Diff for /imach/src/ChangeLog between versions 1.63 and 1.72

version 1.63, 2023/04/29 10:53:23 version 1.72, 2024/07/02 09:16:53
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 <<<<<<< ChangeLog  2024-07-02  Nicolas Brouard  <brouard@ined.fr>
   
           * imach.c (Module): Trying compiling on Linux with clang (instead
           of gcc which is too slow) and lot of warnings suppressed
   
   2024-06-28  Nicolas Brouard  <brouard@ined.fr>
   
           * imach.c (Module): s6 errors with age*age (harmless).
   
   2024-05-12  Nicolas Brouard   <brouard@ined.fr>
   
           * imach.c Version 0.99s5 In fact, the covariance of total life
           expectancy e.. with a partial life expectancy e.j is high,
           therefore the complete matrix of variance covariance has to be
           included in the formula of the standard error of the proportion of
           total life expectancy spent in a specific state:
           var(X/Y)=mu_x^2/mu_y^2*(sigma_x^2/mu_x^2 -2
           sigma_xy/mu_x/mu_y+sigma^2/mu_y^2).  Also an error with mle=-3
           made the program core dump. It is fixed in this version.
   
   2024-04-30  Nicolas Brouard   <brouard@ined.fr>
   
           * (Module): In version 0.99s4, we incorporated the calculation of
           the std error of the proportion of total life expectancy spent in
           a specific state Var(e.j/e..) using the formula of Var(X/Y)
           depending only of the variances of X and Y and expectancies.
   
   2024-04-24  Nicolas Brouard   <brouard@ined.fr>
   
           * (Module): This version comes late after having tested
           successfully the praxis C version of Buckhardt.  But Buckardt's
           version was difficult to read and Gegenfurtner's version had a few
           typos which made its results less reliable than Buckhardt's
           results.  The most important work consisted in retyping the Brent
           original PRAXIS program written in Algol W (published with errors,
           ommitting the transposition of matrix V before its QR reduction
           from Golub. I used the recent "awe" compiler from Gkynn Webster.
           The awe library had errors, for example in arc tangent function
           which have been fixed.
   
           The main objective was to get identical results with the three
           versions: (1) Algol W, (2) Buckhardt'C version as well (3)
           Gegenfürtner C versions on the various test functions published by
           Brent in 1973 in Algol W.
   
           Also, in order to compare them, the random function had to produce
           the same sequence for the 3 softwares. The random function used in
           imach corresponds to original Brent's random function written in
           Algol W.  Other point, in Algol W, the arrays of dimension n are
           'normal' mathematical arrays starting from 1 to n. But this is a
           real issue in C where, by default, arrays are starting from 0 to
           n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
           seen that authors while trying to mimick original Brent Algol W
           code are hesitating by changing either a loop originally from 1 to
           n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
           shifting the index from original X(I) in Algol W to x[i-1] in C.
           But as IMaCh is using, since the beginning, the Numerical Recipes
           functions vector or matrix, I changed Geggenfürtner code to mimick
           the original Algol W arrays. Thus the X(I) is translated in C as
           x[i] which minimizes the errors. The Golub QR algorithm was
           published in Algol with overflow errors which were reproduced in
           Brent's Algol W code. Buckhardt code fixed these errors which are
           much more problematic in C than in Algol W.  Thus Buckhardt code
           seems very safe, but i haven't chosen it for IMaCh because the C
           style is horrible and almost unreadable compared to Gegenfürtner
           CO code which is very close to Brent's original. Also what makes
           Buckhardt code more difficult to read is, instead of passing the
           minimum of parameters in the functions calls, as it is in Algol
           Brent's code or Gegenfürtner's code, the list of parameters is
           high. For example, the flin function LONG REAL PROCEDURE FLIN
           (LONG REAL VALUE L) has only one parameter in Algol W, the
           Gegenfürtner flin function had two parameters: static double
           flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
           function has 14 parameters which makes the code unreadable and
           useless. Gegenfürtner used a lot of static variables or functions
           which I tried to minimize. Also in Gegefürtner, array dimensions
           were fixed to N. In my adaptation the flin is static double
           flin(double l, int j) and the parameter used are global variables.
   
   2023-06-14  Nicolas Brouard   <brouard@ined.fr>
   
           * imach.c (Module): Testing if conjugate gradient could be quicker
           when lot of variables POWELLORIGINCONJUGATE
   
   2023-05-23  Nicolas Brouard   <brouard@ined.fr>
   
           * imach.c (Module): Fixed PROB_r 
   
   2023-05-22  Nicolas Brouard   <brouard@ined.fr>
   
           * imach.c (Module): In the ILK....txt file, the number of columns
           before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
   
   2023-05-08  Nicolas Brouard   <brouard@ined.fr>
   
           *  (Module): Error V0 when result:. and model 1+age+V1: fixed
   
 2023-04-29  Nicolas Brouard  <brouard@ined.fr>  2023-04-29  Nicolas Brouard  <brouard@ined.fr>
   
         * imach.c (Module): Inverting the model equation and fixingg bugs          * imach.c (Module): Inverting the model equation and fixingg bugs
Line 108 Line 204
 2022-06-02  Brouard Nicolas  <brouard@brouard.name>  2022-06-02  Brouard Nicolas  <brouard@brouard.name>
   
         * imach.c (Module): Adding the Wald tests from the log to the main          * imach.c (Module): Adding the Wald tests from the log to the main
         htm for better display of the maximum likelihood estimators.          htm for better display of the maximum likelihood estimators.
   
