Diff for /imach/src/ChangeLog between versions 1.40 and 1.73

version 1.40, 2020/02/22 20:59:15 version 1.73, 2024/07/02 13:25:47
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 2020-02-22  Brouard Nicolas  <brouard@brouard.name>  2024-07-02  Nicolas Brouard  <brouard@ined.fr>
   
         *  (Module): imach.c Update mle=-3 (for computing Life expectancy          * imach.c (Module): Trying compiling on Linux with clang (instead
         and life table from the data without any state)          of gcc which is too slow) and lot of warnings suppressed
   
 2019-05-20  Brouard Nicolas  <brouard@brouard.name>  2024-06-28  Nicolas Brouard   <brouard@ined.fr>
   
         * version.h: Summary: version 0.99.r19          * imach.c (Module): fixing some bugs in gnuplot and quantitative variables, but not completely solved
   
         * imach.c: Summary: Projection syntax simplified  2024-06-28  Nicolas Brouard  <brouard@ined.fr>
         We can now start projections, forward or backward, from the mean date  
         of inteviews up to or down to a number of years of projection:          * imach.c (Module): s6 errors with age*age (harmless).
         prevforecast=1 yearsfproj=15.3 mobil_average=0  
         or  2024-05-12  Nicolas Brouard   <brouard@ined.fr>
         prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0  
         or          * imach.c Version 0.99s5 In fact, the covariance of total life
         prevbackcast=1 yearsbproj=12.3 mobil_average=1          expectancy e.. with a partial life expectancy e.j is high,
         or          therefore the complete matrix of variance covariance has to be
         prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1          included in the formula of the standard error of the proportion of
           total life expectancy spent in a specific state:
 2019-05-18  Brouard Nicolas  <brouard@brouard.name>          var(X/Y)=mu_x^2/mu_y^2*(sigma_x^2/mu_x^2 -2
           sigma_xy/mu_x/mu_y+sigma^2/mu_y^2).  Also an error with mle=-3
         * imach.c: Summary: doxygen tex bug          made the program core dump. It is fixed in this version.
   
 2019-05-16  Brouard Nicolas  <brouard@brouard.name>  2024-04-30  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: There was some wrong lines added          * (Module): In version 0.99s4, we incorporated the calculation of
           the std error of the proportion of total life expectancy spent in
 2019-05-09  Brouard Nicolas  <brouard@brouard.name>          a specific state Var(e.j/e..) using the formula of Var(X/Y)
           depending only of the variances of X and Y and expectancies.
         * Makefile, imach.c: *** empty log message ***  
   2024-04-24  Nicolas Brouard   <brouard@ined.fr>
         * ChangeLog: Summary: C=  
           * (Module): This version comes late after having tested
         * imach.c: Summary: Some updates          successfully the praxis C version of Buckhardt.  But Buckardt's
           version was difficult to read and Gegenfurtner's version had a few
         * imach.c: Summary: Before ncovmax          typos which made its results less reliable than Buckhardt's
           results.  The most important work consisted in retyping the Brent
         * version.h: *** empty log message ***          original PRAXIS program written in Algol W (published with errors,
           ommitting the transposition of matrix V before its QR reduction
         * imach.c: Summary: 0.99r18 unlimited number of individuals          from Golub. I used the recent "awe" compiler from Gkynn Webster.
         The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.          The awe library had errors, for example in arc tangent function
           which have been fixed.
 2018-12-13  Brouard Nicolas  <brouard@brouard.name>  
           The main objective was to get identical results with the three
         * imach.c: Summary: Bug for young ages (<-30) will be in r17          versions: (1) Algol W, (2) Buckhardt'C version as well (3)
           Gegenfürtner C versions on the various test functions published by
 2018-12-05  Brouard Nicolas  <brouard@brouard.name>          Brent in 1973 in Algol W.
   
