li>
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the main documentation.</li> |
</ul>
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<li><font face="Courier New">mydata.txt </font>a |
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smaller data file which you can use for |
<br>
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your own trial.</li> |
Imach version 0.97b of June 21 2004 can be downloaded as a setup.exe file
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</ul> |
<a href=imach-0.97b-2-setup.exe">
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</ul> |
http://euroreves.ined.fr/imach/imach-0.97b-2-setup.exe</a>. The IMaCh
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<li>bin: <ul> <li><font face="Courier">imach.exe</font> |
program and gnuplot will be installed in the directory that you want
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the executable for Windows cross-compiled on OS/X with i386-mingw32-gcc |
(usually in Program Files). We made some errors in the new setup and
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</li> <li> gnuplot, the grapher used by IMaCh. Its |
some erlier versions did not work. Please check the md5sum which is
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reference manual and sources can be accessed from <a |
3cb42bf71396d531d4bc3d42fee46a52 imach-0.97b-2-setup.exe
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href="http://www.gnuplot.info/">http://www.gnuplot.info/</a>. |
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</ul> |
<br>We also changed the wordpad editor to notepad which is less useful
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</li> |
but exists on most Windows installation. <br> For people who are not
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<li>src: This subdirectory contains the source of the |
allowed to modify the registry of their Windows installation here is a
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program. It can be obtained by asking us by mail brouard at ined pointfr |
second setup <a
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.</li> |
href="imach-0.97b-2-noreg-setup.exe">imach-0.97b-2-noreg-setup.exe</a>.
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</ul> |
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</li> |
<p><a href="oldversions.html">Old Windows versions are accessible here.</a>
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<li>Right click on the .imach to either edit it or execute it with |
<h3>On Mac OS/X</h3>
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IMaCh. At the end of the program, IMaCh uses gnuplot to produce |
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the graphs, then you can open your browser to read the main .htm |
IMaCh can be easily compiled with gcc 3.3 on MacIntosh as soon as
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file with all results and graphs. If gnuplot is not installed or |
XCode (free download from Apple) is intalled on your MaCIntosh.<p>
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not in your path, you have to run gnuplot on the ".gp" source file |
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generated by imach. Using wgnuplot you have to "open" it. </li> |
It take a litle more time to get latest version of Gnuplot 4.0 for Mac
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<li>Read the file README.txt |
OS/X and to compile it on a MaC. The main problem resides in finding
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</ul> |
the png library. Gif images are patented now and the replacement is
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png, but the development of the png library is growing on its own and
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<br> |
you just have to find on Google where it is hosted now.
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Imach version 0.98nV of August 2014 can be downloaded as a setup.exe file |
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<a href="imach-0.98nV-1-setup.exe"> |
<br>
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http://euroreves.ined.fr/imach/imach-0.98nV-1-setup.exe</a>. The IMaCh |
Gnuplot can be easily compiled on a MaC, but I don't know yet (July
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program and gnuplot will be installed in the directory that you want |
2004) which is default screen terminal driver for gnuplot. For sure if
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(usually in Program Files). Please check the md5sum which is |
X11 is installed on your MaC (it is included on your installation CD
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e5ce179ee1e32d7514be82c0cc19e1fb imach-0.98nV-1-setup.exe |
or you can download it from the WEB), the you can do <tt>set ter
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X11</tt> and <tt>plot sin(x)</tt> to get a nice sin curve on an X11
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<br>We also changed the wordpad editor to notepad which is less useful |
window of your Mac.