 2022-05-30  Brouard Nicolas  <brouard@brouard.name>  2022-05-30  Brouard Nicolas  <brouard@brouard.name>
   
         * imach.c: With products of covariates (age or dummies or          * imach.c: With products of covariates (age or dummies or
         quantitatives), estimates of parameters were good but when          quantitatives), estimates of parameters were good but when
         estimating variances the positions of newly created covariates          estimating variances the positions of newly created covariates
         were wrongly assigned and results were wrong. Thank to Feinua_Sun!          were wrongly assigned and results were wrong. Thank to Feinua_Sun!
   
 2022-05-24  Nicolas Brouard   <brouard@ined.fr>  2022-05-24  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c (Module): Some attempts to find a bug of wrong estimates          * imach.c (Module): Some attempts to find a bug of wrong estimates
         of confidencce intervals with product in the equation modelC          of confidencce intervals with product in the equation modelC
   
 2022-05-15  Nicolas Brouard   <brouard@ined.fr>  2022-05-15  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c (Module):  Some minor improvements          * imach.c (Module):  Some minor improvements
   
 2022-04-13  Brouard Nicolas  <brouard@brouard.name>  2022-04-13  Brouard Nicolas  <brouard@brouard.name>
   
         * imach.c (Module): Adding link to text data files          * imach.c (Module): Adding link to text data files
   
 2022-04-11  Nicolas Brouard   <brouard@ined.fr>  2022-04-11  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed          * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
   
 2022-04-05  Brouard Nicolas  <brouard@ined.fr>  2022-04-05  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Fixed covariates (dummy or quantitative)          * imach.c (Module): Fixed covariates (dummy or quantitative)
         with missing values have never been allowed but are ERRORS and          with missing values have never been allowed but are ERRORS and
         program quits. Standard deviations of fixed covariates were          program quits. Standard deviations of fixed covariates were
         wrongly computed. Mean and standard deviations of time varying          wrongly computed. Mean and standard deviations of time varying
         covariates are still not computed.          covariates are still not computed.
   
 2022-03-17  Brouard Nicolas  <brouard@ined.fr>  2022-03-17  Brouard Nicolas  <brouard@ined.fr>
   
         * 99r25 Improvements in fixing discrepancies between covariates          * 99r25 Improvements in fixing discrepancies between covariates
         missing in result line but in model.          missing in result line but in model. 
   
 *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>  *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
         * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett          * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
   
 *2021-03-08  Nicolas Brouard   <brouard@ined.fr>  *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
   
         * ./ (Module): Fixed bug on result:          * ./ (Module): Fixed bug on result:
   
 *2021-02-20  Nicolas Brouard   <brouard@ined.fr>  *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c (Module): Fix bug on quitting after result lines!          * imach.c (Module): Fix bug on quitting after result lines!
         (Module): Version 0.99r21          (Module): Version 0.99r21
   
 2021-02-12  Nicolas Brouard   <brouard@ined.fr>  2021-02-12  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c (Module): The use of a Windows BOM (huge) file is now an error          * imach.c (Module): The use of a Windows BOM (huge) file is now an error
   
   
 2021-02-11  Nicolas  Brouard   <brouard@ined.fr>  2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
   
         *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.          *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
   
 2020-02-22  Brouard Nicolas  <brouard@ined.fr>  2020-02-22  Brouard Nicolas  <brouard@ined.fr>
   
         *  (Module): imach.c Update mle=-3 (for computing Life expectancy          *  (Module): imach.c Update mle=-3 (for computing Life expectancy
         and life table from the data without any state)          and life table from the data without any state)
   
 2019-05-20  Brouard Nicolas  <brouard@ined.fr>  2019-05-20  Brouard Nicolas  <brouard@ined.fr>
   
         * version.h: Summary: version 0.99.r19          * version.h: Summary: version 0.99.r19
   
         * imach.c: Summary: Projection syntax simplified          * imach.c: Summary: Projection syntax simplified
         We can now start projections, forward or backward, from the mean date          We can now start projections, forward or backward, from the mean date
         of inteviews up to or down to a number of years of projection:          of inteviews up to or down to a number of years of projection:
         prevforecast=1 yearsfproj=15.3 mobil_average=0          prevforecast=1 yearsfproj=15.3 mobil_average=0
         or          or
         prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0          prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
         or          or
         prevbackcast=1 yearsbproj=12.3 mobil_average=1          prevbackcast=1 yearsbproj=12.3 mobil_average=1
         or          or
         prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1          prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
   
 2019-05-18  Brouard Nicolas  <brouard@ined.fr>  2019-05-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: doxygen tex bug          * imach.c: Summary: doxygen tex bug
   
 2019-05-16  Brouard Nicolas  <brouard@ined.fr>  2019-05-16  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: There was some wrong lines added          * imach.c: Summary: There was some wrong lines added
   
 2019-05-09  Brouard Nicolas  <brouard@ined.fr>  2019-05-09  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile, imach.c: *** empty log message ***          * Makefile, imach.c: *** empty log message ***
   
         * ChangeLog: Summary: C=          * ChangeLog: Summary: C=
   
         * imach.c: Summary: Some updates          * imach.c: Summary: Some updates
   
         * imach.c: Summary: Before ncovmax          * imach.c: Summary: Before ncovmax
   
         * version.h: *** empty log message ***          * version.h: *** empty log message ***
   