         * Makefile: Summary: 0.99r16          Also, in order to compare them, the random function had to produce
           the same sequence for the 3 softwares. The random function used in
 2018-05-02  Brouard Nicolas  <brouard@brouard.name>          imach corresponds to original Brent's random function written in
           Algol W.  Other point, in Algol W, the arrays of dimension n are
         * imach.c: Summary: Some bugs fixed          'normal' mathematical arrays starting from 1 to n. But this is a
           real issue in C where, by default, arrays are starting from 0 to
 2018-05-02  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
           seen that authors while trying to mimick original Brent Algol W
         * imach.c:  Summary: Bug for young ages (<-30) will be in r17          code are hesitating by changing either a loop originally from 1 to
           n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
 2018-05-02  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          shifting the index from original X(I) in Algol W to x[i-1] in C.
           But as IMaCh is using, since the beginning, the Numerical Recipes
         * imach.c: Summary: Some bugs fixed          functions vector or matrix, I changed Geggenfürtner code to mimick
           the original Algol W arrays. Thus the X(I) is translated in C as
 2018-05-01  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          x[i] which minimizes the errors. The Golub QR algorithm was
           published in Algol with overflow errors which were reproduced in
         * imach.c:          Brent's Algol W code. Buckhardt code fixed these errors which are
         Summary: Bug fixed by providing frequencies only for non missing covariates          much more problematic in C than in Algol W.  Thus Buckhardt code
           seems very safe, but i haven't chosen it for IMaCh because the C
 2018-04-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          style is horrible and almost unreadable compared to Gegenfürtner
           CO code which is very close to Brent's original. Also what makes
         * imach.c: Summary: some minor bugs          Buckhardt code more difficult to read is, instead of passing the
           minimum of parameters in the functions calls, as it is in Algol
 2018-04-21  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          Brent's code or Gegenfürtner's code, the list of parameters is
           high. For example, the flin function LONG REAL PROCEDURE FLIN
         * README.txt: *** empty log message ***          (LONG REAL VALUE L) has only one parameter in Algol W, the
           Gegenfürtner flin function had two parameters: static double
         * imach.c: Summary: Some bugs fixed, valgrind tested          flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
           function has 14 parameters which makes the code unreadable and
 2018-04-20  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          useless. Gegenfürtner used a lot of static variables or functions
           which I tried to minimize. Also in Gegefürtner, array dimensions
         * Makefile, README.txt, setup.iss: Summary: imach 0.99r16          were fixed to N. In my adaptation the flin is static double
           flin(double l, int j) and the parameter used are global variables.
         * imach.c:  
         Summary: Computing mean and stdeviation of fixed quantitative variables  2023-06-14  Nicolas Brouard   <brouard@ined.fr>
   
 2018-04-19  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): Testing if conjugate gradient could be quicker
           when lot of variables POWELLORIGINCONJUGATE
         * imach.c: Summary: Some minor bugs fixed  
   2023-05-23  Nicolas Brouard   <brouard@ined.fr>
         * version.h: *** empty log message ***  
           * imach.c (Module): Fixed PROB_r 
 2018-02-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2023-05-22  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * imach.c (Module): In the ILK....txt file, the number of columns
         * imach.c: Summary: Adding second argument for quitting          before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
   
 2018-02-21  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2023-05-08  Nicolas Brouard   <brouard@ined.fr>
   
         * Makefile, README.txt, imach.c: Summary: 0.99r15          *  (Module): Error V0 when result:. and model 1+age+V1: fixed
         New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c  
   2023-04-29  Nicolas Brouard  <brouard@ined.fr>
 2017-07-20  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): Inverting the model equation and fixingg bugs
         * imach.c: Summary: temporary working          in the drawings
           "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
 2017-07-19  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2023-04-24  Nicolas Brouard  <brouard@ined.fr>
         * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)  
           * imach.c (Module): some bugs in printinggnuplot 
 2017-07-17  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-09-19  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: BOM files can be read now  
           * imach.c (Module): Version 0.99r42 needed a newer version of
 2017-06-30  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          Gnuplot. But newer version 0.99r43 should run with the Gnuplot
           version 5.0 or 5.1 distributed with IMaCh.
         * imach.c: Summary: Graphs improvements  
   2022-09-18  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Saito's color  
           * imach.c (Module): Fixing when a state in the data is 0 or higher
 2017-06-29  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          than lstate+ndeath. Fixing the plot of contribution to Likelihood.
   
         * imach.c: Summary: Version 0.99r14  2022-09-16  Nicolas Brouard   <brouard@ined.fr>
   
 2017-06-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you  Feinuo
   
         * imach.c: Summary: More documentation on projections  2022-09-14  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)          * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
   
         * imach.c: Summary: Some bug with rint  2022-09-14  Nicolas Brouard   <brouard@ined.fr>
   
 2017-05-24  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): Version 0.99r39 with colored dummy covariates
           (fixed or time varying), using new last columns of
         * imach.c: *** empty log message ***          ILK_parameter.txt file.
   