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but exists on most Windows installation. <br> For people who are not |
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allowed to modify the registry of their Windows installation here is a |
<br> Let me add that for running IMaCh with all of its features, you don't
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second setup <a |
need X11; the gnuplot program included in the distribution needs only
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href="imach-0.98nV-1-noreg-setup.exe">imach-0.98nV-1-noreg-setup.exe</a>. |
to have the png terminal driver to output graphs and these graphs will
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<br> |
be viewed by your browser.<br>
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3b477ff19fc4607a32b412e9ad977101 imach-0.98nV-1-noreg-setup.exe |
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You need X11 only if you want to modify and test the gnuplot code output by
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ImaCh, because it might be a more convenient way to view the graphs
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<p><a href="oldversions.html">Old Windows versions are accessible here.</a> |
directly on the screen than writing images on a file and viewing them
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<h3>On Mac OS/X Leopard (August 2014)</h3> |
with a browser,
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IMaCh can be easily compiled with gcc 3.3 on MacIntosh as soon as |
<p>
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XCode (free download from Apple) is intalled on your MaCIntosh.<p> |
You can download a .pkg.pax file at <a
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href="imach097b.pkg.pax">imach097b.pkg.pax</a>. Stuffit
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It take a litle more time to get version of Gnuplot 4.6.5+ for Mac OS/X |
Expander will expand the compressed file into a imach097b.pkg directory. Just
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and to compile it on a MaC. Currently graphs are output as png |
clicking on the directory will let you install IMaCh in a local
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files. We will probably moved to svg because the svg format is |
directory of your own (you have to create a new folder name IMaCh097b or whatever). Two sub-directories are created
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scalable and thus figures are easier to improve and insert in other documents. |
<tt>bin</tt> and <tt>html</tt> . In the bin subdirectory you
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will find two executables <tt>imach</tt> itself and
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<tt>gnuplot</tt>.
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<p> |
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You can download a dmg file |
<p>
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at <a href="imach0.98nV.dmg">imach0.98nV.dmg</a> (md5sum |
You need to click on <tt>imach</tt> and IMaCh will be launched in a
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e2256e6bd4e6f944f17b6be366ce375c). Like on Windows, two |
terminal window, asking you to enter a <tt>parameter</tt> file. A
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sub-directories are created |
parameter file is text file with an extension <tt>.imach</tt>
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<tt>bin</tt> and <tt>html</tt> . In the bin subdirectory you |
(but you can use a <tt>.txt</tt> extension if you want. Among
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will find two executables <tt>imach</tt> itself and |
the parameters required, a data file name has to be entered. It
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<tt>gnuplot</tt>. |
can be a relative file name like
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<tt>../../data/data1.txt</tt>. It might also work if you use the
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<p> |
Windows backslash "<tt>\</tt>" syntax.
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You need to click on <tt>imach</tt> application and IMaCh will be |
<p>
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launched in a Terminal window, asking you to enter |
At the end of the run, and it order for the terminal window not to
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a <tt>parameter</tt> file. A parameter file is a text file with an |
disappear, the program will prompt for a command like "<tt>e</tt>" for
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extension <tt>.imach</tt> (but you can use a <tt>.txt</tt> extension |
edit or "<tt>q</tt>" for quit. The edit command might not work
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if you want. Among the parameters required, a data file name has to |
on a MaC, or on Unix or even on recent Windows, because the program should know which
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be entered. It can be a relative file name |
browser you are using and becauee the BROWSER environment
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like <tt>../../data/data1.txt</tt>. <br> If you open a new finder you |
doesn't seem to be standard on a Mac and on some other OS too.
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can drag an IMaCh parameter file into the terminal IMaCh Window that |
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you just created. |
<br> The consequence for you is just that you have to use your finder
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<p> |
or browser (there is no more difference now) and click on the
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At the end of the run, and it order for the terminal window not to |
<tt>.html</tt> (or .htm) file created. The filename of this html
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disappear, the program will prompt for a command like "<tt>e</tt>" for |
file is the same name as your parameter file, only the extension
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edit (with your browser) or "<tt>q</tt>" for quit. |
.imach is changed to .html.
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<br> The consequence for you is just that you have to use your finder |
<h3>On Linux</h3> There are various versions of Linux, gnuplot is
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or browser (there is no more difference now) and click on the |
distributed on most distributions. Just verify that your version of
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<tt>.html</tt> (or .htm) file created. The filename of this html |
gnuplot is more recent than version 0.38i . I haven't had time to make
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file has the same name as your parameter file, only the extension |
a rpm yet, just ask us for the CVS tree location (not completely GPL
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.imach is changed to .html. |
today), and compile the sources. Remarks concerning the Linux versions
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are similar to the Mac OS/X version. A binary rpm will be given as
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<h3>On Linux</h3> There are various versions of Linux, gnuplot is |
soon as a src rpm will be given which means that the whole program
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distributed on most distributions. Just verify that your version of |
will be GPL licensed.