         * imach.c: Summary: 0.99r18 unlimited number of individuals          * imach.c: Summary: 0.99r18 unlimited number of individuals
         The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.          The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
   
 2018-12-13  Brouard Nicolas  <brouard@ined.fr>  2018-12-13  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Bug for young ages (<-30) will be in r17          * imach.c: Summary: Bug for young ages (<-30) will be in r17
   
 2018-12-05  Brouard Nicolas  <brouard@ined.fr>  2018-12-05  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: Summary: 0.99r16          * Makefile: Summary: 0.99r16
   
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Some bugs fixed          * imach.c: Summary: Some bugs fixed
   
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c:  Summary: Bug for young ages (<-30) will be in r17          * imach.c:  Summary: Bug for young ages (<-30) will be in r17
   
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Some bugs fixed          * imach.c: Summary: Some bugs fixed
   
 2018-05-01  Brouard Nicolas  <brouard@ined.fr>  2018-05-01  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c:          * imach.c:
         Summary: Bug fixed by providing frequencies only for non missing covariates          Summary: Bug fixed by providing frequencies only for non missing covariates
   
 2018-04-27  Brouard Nicolas  <brouard@ined.fr>  2018-04-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: some minor bugs          * imach.c: Summary: some minor bugs
   
 2018-04-21  Brouard Nicolas  <brouard@ined.fr>  2018-04-21  Brouard Nicolas  <brouard@ined.fr>
   
         * README.txt: *** empty log message ***          * README.txt: *** empty log message ***
   
         * imach.c: Summary: Some bugs fixed, valgrind tested          * imach.c: Summary: Some bugs fixed, valgrind tested
   
 2018-04-20  Brouard Nicolas  <brouard@ined.fr>  2018-04-20  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile, README.txt, setup.iss: Summary: imach 0.99r16          * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
   
         * imach.c:          * imach.c:
         Summary: Computing mean and stdeviation of fixed quantitative variables          Summary: Computing mean and stdeviation of fixed quantitative variables
   
 2018-04-19  Brouard Nicolas  <brouard@ined.fr>  2018-04-19  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Some minor bugs fixed          * imach.c: Summary: Some minor bugs fixed
   
         * version.h: *** empty log message ***          * version.h: *** empty log message ***
   
 2018-02-27  Brouard Nicolas  <brouard@ined.fr>  2018-02-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
         * imach.c: Summary: Adding second argument for quitting          * imach.c: Summary: Adding second argument for quitting
   
 2018-02-21  Brouard Nicolas  <brouard@ined.fr>  2018-02-21  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile, README.txt, imach.c: Summary: 0.99r15          * Makefile, README.txt, imach.c: Summary: 0.99r15
         New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c          New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
   
 2017-07-20  Brouard Nicolas  <brouard@ined.fr>  2017-07-20  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: temporary working          * imach.c: Summary: temporary working
   
 2017-07-19  Brouard Nicolas  <brouard@ined.fr>  2017-07-19  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)          * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
   
 2017-07-17  Brouard Nicolas  <brouard@ined.fr>  2017-07-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: BOM files can be read now          * imach.c: Summary: BOM files can be read now
   
 2017-06-30  Brouard Nicolas  <brouard@ined.fr>  2017-06-30  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Graphs improvements          * imach.c: Summary: Graphs improvements
   
         * imach.c: Summary: Saito's color          * imach.c: Summary: Saito's color
   
 2017-06-29  Brouard Nicolas  <brouard@ined.fr>  2017-06-29  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Version 0.99r14          * imach.c: Summary: Version 0.99r14
   
 2017-06-27  Brouard Nicolas  <brouard@ined.fr>  2017-06-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: More documentation on projections          * imach.c: Summary: More documentation on projections
   
         * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)          * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
   
         * imach.c: Summary: Some bug with rint          * imach.c: Summary: Some bug with rint
   
 2017-05-24  Brouard Nicolas  <brouard@ined.fr>  2017-05-24  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
 2017-05-23  Brouard Nicolas  <brouard@ined.fr>  2017-05-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Code into subroutine, cleanings          * imach.c: Summary: Code into subroutine, cleanings
   
 2017-05-18  Brouard Nicolas  <brouard@ined.fr>  2017-05-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c:          * imach.c:
         Summary: backprojection and confidence intervals of backprevalence          Summary: backprojection and confidence intervals of backprevalence
   
 2017-05-13  Brouard Nicolas  <brouard@ined.fr>  2017-05-13  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: temporary save for backprojection          * imach.c: Summary: temporary save for backprojection
   
         * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)          * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
   
 2017-04-26  Brouard Nicolas  <brouard@ined.fr>  2017-04-26  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: imach 0.99r13 Some bugs fixed          * imach.c: Summary: imach 0.99r13 Some bugs fixed
   
         * imach.c: Summary: Labels in graphs          * imach.c: Summary: Labels in graphs
   
 2017-04-24  Brouard Nicolas  <brouard@ined.fr>  2017-04-24  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: to save          * imach.c: Summary: to save
   
 2017-04-18  Brouard Nicolas  <brouard@ined.fr>  2017-04-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
 2017-04-05  Brouard Nicolas  <brouard@ined.fr>  2017-04-05  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1          * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
   
 2017-04-04  Brouard Nicolas  <brouard@ined.fr>  2017-04-04  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Gnuplot indexations fixed (humm)          * imach.c: Summary: Gnuplot indexations fixed (humm)
   
         * imach.c:          * imach.c:
         Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3          Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
   
 2017-04-03  Brouard Nicolas  <brouard@ined.fr>  2017-04-03  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Version 0.99r12          * imach.c: Summary: Version 0.99r12
         Some cleanings, conformed with updated documentation.          Some cleanings, conformed with updated documentation.
   