 2017-05-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2022-09-11  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Code into subroutine, cleanings          * imach.c (Module): Adding timevarying products of any kinds,
           should work before shifting cotvar from ncovcol+nqv columns in
 2017-05-18  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          order to have a correspondance between the column of cotvar and
           the id of column.
         * imach.c:          (Module): Some cleaning and adding covariates in ILK.txt
         Summary: backprojection and confidence intervals of backprevalence  
   2022-09-09  Nicolas Brouard   <brouard@ined.fr>
 2017-05-13  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): Many improvements for fixing products of fixed
         * imach.c: Summary: temporary save for backprojection          timevarying as well as fixed * fixed, and test with quantitative
           covariate.
         * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)  
   2022-09-04  Nicolas Brouard   <brouard@ined.fr>
 2017-04-26  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): Now the easy runs i.e. without result or
         * imach.c: Summary: imach 0.99r13 Some bugs fixed          model=1+age only did not work. The defautl combination should be 1
           and not 0 because everything hasn't been tranformed yet.
         * imach.c: Summary: Labels in graphs  
   2022-09-02  Nicolas Brouard   <brouard@ined.fr>
 2017-04-24  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c: Version 0.99r35 because it outputs same results with
         * imach.c: Summary: to save          1+age+V1+V1*age for females and 1+age for females only
           (education=1 noweight)
 2017-04-18  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-08-31  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
 2017-04-05  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-08-21  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1  
           * imach.c (Module): Version 0.99r33 A lot of changes in
 2017-04-04  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          reassigning covariates: my first idea was that people will always
           use the first covariate V1 into the model but in fact they are
         * imach.c: Summary: Gnuplot indexations fixed (humm)          producing data with many covariates and can use an equation model
           with some of the covariate; it means that in a model V2+V3 instead
         * imach.c:          of codtabm(k,Tvaraff[j]) which calculates for combination k, for
         Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3          three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
           the equation model is restricted to two variables only (V2, V3)
 2017-04-03  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          and the combination for V2 should be codtabm(k,1) instead of
           (codtabm(k,2), and the code should be
         * imach.c: Summary: Version 0.99r12          codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
         Some cleanings, conformed with updated documentation.          made. All of these should be simplified once a day like we did in
           hpxij() for example by using precov[nres] which is computed in
 2017-03-30  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          decoderesult for each nres of each resultline. Loop should be done
           on the equation model globally by distinguishing only product with
         * version.h: *** empty log message ***          age (which are changing with age) and no more on type of
           covariates, single dummies, single covariates. 
         * version.h: Summary:0.99r11  
   2022-08-06  Nicolas Brouard   <brouard@ined.fr>
 2017-03-29  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
         * imach.c: Summary: Temp  
   2022-08-03  Nicolas Brouard   <brouard@ined.fr>
 2017-03-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
         * imach.c: Summary: Temporary  
   2022-07-25  Brouard Nicolas  <brouard@brouard.name>
 2017-03-08  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): Error cptcovn instead of nsd in bmij (was
         * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed          coredumped, revealed by Feiuno, thank you.
   
         * imach.c: Summary: Fixing data parameter line  2022-07-23  Nicolas Brouard   <brouard@ined.fr>
   
 2016-12-15  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * r29 W and not sqrt(Wald)
   
         * imach.c: Summary: 0.99 in progress  2022-07-22  Nicolas Brouard   <brouard@ined.fr>
   
 2016-09-15  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
   
         * imach.c: *** empty log message ***  2022-06-02  Brouard Nicolas  <brouard@brouard.name>
   
         * imach.c: Summary: not working          * imach.c (Module): Adding the Wald tests from the log to the main
           htm for better display of the maximum likelihood estimators.
 2016-09-08  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-05-30  Brouard Nicolas  <brouard@brouard.name>
         * imach.c: Summary: continue  
           * imach.c: With products of covariates (age or dummies or
 2016-09-07  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          quantitatives), estimates of parameters were good but when
           estimating variances the positions of newly created covariates
         * imach.c: Summary: Starting values from frequencies          were wrongly assigned and results were wrong. Thank to Feinua_Sun!
   
         * imach.c: *** empty log message ***  2022-05-24  Nicolas Brouard   <brouard@ined.fr>
   
 2016-09-02  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): Some attempts to find a bug of wrong estimates
           of confidencce intervals with product in the equation modelC
         * imach.c: *** empty log message ***  
   2022-05-15  Nicolas Brouard   <brouard@ined.fr>
 2016-08-30  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module):  Some minor improvements
         * imach.c: Summary: Fixing a lots  
   2022-04-13  Brouard Nicolas  <brouard@brouard.name>
 2016-08-29  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): Adding link to text data files
         * imach.c: Summary: gnuplot problem in Back projection to fix  
   2022-04-11  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Better  
           * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
 2016-08-26  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-04-05  Brouard Nicolas  <brouard@ined.fr>
         * imach.c:  
         Summary: Improvement in Powell output in order to copy and paste          * imach.c (Module): Fixed covariates (dummy or quantitative)
           with missing values have never been allowed but are ERRORS and
         * imach.c: Summary: Starting tests of 0.99          program quits. Standard deviations of fixed covariates were
           wrongly computed. Mean and standard deviations of time varying
         * imach.c: Summary: to valgrind          covariates are still not computed.
   
 2016-08-25  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2022-03-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * 99r25 Improvements in fixing discrepancies between covariates
           missing in result line but in model. 
 2016-08-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: *** empty log message ***          * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
   
         * imach.c: Summary: not working  *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
   
 2016-08-22  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * ./ (Module): Fixed bug on result:
   
         * imach.c: Summary: not working  *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Not working          * imach.c (Module): Fix bug on quitting after result lines!
           (Module): Version 0.99r21
 2016-07-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2021-02-12  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Completing for func too  
           * imach.c (Module): The use of a Windows BOM (huge) file is now an error
 2016-07-22  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   
         * imach.c: Summary: Fixing some arrays, still debugging  2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
   
 2016-07-21  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
   
         * imach.c:  2020-02-22  Brouard Nicolas  <brouard@ined.fr>
         Summary: 0.99 working (more or less) for Asian Workshop on multitate methods  
           *  (Module): imach.c Update mle=-3 (for computing Life expectancy
 2016-07-12  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          and life table from the data without any state)
   
         * imach.c: Summary: temp  2019-05-20  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: saving but not running          * version.h: Summary: version 0.99.r19
   
