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Diff for /imach/src/ChangeLog between versions 1.34 and 1.54

version 1.34, 2014/08/28 07:52:45 version 1.54, 2022/07/23 17:43:46
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 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>  2022-07-23  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...          * r29 W and not sqrt(Wald)
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.  
   2022-07-22  Nicolas Brouard   <brouard@ined.fr>
 2010-04-29  brouard  <brouard@ined.fr>  
           *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
         * imach.c (Module): Checking covariates for more complex models  
         than V1+V2. A lot of change to be done. Unstable.  2022-05-30  Brouard Nicolas  <brouard@brouard.name>
   
 2010-04-26  brouard  <brouard@ined.fr>          * imach.c: With products of covariates (age or dummies or
           quantitatives), estimates of parameters were good but when
         * imach.c (Module): merging some libgsl code. Fixing computation          estimating variances the positions of newly created covariates
         of likelione (using inter/intrapolation if mle = 0) in order to          were wrongly assigned and results were wrong. Thank to Feinua_Sun!
         get same likelihood as if mle=1.  
         Some cleaning of code and comments added.  2022-05-24  Nicolas Brouard   <brouard@ined.fr>
   
 2009-10-29  brouard  <brouard@ined.fr>          * imach.c (Module): Some attempts to find a bug of wrong estimates
           of confidencce intervals with product in the equation modelC
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.  
   2022-05-15  Nicolas Brouard   <brouard@ined.fr>
 2006-06-30  Brouard Nicolas  <brouard@localhost>  
           * imach.c (Module):  Some minor improvements
         * imach.c (Module): Clarifications on computing e.j  
   2022-04-13  Brouard Nicolas  <brouard@brouard.name>
 2006-04-28  Brouard Nicolas  <brouard@localhost>  
           * imach.c (Module): Adding link to text data files
         * imach.c (Module): Yes the sum of survivors was wrong since  
         imach-114 because nhstepm was no more computed in the age  2022-04-11  Nicolas Brouard   <brouard@ined.fr>
         loop. Now we define nhstepma in the age loop.  
         (Module): In order to speed up (in case of numerous covariates) we          * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
         compute health expectancies (without variances) in a first step  
         and then all the health expectancies with variances or standard  2022-04-05  Brouard Nicolas  <brouard@ined.fr>
         deviation (needs data from the Hessian matrices) which slows the  
         computation.          * imach.c (Module): Fixed covariates (dummy or quantitative)
         In the future we should be able to stop the program is only health          with missing values have never been allowed but are ERRORS and
         expectancies and graph are needed without standard deviations.          program quits. Standard deviations of fixed covariates were
           wrongly computed. Mean and standard deviations of time varying
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          covariates are still not computed.
   
         * imach.iss (Module):  2022-03-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): bugs in evsi + population file added in htm output file          * 99r25 Improvements in fixing discrepancies between covariates
           missing in result line but in model. 
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
   *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
         * imach.c (Module):          * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
   
 2006-03-20  Brouard Nicolas  <brouard@localhost>  *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c (Module): <title> changed, corresponds to .htm file          * ./ (Module): Fixed bug on result:
         name. <head> headers where missing.  
   *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
         * Makefile (Module): 0.98g  
           * imach.c (Module): Fix bug on quitting after result lines!
         * imach.c (Module): Weights can have a decimal point as for          (Module): Version 0.99r21
         English (a comma might work with a correct LC_NUMERIC environment,  
         otherwise the weight is truncated).  2021-02-12  Nicolas Brouard   <brouard@ined.fr>
         Modification of warning when the covariates values are not 0 or  
         1.          * imach.c (Module): The use of a Windows BOM (huge) file is now an error
         Version 0.98g  
   
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
   
         * imach.c (Module): Comments concerning covariates added          *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
   
         * noreg-setup.iss (Module): Version 0.98f  2020-02-22  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup          *  (Module): imach.c Update mle=-3 (for computing Life expectancy
           and life table from the data without any state)
         * imach.c (Module): refinements in the computation of lli if  
         status=-2 in order to have more reliable computation if stepm is  2019-05-20  Brouard Nicolas  <brouard@ined.fr>
         not 1 month. Version 0.98f  
           * version.h: Summary: version 0.99.r19
 2006-03-15  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: Projection syntax simplified
         * imach.c (Module): Bug if status = -2, the loglikelihood was          We can now start projections, forward or backward, from the mean date
         computed as likelihood omitting the logarithm. Version O.98e          of inteviews up to or down to a number of years of projection:
           prevforecast=1 yearsfproj=15.3 mobil_average=0
 2006-03-14  Brouard Nicolas  <brouard@localhost>          or
           prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
         * imach.c (Module): varevsij Comments added explaining the second          or
         table of variances if popbased=1 .          prevbackcast=1 yearsbproj=12.3 mobil_average=1
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.          or
         (Module): Function pstamp added          prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
         (Module): Version 0.98d  
   2019-05-18  Brouard Nicolas  <brouard@ined.fr>
 2006-03-06  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: doxygen tex bug
         * imach.c (Module): Variance-covariance wrong links and  
         varian-covariance of ej. is needed (Saito).  2019-05-16  Brouard Nicolas  <brouard@ined.fr>
   