 2017-03-30  Brouard Nicolas  <brouard@ined.fr>  2017-03-30  Brouard Nicolas  <brouard@ined.fr>
   
         * version.h: *** empty log message ***          * version.h: *** empty log message ***
   
         * version.h: Summary:0.99r11          * version.h: Summary:0.99r11
   
 2017-03-29  Brouard Nicolas  <brouard@ined.fr>  2017-03-29  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Temp          * imach.c: Summary: Temp
   
 2017-03-27  Brouard Nicolas  <brouard@ined.fr>  2017-03-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Temporary          * imach.c: Summary: Temporary
   
 2017-03-08  Brouard Nicolas  <brouard@ined.fr>  2017-03-08  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed          * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
   
         * imach.c: Summary: Fixing data parameter line          * imach.c: Summary: Fixing data parameter line
   
 2016-12-15  Brouard Nicolas  <brouard@ined.fr>  2016-12-15  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.99 in progress          * imach.c: Summary: 0.99 in progress
   
 2016-09-15  Brouard Nicolas  <brouard@ined.fr>  2016-09-15  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
         * imach.c: Summary: not working          * imach.c: Summary: not working
   
 2016-09-08  Brouard Nicolas  <brouard@ined.fr>  2016-09-08  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: continue          * imach.c: Summary: continue
   
 2016-09-07  Brouard Nicolas  <brouard@ined.fr>  2016-09-07  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Starting values from frequencies          * imach.c: Summary: Starting values from frequencies
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
 2016-09-02  Brouard Nicolas  <brouard@ined.fr>  2016-09-02  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
 2016-08-30  Brouard Nicolas  <brouard@ined.fr>  2016-08-30  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Fixing a lots          * imach.c: Summary: Fixing a lots
   
 2016-08-29  Brouard Nicolas  <brouard@ined.fr>  2016-08-29  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: gnuplot problem in Back projection to fix          * imach.c: Summary: gnuplot problem in Back projection to fix
   
         * imach.c: Summary: Better          * imach.c: Summary: Better
   
 2016-08-26  Brouard Nicolas  <brouard@ined.fr>  2016-08-26  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c:          * imach.c:
         Summary: Improvement in Powell output in order to copy and paste          Summary: Improvement in Powell output in order to copy and paste
   
         * imach.c: Summary: Starting tests of 0.99          * imach.c: Summary: Starting tests of 0.99
   
         * imach.c: Summary: to valgrind          * imach.c: Summary: to valgrind
   
 2016-08-25  Brouard Nicolas  <brouard@ined.fr>  2016-08-25  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
 2016-08-23  Brouard Nicolas  <brouard@ined.fr>  2016-08-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
         * imach.c: Summary: not working          * imach.c: Summary: not working
   
 2016-08-22  Brouard Nicolas  <brouard@ined.fr>  2016-08-22  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: not working          * imach.c: Summary: not working
   
         * imach.c: Summary: Not working          * imach.c: Summary: Not working
   
 2016-07-23  Brouard Nicolas  <brouard@ined.fr>  2016-07-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Completing for func too          * imach.c: Summary: Completing for func too
   
 2016-07-22  Brouard Nicolas  <brouard@ined.fr>  2016-07-22  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Fixing some arrays, still debugging          * imach.c: Summary: Fixing some arrays, still debugging
   
 2016-07-21  Brouard Nicolas  <brouard@ined.fr>  2016-07-21  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c:          * imach.c:
         Summary: 0.99 working (more or less) for Asian Workshop on multitate methods          Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
   
 2016-07-12  Brouard Nicolas  <brouard@ined.fr>  2016-07-12  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: temp          * imach.c: Summary: temp
   
         * imach.c: Summary: saving but not running          * imach.c: Summary: saving but not running
   
 2016-07-01  Brouard Nicolas  <brouard@ined.fr>  2016-07-01  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Fixes          * imach.c: Summary: Fixes
   
 2016-02-19  Brouard Nicolas  <brouard@ined.fr>  2016-02-19  Brouard Nicolas  <brouard@ined.fr>
   
         * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7          * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
   
         * setup.iss, Makefile, version.h: *** empty log message ***          * setup.iss, Makefile, version.h: *** empty log message ***
   
         * imach.c: Summary: temporary          * imach.c: Summary: temporary
   
 2016-02-17  Brouard Nicolas  <brouard@ined.fr>  2016-02-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Probably last 0.98 stable version 0.98r6          * imach.c: Summary: Probably last 0.98 stable version 0.98r6
   
 2016-02-16  Brouard Nicolas  <brouard@ined.fr>  2016-02-16  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: minor bug          * imach.c: Summary: minor bug
   
