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Diff for /imach/src/ChangeLog between versions 1.6 and 1.17

version 1.6, 2003/06/17 20:16:05 version 1.17, 2006/02/09 14:30:41
Line 1 Line 1
 2003-06-17  Brouard Nicolas  <brouard@homebrou>  2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
         * imach.c (Repository): Check when date of death was earlier that          * setup.iss.in (Module): IMACHSETUPVERSION added
         current date of interview. It may happen when the death was just  
         prior to the death. In this case, dh was negative and likelihood          * noreg-setup.iss (Module): added to cvs tree
         was wrong (infinity). We still send an "Error" but patch by  
         assuming that the date of death was just one stepm after the          * Makefile (Module): IMACHSETUPVERSION added
         interview.  
         (Repository): Because some people have very long ID (first column)  2006-01-30  BROUARD Nicolas  <brouard@localhost>
         we changed int to long in num[] and we added a new lvector for  
         memory allocation. But we also truncated to 8 characters (left          * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
         truncation)  
         (Repository): No more line truncation errors.  2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
 2003-06-14  Brouard Nicolas  <brouard@homebrou>          * noreg-setup.iss (Module): ADDED
   
         * imach.c (Repository): Add of a routine likelione (likelihood  2006-01-24  BROUARD Nicolas  <brouard@localhost>
         only once) which prints on a text file  
         (ilk) the contributions to the likelihood for each          * imach.c (Module): Comments (lines starting with a #) are allowed in data.
         individual/wave.  
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
 2003-06-13  Brouard Nicolas  <brouard@homebrou>  
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
         * imach.c (Repository): Replace "freqsummary" at a correct  
         place. It differs from routine "prevalence" which may be called          * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
         many times. Probs is memory consuming and must be used with  
         parcimony.  2005-09-30    <lievre@PC_00595>
   
 2003-06-17    <brouard@BROUARD>          * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
         * timeval.h (Module): Added included file to make use of          that the person is alive, then we can code his/her status as -2
         gettimeofday working on win32 with cygwin.          (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
 2003-05-16  Brouard Nicolas  <brouard@brouard>          health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98
         * imach.c (Module): Insert of a warning if the delay between two  
         waves is negative.  2004-05-20  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Module):          * imach.c (Repository):
           Agnes added a direct estimation of mortality (without the need of
 2003-05-03    <brouard@BROUARD>          computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
         * imach.c: Some cleaning          REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
 2003-03-28    <brouard@BROUARD>          mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
         * imach.c (Module): In version up to 0.92 likelihood was computed          interpolation because it is easy to get the lx from the force of
         as if date of death was unknown. Death was treated as any other          the mortality mux in the simplest case as for a Gompertz (log mux
         health state: the date of the interview describes the actual state          = a + b*x . But we have been able to incorporate the new code
         and not the date of a change in health state. The former idea was          within former imach program (0.96d) without deteriorating too much
         to consider that at each interview the state was recorded          the understanding of the program.
         (healthy, disable or death) and IMaCh was corrected; but when we  
         introduced the exact date of death then we should have modified  2003-06-25    <brouard@BROUARD>
         the contribution of an exact death to the likelihood. This new  
         contribution is smaller and very dependent of the step unit          * imach.c (Module): On windows (cygwin) function asctime_r doesn't
         stepm. It is no more the probability to die between last interview          exist so I changed back to asctime which exists.
         and month of death but the probability to survive from last          (Module): Version 0.96b
         interview up to one month before death multiplied by the  
         probability to die within a month. Thanks to Chris  2003-06-24    <brouard@BROUARD>
         Jackson for correcting this bug.  Former versions increased  
         mortality artificially. The bad side is that we add another loop          * imach.c (Module): Some bugs corrected for windows. Also, when
         which slows down the processing. The difference can be up to 10%          mle=-1 a template is output in file "or"mypar.txt with the design
         lower mortality.          of the covariance matrix to be input.
   
 2002-05-30    <brouard@BROUARD>  2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
         *          * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
         * imach.c (Module): Add correlation matrix of one-step          helps to forecast when convergence will be reached. Elapsed time
         probabilities and covariance matrix          is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module):
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
   
   
           which slows down the processing. The difference can be up to 10%
   
   
           lower mortality.
   
   
   
   
   
   2002-05-30    <brouard@BROUARD>
   
   
   
   
   
           *
   
   
   
   
   
           * imach.c (Module): Add correlation matrix of one-step
   
   
           probabilities and covariance matrix
   
   
   
   
   
Removed from v.1.6  
changed lines
  Added in v.1.17

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