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gnuplot is more recent than version 4.6 . I haven't had time to make |
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a rpm yet, just ask us for the CVS tree location (not completely GPL |
<p><a href="doc/imach.htm"><font color="#FF0000" size="6">Click
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today), and compile the sources. Remarks concerning the Linux versions |
here to access to the detailed documentation</font></a></p>
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are similar to the Mac OS/X version. |
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<p>This software have been partly granted by <a
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<p><a href="http://euroreves.ined.fr/imach/wiki/index.php/Documentation"><font color="#FF0000" size="6">Click |
href="http://euroreves.ined.fr">Euro-REVES</a>, a concerted action
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here to access to the detailed documentation</font></a></p> |
from the European Union. In 2003-2004 it has been granted by the
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French Institute on Longevity. Our work is copyrighted as a GNU
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<p>This software have been partly granted |
software product, i.e. program and software can be distributed freely
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by <a href="http://euroreves.ined.fr">Euro-REVES</a>, a concerted |
for non commercial use, but actually some sources are not widely
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action from the European Union. In 2003-2004 it has been granted by |
distributed today because they borrow some codes from the book
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the French Institute on Longevity. In January 2014, it has been |
"Numerical Recipes in C" which is copyrighted. If you are an owner of
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granted by the Japan Society for the Promotion of Science |
theses sources you can get our sources by asking us with a simple
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(Grant-in-Aid for Scientific Research 25293121. |
justification (name, email, Institute) <a
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<p> |
href="mailto:imach-dev@listes.ined.fr">mailto:imach-dev@listes.ined.fr</a>
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Our work is copyrighted as a GNU software product, i.e. program and |
</p>
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software can be distributed freely for non commercial use, but |
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actually some sources are not widely distributed today because they |
<p>Today we are two developpers only but we already use a private CVS
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borrow some codes from the book "Numerical Recipes in C" which is |
server. The CVS server will be freely accessible as soon as we have
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copyrighted. If you are an owner of theses sources you can get our |
replaced "Numerical Recipes in C maximization routines" with
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sources by asking us with a simple justification (name, email, |
equivalent routines from the new GNU scientific library.
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Institute) <a href="mailto:imach-dev@listes.ined.fr">mailto:imach-dev@listes.ined.fr</a> |
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</p> |
<p>Latest documentation can be accessed at <a
|
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href="http://euroreves.ined.fr/imach">http://euroreves.ined.fr/imach</a><br>
|
<p>Today we are two developpers only but we already use a private CVS |
</p>
|
server. The CVS server will be freely accessible as soon as we have |
|
replaced "Numerical Recipes in C maximization routines" with |
<p> There is a public mailing list of IMaCh's users. You can
|
equivalent routines from the new GNU scientific library. |
subscribe by sending a mail to <a
|
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href=mailto:imach-users-subscribe@listes.ined.fr>imach-users-subscribe@listes.ined.fr</a>
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<p>Latest documentation can be accessed at <a |
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href="http://euroreves.ined.fr/imach/wiki/index.php/Documentation">http://euroreves.ined.fr/imach/wiki/index.php/Documentation</a><br> |
href=mailto:imach-users-unsubscribe@listes.ined.fr>imach-users-unsubscribe@listes.ined.fr</a>
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<p> There is a public mailing list of IMaCh's users. You can |
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href=mailto:imach-users-subscribe@listes.ined.fr>imach-users-subscribe@listes.ined.fr</a> |
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(and unsubscribe with <a |
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href=mailto:imach-users-unsubscribe@listes.ined.fr>imach-users-unsubscribe@listes.ined.fr</a> |
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<h2>IMaCh Wiki</h2> |
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As discussed at the REVES meeting in <a href="http://www.prw.le.ac.uk/cgi-bin/reves/2005.cgi">Beijing</a>, we created a Wiki for IMaCh were people having used IMaCh (or having not been able to use it because of obscure or unadequate features) can add tips and discuss various aspects of IMaCh and interface with other statistical softwares. In many aspects, our "official documentation" is not accurate enough. |
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<p> Wikis are a very promising way to give information closer to your expectations. It also a very dynamic movement if you consider the first <a href="http://wikimania.wikimedia.org/wiki/Main_Page">International Wikimedia Conference in Francfurt</a> (August 2005), where most Wikis were represented and in particular <a href="http://wikipedia.org">Wikipedia</a>. |
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<p><a href="wiki"><font color="#FF0000" size="6">Access to the IMaCh Wiki</font></a></p>. Please ask for a username and password. |
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