         * imach.c: Summary: 0.99r2          * imach.c: Summary: 0.99r2
   
 2016-02-15  Brouard Nicolas  <brouard@ined.fr>  2016-02-15  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
 2016-02-12  Brouard Nicolas  <brouard@ined.fr>  2016-02-12  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.99 Back projections          * imach.c: Summary: 0.99 Back projections
   
 2015-12-23  Brouard Nicolas  <brouard@ined.fr>  2015-12-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Experimental backcast          * imach.c: Summary: Experimental backcast
   
 2015-12-18  Brouard Nicolas  <brouard@ined.fr>  2015-12-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r4 Warning and status=-2          * imach.c: Summary: 0.98r4 Warning and status=-2
   
         Version 0.98r4 is now:          Version 0.98r4 is now:
          - displaying an error when status is -1, date of interview unknown and date of death known;           - displaying an error when status is -1, date of interview unknown and date of death known;
          - permitting a status -2 when the vital status is unknown at a known date of right truncation.           - permitting a status -2 when the vital status is unknown at a known date of right truncation.
         Older changes concerning s=-2, dating from 2005 have been supersed.          Older changes concerning s=-2, dating from 2005 have been supersed.
   
         * Makefile: *** empty log message ***          * Makefile: *** empty log message ***
   
 2015-12-16  Brouard Nicolas  <brouard@ined.fr>  2015-12-16  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: *** empty log message ***          * Makefile: *** empty log message ***
   
         * imach.c: Summary: 0.98r4 working          * imach.c: Summary: 0.98r4 working
   
         * Makefile: Summary: linuxrpm added          * Makefile: Summary: linuxrpm added
   
         * Makefile: *** empty log message ***          * Makefile: *** empty log message ***
   
         * imach.c: Summary: temporary not working          * imach.c: Summary: temporary not working
   
 2015-12-11  Brouard Nicolas  <brouard@ined.fr>  2015-12-11  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r4          * imach.c: Summary: 0.98r4
   
 2015-12-08  Brouard Nicolas  <brouard@ined.fr>  2015-12-08  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: *** empty log message ***          * Makefile: *** empty log message ***
   
 2015-11-21  Brouard Nicolas  <brouard@ined.fr>  2015-11-21  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile:          * Makefile:
         Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more          Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
   
         * imach.c: Summary: minor typo          * imach.c: Summary: minor typo
   
         * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional          * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
   
         Author: Nicolas Brouard          Author: Nicolas Brouard
   
 2015-11-18  Brouard Nicolas  <brouard@ined.fr>  2015-11-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Start working on projected prevalences          * imach.c: Summary: Start working on projected prevalences
   
 2015-11-17  Brouard Nicolas  <brouard@ined.fr>  2015-11-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Adding ftolpl parameter          * imach.c: Summary: Adding ftolpl parameter
         Author: N Brouard          Author: N Brouard
   
         We had difficulties to get smoothed confidence intervals. It was due          We had difficulties to get smoothed confidence intervals. It was due
         to the period prevalence which wasn't computed accurately. The inner          to the period prevalence which wasn't computed accurately. The inner
         parameter ftolpl is now an outer parameter of the .imach parameter          parameter ftolpl is now an outer parameter of the .imach parameter
         file after estepm. If ftolpl is small 1.e-4 and estepm too,          file after estepm. If ftolpl is small 1.e-4 and estepm too,
         computation are long.          computation are long.
   
         * version.h: *** empty log message ***          * version.h: *** empty log message ***
   
         * imach.c: Summary: temporary          * imach.c: Summary: temporary
   
 2015-10-27  Brouard Nicolas  <brouard@ined.fr>  2015-10-27  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: *** empty log message ***          * Makefile: *** empty log message ***
   
         * setup.iss.in: Summary: some new subdirs          * setup.iss.in: Summary: some new subdirs
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
         * setup.iss.in:          * setup.iss.in:
         Summary: Adding gnuplot 5.1 with bin and etc for pango fonts          Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
   
 2015-10-24  Brouard Nicolas  <brouard@ined.fr>  2015-10-24  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
 2015-10-23  Brouard Nicolas  <brouard@ined.fr>  2015-10-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c:          * imach.c:
         Summary: 0.98r3 some clarification for graphs on likelihood contributions          Summary: 0.98r3 some clarification for graphs on likelihood contributions
   
 2015-10-01  Brouard Nicolas  <brouard@ined.fr>  2015-10-01  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Some new graphs of contribution to likelihood          * imach.c: Summary: Some new graphs of contribution to likelihood
   
 2015-09-30  Brouard Nicolas  <brouard@ined.fr>  2015-09-30  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile:          * Makefile:
         Summary: Version read from version.h, itself read with cmake          Summary: Version read from version.h, itself read with cmake
   
         * imach.c: Summary: looking at better estimation of the hessian          * imach.c: Summary: looking at better estimation of the hessian
   
         Also a better criteria for convergence to the period prevalence And          Also a better criteria for convergence to the period prevalence And
         therefore adding the number of years needed to converge. (The          therefore adding the number of years needed to converge. (The
         prevalence in any alive state shold sum to one          prevalence in any alive state shold sum to one
   
         * Makefile: *** empty log message ***          * Makefile: *** empty log message ***
   
 2015-09-22  Brouard Nicolas  <brouard@ined.fr>  2015-09-22  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c:          * imach.c:
         Summary: Adding some overall graph on contribution to likelihood. Might change          Summary: Adding some overall graph on contribution to likelihood. Might change
   
 2015-09-15  Brouard Nicolas  <brouard@ined.fr>  2015-09-15  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: *** empty log message ***          * Makefile: *** empty log message ***
   
         * imach.c: Summary: 0.98r0          * imach.c: Summary: 0.98r0
   
         - Some new graphs like survival functions          - Some new graphs like survival functions
         - Some bugs fixed like model=1+age+V2.          - Some bugs fixed like model=1+age+V2.
   