 2016-07-01  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: Projection syntax simplified
           We can now start projections, forward or backward, from the mean date
         * imach.c: Summary: Fixes          of inteviews up to or down to a number of years of projection:
           prevforecast=1 yearsfproj=15.3 mobil_average=0
 2016-02-19  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          or
           prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
         * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7          or
           prevbackcast=1 yearsbproj=12.3 mobil_average=1
         * setup.iss, Makefile, version.h: *** empty log message ***          or
           prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
         * imach.c: Summary: temporary  
   2019-05-18  Brouard Nicolas  <brouard@ined.fr>
 2016-02-17  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c: Summary: doxygen tex bug
         * imach.c: Summary: Probably last 0.98 stable version 0.98r6  
   2019-05-16  Brouard Nicolas  <brouard@ined.fr>
 2016-02-16  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c: Summary: There was some wrong lines added
         * imach.c: Summary: minor bug  
   2019-05-09  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.99r2  
           * Makefile, imach.c: *** empty log message ***
 2016-02-15  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * ChangeLog: Summary: C=
         * imach.c: *** empty log message ***  
           * imach.c: Summary: Some updates
 2016-02-12  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c: Summary: Before ncovmax
         * imach.c: Summary: 0.99 Back projections  
           * version.h: *** empty log message ***
 2015-12-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c: Summary: 0.99r18 unlimited number of individuals
         * imach.c: Summary: Experimental backcast          The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
   
 2015-12-18  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2018-12-13  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r4 Warning and status=-2          * imach.c: Summary: Bug for young ages (<-30) will be in r17
   
         Version 0.98r4 is now:  2018-12-05  Brouard Nicolas  <brouard@ined.fr>
          - displaying an error when status is -1, date of interview unknown and date of death known;  
          - permitting a status -2 when the vital status is unknown at a known date of right truncation.          * Makefile: Summary: 0.99r16
         Older changes concerning s=-2, dating from 2005 have been supersed.  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * imach.c: Summary: Some bugs fixed
 2015-12-16  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * imach.c:  Summary: Bug for young ages (<-30) will be in r17
         * imach.c: Summary: 0.98r4 working  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: Summary: linuxrpm added  
           * imach.c: Summary: Some bugs fixed
         * Makefile: *** empty log message ***  
   2018-05-01  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: temporary not working  
           * imach.c:
 2015-12-11  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          Summary: Bug fixed by providing frequencies only for non missing covariates
   
         * imach.c: Summary: 0.98r4  2018-04-27  Brouard Nicolas  <brouard@ined.fr>
   
 2015-12-08  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: some minor bugs
   
         * Makefile: *** empty log message ***  2018-04-21  Brouard Nicolas  <brouard@ined.fr>
   
 2015-11-21  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * README.txt: *** empty log message ***
   
         * Makefile:          * imach.c: Summary: Some bugs fixed, valgrind tested
         Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more  
   2018-04-20  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: minor typo  
           * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
         * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional  
           * imach.c:
         Author: Nicolas Brouard          Summary: Computing mean and stdeviation of fixed quantitative variables
   
 2015-11-18  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2018-04-19  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Start working on projected prevalences          * imach.c: Summary: Some minor bugs fixed
   
 2015-11-17  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * version.h: *** empty log message ***
   
         * imach.c: Summary: Adding ftolpl parameter  2018-02-27  Brouard Nicolas  <brouard@ined.fr>
         Author: N Brouard  
           * imach.c: *** empty log message ***
         We had difficulties to get smoothed confidence intervals. It was due  
         to the period prevalence which wasn't computed accurately. The inner          * imach.c: Summary: Adding second argument for quitting
         parameter ftolpl is now an outer parameter of the .imach parameter  
         file after estepm. If ftolpl is small 1.e-4 and estepm too,  2018-02-21  Brouard Nicolas  <brouard@ined.fr>
         computation are long.  
           * Makefile, README.txt, imach.c: Summary: 0.99r15
         * version.h: *** empty log message ***          New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
   
         * imach.c: Summary: temporary  2017-07-20  Brouard Nicolas  <brouard@ined.fr>
   
 2015-10-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: temporary working
   
         * Makefile: *** empty log message ***  2017-07-19  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss.in: Summary: some new subdirs          * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
   
         * imach.c: *** empty log message ***  2017-07-17  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss.in:          * imach.c: Summary: BOM files can be read now
         Summary: Adding gnuplot 5.1 with bin and etc for pango fonts  
   2017-06-30  Brouard Nicolas  <brouard@ined.fr>
 2015-10-24  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c: Summary: Graphs improvements
         * imach.c: *** empty log message ***  
           * imach.c: Summary: Saito's color
 2015-10-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2017-06-29  Brouard Nicolas  <brouard@ined.fr>
         * imach.c:  
         Summary: 0.98r3 some clarification for graphs on likelihood contributions          * imach.c: Summary: Version 0.99r14
   
 2015-10-01  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2017-06-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Some new graphs of contribution to likelihood          * imach.c: Summary: More documentation on projections
   
 2015-09-30  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
   
         * Makefile:          * imach.c: Summary: Some bug with rint
         Summary: Version read from version.h, itself read with cmake  
   2017-05-24  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: looking at better estimation of the hessian  
           * imach.c: *** empty log message ***
         Also a better criteria for convergence to the period prevalence And  
         therefore adding the number of years needed to converge. (The  2017-05-23  Brouard Nicolas  <brouard@ined.fr>
         prevalence in any alive state shold sum to one  
           * imach.c: Summary: Code into subroutine, cleanings
         * Makefile: *** empty log message ***  
   2017-05-18  Brouard Nicolas  <brouard@ined.fr>
 2015-09-22  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c:
         * imach.c:          Summary: backprojection and confidence intervals of backprevalence
         Summary: Adding some overall graph on contribution to likelihood. Might change  
   2017-05-13  Brouard Nicolas  <brouard@ined.fr>
 2015-09-15  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c: Summary: temporary save for backprojection
         * Makefile: *** empty log message ***  
           * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
         * imach.c: Summary: 0.98r0  
   2017-04-26  Brouard Nicolas  <brouard@ined.fr>
         - Some new graphs like suvival functions  
         - Some bugs fixed like model=1+age+V2.          * imach.c: Summary: imach 0.99r13 Some bugs fixed
   
         * ChangeLog, Makefile: Summary: 0.98r0          * imach.c: Summary: Labels in graphs
   
         * CMakeLists.txt: Summary: Some tests for setup.iss  2017-04-24  Brouard Nicolas  <brouard@ined.fr>
   
 2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>          * imach.c: Summary: to save
   
         *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc  2017-04-18  Brouard Nicolas  <brouard@ined.fr>
   
 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>          * imach.c: *** empty log message ***
   
         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.  2017-04-05  Brouard Nicolas  <brouard@ined.fr>
   
 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>          * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
   
         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)  2017-04-04  Brouard Nicolas  <brouard@ined.fr>
   
 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>          * imach.c: Summary: Gnuplot indexations fixed (humm)
   
         * imach.c (Module): Merging 1.61 to 1.162          * imach.c:
           Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>  
   2017-04-03  Brouard Nicolas  <brouard@ined.fr>
         * prevlim.h (Module):  
           * imach.c: Summary: Version 0.99r12
 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>          Some cleanings, conformed with updated documentation.
   
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...  2017-03-30  Brouard Nicolas  <brouard@ined.fr>
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.  
           * version.h: *** empty log message ***
 2010-04-29  brouard  <brouard@ined.fr>  
           * version.h: Summary:0.99r11
         * imach.c (Module): Checking covariates for more complex models  
         than V1+V2. A lot of change to be done. Unstable.  2017-03-29  Brouard Nicolas  <brouard@ined.fr>
   
 2010-04-26  brouard  <brouard@ined.fr>          * imach.c: Summary: Temp
   
         * imach.c (Module): merging some libgsl code. Fixing computation  2017-03-27  Brouard Nicolas  <brouard@ined.fr>
         of likelione (using inter/intrapolation if mle = 0) in order to  
         get same likelihood as if mle=1.          * imach.c: Summary: Temporary
         Some cleaning of code and comments added.  
   2017-03-08  Brouard Nicolas  <brouard@ined.fr>
 2009-10-29  brouard  <brouard@ined.fr>  
           * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.  
           * imach.c: Summary: Fixing data parameter line
 2006-06-30  Brouard Nicolas  <brouard@localhost>  
   2016-12-15  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Clarifications on computing e.j  
           * imach.c: Summary: 0.99 in progress
 2006-04-28  Brouard Nicolas  <brouard@localhost>  
   2016-09-15  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Yes the sum of survivors was wrong since  
         imach-114 because nhstepm was no more computed in the age          * imach.c: *** empty log message ***
         loop. Now we define nhstepma in the age loop.  
         (Module): In order to speed up (in case of numerous covariates) we          * imach.c: Summary: not working
         compute health expectancies (without variances) in a first step  
         and then all the health expectancies with variances or standard  2016-09-08  Brouard Nicolas  <brouard@ined.fr>
         deviation (needs data from the Hessian matrices) which slows the  
         computation.          * imach.c: Summary: continue
         In the future we should be able to stop the program is only health  
         expectancies and graph are needed without standard deviations.  2016-09-07  Brouard Nicolas  <brouard@ined.fr>
   
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * imach.c: Summary: Starting values from frequencies
   
         * imach.iss (Module):          * imach.c: *** empty log message ***
   
         * imach.c (Module): bugs in evsi + population file added in htm output file  2016-09-02  Brouard Nicolas  <brouard@ined.fr>
   
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * imach.c: *** empty log message ***
   