         * ChangeLog, Makefile: Summary: 0.98r0          * ChangeLog, Makefile: Summary: 0.98r0
   
         * CMakeLists.txt: Summary: Some tests for setup.iss          * CMakeLists.txt: Summary: Some tests for setup.iss
   
 2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
         *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc          *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
   
 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>  2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
   
         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.          *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
   
 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)          *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
   
 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>  2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
   
         * imach.c (Module): Merging 1.61 to 1.162          * imach.c (Module): Merging 1.61 to 1.162
   
 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>  2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
   
         * prevlim.h (Module):          * prevlim.h (Module): 
   
 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>  2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
   
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...          * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.          (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
   
 2010-04-29  brouard  <brouard@ined.fr>  2010-04-29  brouard  <brouard@ined.fr>
   
         * imach.c (Module): Checking covariates for more complex models          * imach.c (Module): Checking covariates for more complex models
         than V1+V2. A lot of change to be done. Unstable.          than V1+V2. A lot of change to be done. Unstable.
   
 2010-04-26  brouard  <brouard@ined.fr>  2010-04-26  brouard  <brouard@ined.fr>
   
         * imach.c (Module): merging some libgsl code. Fixing computation          * imach.c (Module): merging some libgsl code. Fixing computation
         of likelione (using inter/intrapolation if mle = 0) in order to          of likelione (using inter/intrapolation if mle = 0) in order to
         get same likelihood as if mle=1.          get same likelihood as if mle=1.
         Some cleaning of code and comments added.          Some cleaning of code and comments added.
   
 2009-10-29  brouard  <brouard@ined.fr>  2009-10-29  brouard  <brouard@ined.fr>
   
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.          * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
   
 2006-06-30  Brouard Nicolas  <brouard@localhost>  2006-06-30  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Module): Clarifications on computing e.j          * imach.c (Module): Clarifications on computing e.j
   
 2006-04-28  Brouard Nicolas  <brouard@localhost>  2006-04-28  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Module): Yes the sum of survivors was wrong since          * imach.c (Module): Yes the sum of survivors was wrong since
         imach-114 because nhstepm was no more computed in the age          imach-114 because nhstepm was no more computed in the age
         loop. Now we define nhstepma in the age loop.          loop. Now we define nhstepma in the age loop.
         (Module): In order to speed up (in case of numerous covariates) we          (Module): In order to speed up (in case of numerous covariates) we
         compute health expectancies (without variances) in a first step          compute health expectancies (without variances) in a first step
         and then all the health expectancies with variances or standard          and then all the health expectancies with variances or standard
         deviation (needs data from the Hessian matrices) which slows the          deviation (needs data from the Hessian matrices) which slows the
         computation.          computation.
         In the future we should be able to stop the program is only health          In the future we should be able to stop the program is only health
         expectancies and graph are needed without standard deviations.          expectancies and graph are needed without standard deviations.
   
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
         * imach.iss (Module):          * imach.iss (Module): 
   
         * imach.c (Module): bugs in evsi + population file added in htm output file          * imach.c (Module): bugs in evsi + population file added in htm output file
   
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
         * imach.c (Module):          * imach.c (Module): 
   
 2006-03-20  Brouard Nicolas  <brouard@localhost>  2006-03-20  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Module): <title> changed, corresponds to .htm file          * imach.c (Module): <title> changed, corresponds to .htm file
         name. <head> headers where missing.          name. <head> headers where missing.
   
         * Makefile (Module): 0.98g          * Makefile (Module): 0.98g
   
         * imach.c (Module): Weights can have a decimal point as for          * imach.c (Module): Weights can have a decimal point as for
         English (a comma might work with a correct LC_NUMERIC environment,          English (a comma might work with a correct LC_NUMERIC environment,
         otherwise the weight is truncated).          otherwise the weight is truncated).
         Modification of warning when the covariates values are not 0 or          Modification of warning when the covariates values are not 0 or
         1.          1. 
         Version 0.98g          Version 0.98g
   
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
         * imach.c (Module): Comments concerning covariates added          * imach.c (Module): Comments concerning covariates added
   
         * noreg-setup.iss (Module): Version 0.98f          * noreg-setup.iss (Module): Version 0.98f
   
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup          * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
   
         * imach.c (Module): refinements in the computation of lli if          * imach.c (Module): refinements in the computation of lli if
         status=-2 in order to have more reliable computation if stepm is          status=-2 in order to have more reliable computation if stepm is
         not 1 month. Version 0.98f          not 1 month. Version 0.98f
   
 2006-03-15  Brouard Nicolas  <brouard@localhost>  2006-03-15  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Module): Bug if status = -2, the loglikelihood was          * imach.c (Module): Bug if status = -2, the loglikelihood was
         computed as likelihood omitting the logarithm. Version O.98e          computed as likelihood omitting the logarithm. Version O.98e
   
 2006-03-14  Brouard Nicolas  <brouard@localhost>  2006-03-14  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Module): varevsij Comments added explaining the second          * imach.c (Module): varevsij Comments added explaining the second
         table of variances if popbased=1 .          table of variances if popbased=1 .
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.          (Module): Covariances of eij, ekl added, graphs fixed, new html link.
         (Module): Function pstamp added          (Module): Function pstamp added
         (Module): Version 0.98d          (Module): Version 0.98d 
   
 2006-03-06  Brouard Nicolas  <brouard@localhost>  2006-03-06  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Module): Variance-covariance wrong links and          * imach.c (Module): Variance-covariance wrong links and
         varian-covariance of ej. is needed (Saito).          varian-covariance of ej. is needed (Saito).
   