         * imach.c (Module):  2016-08-30  Brouard Nicolas  <brouard@ined.fr>
   
 2006-03-20  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: Fixing a lots
   
         * imach.c (Module): <title> changed, corresponds to .htm file  2016-08-29  Brouard Nicolas  <brouard@ined.fr>
         name. <head> headers where missing.  
           * imach.c: Summary: gnuplot problem in Back projection to fix
         * Makefile (Module): 0.98g  
           * imach.c: Summary: Better
         * imach.c (Module): Weights can have a decimal point as for  
         English (a comma might work with a correct LC_NUMERIC environment,  2016-08-26  Brouard Nicolas  <brouard@ined.fr>
         otherwise the weight is truncated).  
         Modification of warning when the covariates values are not 0 or          * imach.c:
         1.          Summary: Improvement in Powell output in order to copy and paste
         Version 0.98g  
           * imach.c: Summary: Starting tests of 0.99
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * imach.c: Summary: to valgrind
         * imach.c (Module): Comments concerning covariates added  
   2016-08-25  Brouard Nicolas  <brouard@ined.fr>
         * noreg-setup.iss (Module): Version 0.98f  
           * imach.c: *** empty log message ***
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup  
   2016-08-23  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): refinements in the computation of lli if  
         status=-2 in order to have more reliable computation if stepm is          * imach.c: *** empty log message ***
         not 1 month. Version 0.98f  
           * imach.c: Summary: not working
 2006-03-15  Brouard Nicolas  <brouard@localhost>  
   2016-08-22  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Bug if status = -2, the loglikelihood was  
         computed as likelihood omitting the logarithm. Version O.98e          * imach.c: Summary: not working
   
 2006-03-14  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: Not working
   
         * imach.c (Module): varevsij Comments added explaining the second  2016-07-23  Brouard Nicolas  <brouard@ined.fr>
         table of variances if popbased=1 .  
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.          * imach.c: Summary: Completing for func too
         (Module): Function pstamp added  
         (Module): Version 0.98d  2016-07-22  Brouard Nicolas  <brouard@ined.fr>
   
 2006-03-06  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: Fixing some arrays, still debugging
   
         * imach.c (Module): Variance-covariance wrong links and  2016-07-21  Brouard Nicolas  <brouard@ined.fr>
         varian-covariance of ej. is needed (Saito).  
           * imach.c:
 2006-02-27  Brouard Nicolas  <brouard@localhost>          Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
   
         * imach.c (Module): One freematrix added in mlikeli!  2016-07-12  Brouard Nicolas  <brouard@ined.fr>
   
 2006-02-26  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: temp
   
         * imach.c (Module): Some improvements in processing parameter          * imach.c: Summary: saving but not running
         filename with strsep.  
   2016-07-01  Brouard Nicolas  <brouard@ined.fr>
 2006-02-24  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: Fixes
         * imach.c (Module): Memory leaks checks with valgrind and:  
         datafile was not closed, some imatrix were not freed and on matrix  2016-02-19  Brouard Nicolas  <brouard@ined.fr>
         allocation too.  
           * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * setup.iss, Makefile, version.h: *** empty log message ***
         * strsep.c (Module): Inclusion because not in mingw32!!!  
           * imach.c: Summary: temporary
         * setup.iss.in (Module): IMACHSETUPVERSION added  
   2016-02-17  Brouard Nicolas  <brouard@ined.fr>
         * noreg-setup.iss (Module): added to cvs tree  
           * imach.c: Summary: Probably last 0.98 stable version 0.98r6
         * Makefile (Module): IMACHSETUPVERSION added  
   2016-02-16  Brouard Nicolas  <brouard@ined.fr>
 2006-01-30  BROUARD Nicolas  <brouard@localhost>  
           * imach.c: Summary: minor bug
         * Makefile (Module, Module): Latest Makefile  
           * imach.c: Summary: 0.99r2
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe  
   2016-02-15  Brouard Nicolas  <brouard@ined.fr>
 2006-01-27  BROUARD Nicolas  <brouard@localhost>  
           * imach.c: *** empty log message ***
         * noreg-setup.iss (Module): ADDED  
   2016-02-12  Brouard Nicolas  <brouard@ined.fr>
 2006-01-24  BROUARD Nicolas  <brouard@localhost>  
           * imach.c: Summary: 0.99 Back projections
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.  
   2015-12-23  Brouard Nicolas  <brouard@ined.fr>
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>  
           * imach.c: Summary: Experimental backcast
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg  
   2015-12-18  Brouard Nicolas  <brouard@ined.fr>
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X  
           * imach.c: Summary: 0.98r4 Warning and status=-2
 2005-09-30    <lievre@PC_00595>  
           Version 0.98r4 is now:
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.           - displaying an error when status is -1, date of interview unknown and date of death known;
         (Module): If the status is missing at the last wave but we know           - permitting a status -2 when the vital status is unknown at a known date of right truncation.
         that the person is alive, then we can code his/her status as -2          Older changes concerning s=-2, dating from 2005 have been supersed.
         (instead of missing=-1 in earlier versions) and his/her  
         contributions to the likelihood is 1 - Prob of dying from last          * Makefile: *** empty log message ***
         health status (= 1-p13= p11+p12 in the easiest case of somebody in  
         the healthy state at last known wave). Version is 0.98  2015-12-16  Brouard Nicolas  <brouard@ined.fr>
   
 2004-05-20  Brouard Nicolas  <brouard@localhost>          * Makefile: *** empty log message ***
   