 2006-02-27  Brouard Nicolas  <brouard@localhost>  2006-02-27  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Module): One freematrix added in mlikeli!          * imach.c (Module): One freematrix added in mlikeli!
   
 2006-02-26  Brouard Nicolas  <brouard@localhost>  2006-02-26  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Module): Some improvements in processing parameter          * imach.c (Module): Some improvements in processing parameter
         filename with strsep.          filename with strsep.
   
 2006-02-24  Brouard Nicolas  <brouard@localhost>  2006-02-24  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Module): Memory leaks checks with valgrind and:          * imach.c (Module): Memory leaks checks with valgrind and:
         datafile was not closed, some imatrix were not freed and on matrix          datafile was not closed, some imatrix were not freed and on matrix
         allocation too.          allocation too.
   
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
         * strsep.c (Module): Inclusion because not in mingw32!!!          * strsep.c (Module): Inclusion because not in mingw32!!!
   
         * setup.iss.in (Module): IMACHSETUPVERSION added          * setup.iss.in (Module): IMACHSETUPVERSION added
   
         * noreg-setup.iss (Module): added to cvs tree          * noreg-setup.iss (Module): added to cvs tree
   
         * Makefile (Module): IMACHSETUPVERSION added          * Makefile (Module): IMACHSETUPVERSION added
   
 2006-01-30  BROUARD Nicolas  <brouard@localhost>  2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
         * Makefile (Module, Module): Latest Makefile          * Makefile (Module, Module): Latest Makefile
   
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe          * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
 2006-01-27  BROUARD Nicolas  <brouard@localhost>  2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
         * noreg-setup.iss (Module): ADDED          * noreg-setup.iss (Module): ADDED
   
 2006-01-24  BROUARD Nicolas  <brouard@localhost>  2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.          * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>  2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg          * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X          * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
 2005-09-30    <lievre@PC_00595>  2005-09-30    <lievre@PC_00595>
   
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.          * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
         (Module): If the status is missing at the last wave but we know          (Module): If the status is missing at the last wave but we know
         that the person is alive, then we can code his/her status as -2          that the person is alive, then we can code his/her status as -2
         (instead of missing=-1 in earlier versions) and his/her          (instead of missing=-1 in earlier versions) and his/her
         contributions to the likelihood is 1 - Prob of dying from last          contributions to the likelihood is 1 - Prob of dying from last
         health status (= 1-p13= p11+p12 in the easiest case of somebody in          health status (= 1-p13= p11+p12 in the easiest case of somebody in
         the healthy state at last known wave). Version is 0.98          the healthy state at last known wave). Version is 0.98 
   
 2004-05-20  Brouard Nicolas  <brouard@localhost>  2004-05-20  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Repository):          * imach.c (Repository): 
         Agnes added a direct estimation of mortality (without the need of          Agnes added a direct estimation of mortality (without the need of
         computing period prevalence and differential mortality). Thus here          computing period prevalence and differential mortality). Thus here
         is version 0.97a which has been distributed to some people at          is version 0.97a which has been distributed to some people at
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of          REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
         mortality using covariates is not done today. Estimating direct          mortality using covariates is not done today. Estimating direct
         mortality is a very different process because it doesn't need          mortality is a very different process because it doesn't need
         interpolation because it is easy to get the lx from the force of          interpolation because it is easy to get the lx from the force of
         the mortality mux in the simplest case as for a Gompertz (log mux          the mortality mux in the simplest case as for a Gompertz (log mux
         = a + b*x . But we have been able to incorporate the new code          = a + b*x . But we have been able to incorporate the new code
         within former imach program (0.96d) without deteriorating too much          within former imach program (0.96d) without deteriorating too much
         the understanding of the program.          the understanding of the program. 
   
 2003-06-25    <brouard@BROUARD>  2003-06-25    <brouard@BROUARD>
   
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't          * imach.c (Module): On windows (cygwin) function asctime_r doesn't
         exist so I changed back to asctime which exists.          exist so I changed back to asctime which exists.
         (Module): Version 0.96b          (Module): Version 0.96b
   
 2003-06-24    <brouard@BROUARD>  2003-06-24    <brouard@BROUARD>
   
         * imach.c (Module): Some bugs corrected for windows. Also, when          * imach.c (Module): Some bugs corrected for windows. Also, when
         mle=-1 a template is output in file "or"mypar.txt with the design          mle=-1 a template is output in file "or"mypar.txt with the design
         of the covariance matrix to be input.          of the covariance matrix to be input.
   
 2003-06-25  Brouard Nicolas  <brouard@homebrou>  2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
         * imach.c (Repository): Duplicated warning errors corrected.          * imach.c (Repository): Duplicated warning errors corrected.
         (Repository): Elapsed time after each iteration is now output. It          (Repository): Elapsed time after each iteration is now output. It
         helps to forecast when convergence will be reached. Elapsed time          helps to forecast when convergence will be reached. Elapsed time
         is stamped in powell.  We created a new html file for the graphs          is stamped in powell.  We created a new html file for the graphs
         concerning matrix of covariance. It has extension -cov.htm.          concerning matrix of covariance. It has extension -cov.htm.
   
 2003-06-23  Brouard Nicolas  <brouard@homebrou>  2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.          * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
 2003-06-18  Brouard Nicolas  <brouard@homebrou>  2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96          * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
 2003-06-17  Brouard Nicolas  <brouard@homebrou>  2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
         * imach.c (Repository): Check when date of death was earlier that          * imach.c (Repository): Check when date of death was earlier that
         current date of interview. It may happen when the death was just          current date of interview. It may happen when the death was just
         prior to the death. In this case, dh was negative and likelihood          prior to the death. In this case, dh was negative and likelihood
         was wrong (infinity). We still send an "Error" but patch by          was wrong (infinity). We still send an "Error" but patch by
         assuming that the date of death was just one stepm after the          assuming that the date of death was just one stepm after the
         interview.          interview.
         (Repository): Because some people have very long ID (first column)          (Repository): Because some people have very long ID (first column)
         we changed int to long in num[] and we added a new lvector for          we changed int to long in num[] and we added a new lvector for
         memory allocation. But we also truncated to 8 characters (left          memory allocation. But we also truncated to 8 characters (left
         truncation)          truncation)
   
         (Repository): No more line truncation errors.          (Repository): No more line truncation errors.
   
 2003-06-14  Brouard Nicolas  <brouard@homebrou>  2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
         * imach.c (Repository): Add of a routine likelione (likelihood          * imach.c (Repository): Add of a routine likelione (likelihood
         only once) which prints on a text file          only once) which prints on a text file
         (ilk) the contributions to the likelihood for each          (ilk) the contributions to the likelihood for each
         individual/wave.          individual/wave.
   
 2003-06-13  Brouard Nicolas  <brouard@homebrou>  2003-06-13  Brouard Nicolas  <brouard@homebrou>
         * imach.c (Repository): Replace "freqsummary" at a correct          * imach.c (Repository): Replace "freqsummary" at a correct
         place. It differs from routine "prevalence" which may be called          place. It differs from routine "prevalence" which may be called
         many times. Probs is memory consuming and must be used with          many times. Probs is memory consuming and must be used with
         parcimony.          parcimony.
   
 2003-06-17    <brouard@BROUARD>  2003-06-17    <brouard@BROUARD>
   
         * timeval.h (Module): Added included file to make use of          * timeval.h (Module): Added included file to make use of
         gettimeofday working on win32 with cygwin.          gettimeofday working on win32 with cygwin.
   
 2003-05-16  Brouard Nicolas  <brouard@brouard>  2003-05-16  Brouard Nicolas  <brouard@brouard>
         * imach.c (Module): Insert of a warning if the delay between two          * imach.c (Module): Insert of a warning if the delay between two
         waves is negative.          waves is negative.
   
         * imach.c (Module):          * imach.c (Module): 
   
 2003-05-03    <brouard@BROUARD>  2003-05-03    <brouard@BROUARD>
   
         * imach.c: Some cleaning          * imach.c: Some cleaning
   
 2003-03-28    <brouard@BROUARD>  2003-03-28    <brouard@BROUARD>
         * imach.c (Module): In version up to 0.92 likelihood was computed          * imach.c (Module): In version up to 0.92 likelihood was computed
         as if date of death was unknown. Death was treated as any other          as if date of death was unknown. Death was treated as any other
         health state: the date of the interview describes the actual state          health state: the date of the interview describes the actual state
         and not the date of a change in health state. The former idea was          and not the date of a change in health state. The former idea was
         to consider that at each interview the state was recorded          to consider that at each interview the state was recorded
         (healthy, disable or death) and IMaCh was corrected; but when we          (healthy, disable or death) and IMaCh was corrected; but when we
         introduced the exact date of death then we should have modified          introduced the exact date of death then we should have modified
         the contribution of an exact death to the likelihood. This new          the contribution of an exact death to the likelihood. This new
         contribution is smaller and very dependent of the step unit          contribution is smaller and very dependent of the step unit
         stepm. It is no more the probability to die between last interview          stepm. It is no more the probability to die between last interview
         and month of death but the probability to survive from last          and month of death but the probability to survive from last
         interview up to one month before death multiplied by the          interview up to one month before death multiplied by the
         probability to die within a month. Thanks to Chris          probability to die within a month. Thanks to Chris
         Jackson for correcting this bug.  Former versions increased          Jackson for correcting this bug.  Former versions increased
         mortality artificially. The bad side is that we add another loop          mortality artificially. The bad side is that we add another loop
         which slows down the processing. The difference can be up to 10%          which slows down the processing. The difference can be up to 10%
         lower mortality.          lower mortality.
   
 2002-05-30    <brouard@BROUARD>  2002-05-30    <brouard@BROUARD>
   
         * imach.c (Module): Add correlation matrix of one-step          * imach.c (Module): Add correlation matrix of one-step
         probabilities and covariance matrix          probabilities and covariance matrix
   

Removed from v.1.63  
changed lines
  Added in v.1.72


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