         * imach.c (Repository):          * imach.c: Summary: 0.98r4 working
         Agnes added a direct estimation of mortality (without the need of  
         computing period prevalence and differential mortality). Thus here          * Makefile: Summary: linuxrpm added
         is version 0.97a which has been distributed to some people at  
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of          * Makefile: *** empty log message ***
         mortality using covariates is not done today. Estimating direct  
         mortality is a very different process because it doesn't need          * imach.c: Summary: temporary not working
         interpolation because it is easy to get the lx from the force of  
         the mortality mux in the simplest case as for a Gompertz (log mux  2015-12-11  Brouard Nicolas  <brouard@ined.fr>
         = a + b*x . But we have been able to incorporate the new code  
         within former imach program (0.96d) without deteriorating too much          * imach.c: Summary: 0.98r4
         the understanding of the program.  
   2015-12-08  Brouard Nicolas  <brouard@ined.fr>
 2003-06-25    <brouard@BROUARD>  
           * Makefile: *** empty log message ***
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't  
         exist so I changed back to asctime which exists.  2015-11-21  Brouard Nicolas  <brouard@ined.fr>
         (Module): Version 0.96b  
           * Makefile:
 2003-06-24    <brouard@BROUARD>          Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
   
         * imach.c (Module): Some bugs corrected for windows. Also, when          * imach.c: Summary: minor typo
         mle=-1 a template is output in file "or"mypar.txt with the design  
         of the covariance matrix to be input.          * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
   
 2003-06-25  Brouard Nicolas  <brouard@homebrou>          Author: Nicolas Brouard
   
         * imach.c (Repository): Duplicated warning errors corrected.  2015-11-18  Brouard Nicolas  <brouard@ined.fr>
         (Repository): Elapsed time after each iteration is now output. It  
         helps to forecast when convergence will be reached. Elapsed time          * imach.c: Summary: Start working on projected prevalences
         is stamped in powell.  We created a new html file for the graphs  
         concerning matrix of covariance. It has extension -cov.htm.  2015-11-17  Brouard Nicolas  <brouard@ined.fr>
   
 2003-06-23  Brouard Nicolas  <brouard@homebrou>          * imach.c: Summary: Adding ftolpl parameter
           Author: N Brouard
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.  
           We had difficulties to get smoothed confidence intervals. It was due
 2003-06-18  Brouard Nicolas  <brouard@homebrou>          to the period prevalence which wasn't computed accurately. The inner
           parameter ftolpl is now an outer parameter of the .imach parameter
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96          file after estepm. If ftolpl is small 1.e-4 and estepm too,
           computation are long.
 2003-06-17  Brouard Nicolas  <brouard@homebrou>  
           * version.h: *** empty log message ***
   
         * imach.c (Repository): Check when date of death was earlier that          * imach.c: Summary: temporary
         current date of interview. It may happen when the death was just  
         prior to the death. In this case, dh was negative and likelihood  2015-10-27  Brouard Nicolas  <brouard@ined.fr>
         was wrong (infinity). We still send an "Error" but patch by  
         assuming that the date of death was just one stepm after the          * Makefile: *** empty log message ***
         interview.  
         (Repository): Because some people have very long ID (first column)          * setup.iss.in: Summary: some new subdirs
         we changed int to long in num[] and we added a new lvector for  
         memory allocation. But we also truncated to 8 characters (left          * imach.c: *** empty log message ***
         truncation)  
           * setup.iss.in:
         (Repository): No more line truncation errors.          Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
   
 2003-06-14  Brouard Nicolas  <brouard@homebrou>  2015-10-24  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Repository): Add of a routine likelione (likelihood          * imach.c: *** empty log message ***
         only once) which prints on a text file  
         (ilk) the contributions to the likelihood for each  2015-10-23  Brouard Nicolas  <brouard@ined.fr>
         individual/wave.  
           * imach.c:
 2003-06-13  Brouard Nicolas  <brouard@homebrou>          Summary: 0.98r3 some clarification for graphs on likelihood contributions
         * imach.c (Repository): Replace "freqsummary" at a correct  
         place. It differs from routine "prevalence" which may be called  2015-10-01  Brouard Nicolas  <brouard@ined.fr>
         many times. Probs is memory consuming and must be used with  
         parcimony.          * imach.c: Summary: Some new graphs of contribution to likelihood
   
 2003-06-17    <brouard@BROUARD>  2015-09-30  Brouard Nicolas  <brouard@ined.fr>
   
         * timeval.h (Module): Added included file to make use of          * Makefile:
         gettimeofday working on win32 with cygwin.          Summary: Version read from version.h, itself read with cmake
   
 2003-05-16  Brouard Nicolas  <brouard@brouard>          * imach.c: Summary: looking at better estimation of the hessian
         * imach.c (Module): Insert of a warning if the delay between two  
         waves is negative.          Also a better criteria for convergence to the period prevalence And
           therefore adding the number of years needed to converge. (The
         * imach.c (Module):          prevalence in any alive state shold sum to one
   
 2003-05-03    <brouard@BROUARD>          * Makefile: *** empty log message ***
   
         * imach.c: Some cleaning  2015-09-22  Brouard Nicolas  <brouard@ined.fr>
   
 2003-03-28    <brouard@BROUARD>          * imach.c:
         * imach.c (Module): In version up to 0.92 likelihood was computed          Summary: Adding some overall graph on contribution to likelihood. Might change
         as if date of death was unknown. Death was treated as any other  
         health state: the date of the interview describes the actual state  2015-09-15  Brouard Nicolas  <brouard@ined.fr>
         and not the date of a change in health state. The former idea was  
         to consider that at each interview the state was recorded          * Makefile: *** empty log message ***
         (healthy, disable or death) and IMaCh was corrected; but when we  
         introduced the exact date of death then we should have modified          * imach.c: Summary: 0.98r0
         the contribution of an exact death to the likelihood. This new  
         contribution is smaller and very dependent of the step unit          - Some new graphs like survival functions
         stepm. It is no more the probability to die between last interview          - Some bugs fixed like model=1+age+V2.
         and month of death but the probability to survive from last  
         interview up to one month before death multiplied by the          * ChangeLog, Makefile: Summary: 0.98r0
         probability to die within a month. Thanks to Chris  
         Jackson for correcting this bug.  Former versions increased          * CMakeLists.txt: Summary: Some tests for setup.iss
         mortality artificially. The bad side is that we add another loop  
   2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
         which slows down the processing. The difference can be up to 10%          *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
   
   2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
         lower mortality.  
           *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
   
   2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
           *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
 2002-05-30    <brouard@BROUARD>  
   2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
   
           * imach.c (Module): Merging 1.61 to 1.162
   
   2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
         *  
           * prevlim.h (Module): 
   
   2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
   
           * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
         * imach.c (Module): Add correlation matrix of one-step          (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
   
   2010-04-29  brouard  <brouard@ined.fr>
         probabilities and covariance matrix  
           * imach.c (Module): Checking covariates for more complex models
           than V1+V2. A lot of change to be done. Unstable.
   
   2010-04-26  brouard  <brouard@ined.fr>
   
           * imach.c (Module): merging some libgsl code. Fixing computation
           of likelione (using inter/intrapolation if mle = 0) in order to
           get same likelihood as if mle=1.
           Some cleaning of code and comments added.
   
   2009-10-29  brouard  <brouard@ined.fr>
   
           * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
   
   2006-06-30  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Clarifications on computing e.j
   
   2006-04-28  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Yes the sum of survivors was wrong since
           imach-114 because nhstepm was no more computed in the age
           loop. Now we define nhstepma in the age loop.
           (Module): In order to speed up (in case of numerous covariates) we
           compute health expectancies (without variances) in a first step
           and then all the health expectancies with variances or standard
           deviation (needs data from the Hessian matrices) which slows the
           computation.
           In the future we should be able to stop the program is only health
           expectancies and graph are needed without standard deviations.
   
   2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.iss (Module): 
   
           * imach.c (Module): bugs in evsi + population file added in htm output file
   
   2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): 
   
   2006-03-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): <title> changed, corresponds to .htm file
           name. <head> headers where missing.
   
           * Makefile (Module): 0.98g
   
           * imach.c (Module): Weights can have a decimal point as for
           English (a comma might work with a correct LC_NUMERIC environment,
           otherwise the weight is truncated).
           Modification of warning when the covariates values are not 0 or
           1. 
           Version 0.98g
   
   2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): Comments concerning covariates added
   
           * noreg-setup.iss (Module): Version 0.98f
   
           * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
   
           * imach.c (Module): refinements in the computation of lli if
           status=-2 in order to have more reliable computation if stepm is
           not 1 month. Version 0.98f
   
   2006-03-15  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Bug if status = -2, the loglikelihood was
           computed as likelihood omitting the logarithm. Version O.98e
   
   2006-03-14  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): varevsij Comments added explaining the second
           table of variances if popbased=1 .
           (Module): Covariances of eij, ekl added, graphs fixed, new html link.
           (Module): Function pstamp added
           (Module): Version 0.98d 
   
   2006-03-06  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Variance-covariance wrong links and
           varian-covariance of ej. is needed (Saito).
   
   2006-02-27  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): One freematrix added in mlikeli!
   
   2006-02-26  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Some improvements in processing parameter
           filename with strsep.
   
   2006-02-24  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Memory leaks checks with valgrind and:
           datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
   
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * strsep.c (Module): Inclusion because not in mingw32!!!
   
           * setup.iss.in (Module): IMACHSETUPVERSION added
   
           * noreg-setup.iss (Module): added to cvs tree
   
           * Makefile (Module): IMACHSETUPVERSION added
   
   2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
           * Makefile (Module, Module): Latest Makefile
   
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
           * noreg-setup.iss (Module): ADDED
   
   2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
           * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
   2005-09-30    <lievre@PC_00595>
   
           * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
           that the person is alive, then we can code his/her status as -2
           (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
           health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98 
   
   2004-05-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Repository): 
           Agnes added a direct estimation of mortality (without the need of
           computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
           REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
           mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
           the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
           within former imach program (0.96d) without deteriorating too much
           the understanding of the program. 
   
   2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module): 
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
           which slows down the processing. The difference can be up to 10%
           lower mortality.
   
   2002-05-30    <brouard@BROUARD>
   
           * imach.c (Module): Add correlation matrix of one-step
           probabilities and covariance matrix
   

Removed from v.1.40  
changed lines
  Added in v.1.73


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