 2006-02-27  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: There was some wrong lines added
   
         * imach.c (Module): One freematrix added in mlikeli!  2019-05-09  Brouard Nicolas  <brouard@ined.fr>
   
 2006-02-26  Brouard Nicolas  <brouard@localhost>          * Makefile, imach.c: *** empty log message ***
   
         * imach.c (Module): Some improvements in processing parameter          * ChangeLog: Summary: C=
         filename with strsep.  
           * imach.c: Summary: Some updates
 2006-02-24  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: Before ncovmax
         * imach.c (Module): Memory leaks checks with valgrind and:  
         datafile was not closed, some imatrix were not freed and on matrix          * version.h: *** empty log message ***
         allocation too.  
           * imach.c: Summary: 0.99r18 unlimited number of individuals
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
   
         * strsep.c (Module): Inclusion because not in mingw32!!!  2018-12-13  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss.in (Module): IMACHSETUPVERSION added          * imach.c: Summary: Bug for young ages (<-30) will be in r17
   
         * noreg-setup.iss (Module): added to cvs tree  2018-12-05  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile (Module): IMACHSETUPVERSION added          * Makefile: Summary: 0.99r16
   
 2006-01-30  BROUARD Nicolas  <brouard@localhost>  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile (Module, Module): Latest Makefile          * imach.c: Summary: Some bugs fixed
   
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
 2006-01-27  BROUARD Nicolas  <brouard@localhost>          * imach.c:  Summary: Bug for young ages (<-30) will be in r17
   
         * noreg-setup.iss (Module): ADDED  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
 2006-01-24  BROUARD Nicolas  <brouard@localhost>          * imach.c: Summary: Some bugs fixed
   
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.  2018-05-01  Brouard Nicolas  <brouard@ined.fr>
   
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>          * imach.c:
           Summary: Bug fixed by providing frequencies only for non missing covariates
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg  
   2018-04-27  Brouard Nicolas  <brouard@ined.fr>
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X  
           * imach.c: Summary: some minor bugs
 2005-09-30    <lievre@PC_00595>  
   2018-04-21  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.  
         (Module): If the status is missing at the last wave but we know          * README.txt: *** empty log message ***
         that the person is alive, then we can code his/her status as -2  
         (instead of missing=-1 in earlier versions) and his/her          * imach.c: Summary: Some bugs fixed, valgrind tested
         contributions to the likelihood is 1 - Prob of dying from last  
         health status (= 1-p13= p11+p12 in the easiest case of somebody in  2018-04-20  Brouard Nicolas  <brouard@ined.fr>
         the healthy state at last known wave). Version is 0.98  
           * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
 2004-05-20  Brouard Nicolas  <brouard@localhost>  
           * imach.c:
         * imach.c (Repository):          Summary: Computing mean and stdeviation of fixed quantitative variables
         Agnes added a direct estimation of mortality (without the need of  
         computing period prevalence and differential mortality). Thus here  2018-04-19  Brouard Nicolas  <brouard@ined.fr>
         is version 0.97a which has been distributed to some people at  
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of          * imach.c: Summary: Some minor bugs fixed
         mortality using covariates is not done today. Estimating direct  
         mortality is a very different process because it doesn't need          * version.h: *** empty log message ***
         interpolation because it is easy to get the lx from the force of  
         the mortality mux in the simplest case as for a Gompertz (log mux  2018-02-27  Brouard Nicolas  <brouard@ined.fr>
         = a + b*x . But we have been able to incorporate the new code  
         within former imach program (0.96d) without deteriorating too much          * imach.c: *** empty log message ***
         the understanding of the program.  
           * imach.c: Summary: Adding second argument for quitting
 2003-06-25    <brouard@BROUARD>  
   2018-02-21  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't  
         exist so I changed back to asctime which exists.          * Makefile, README.txt, imach.c: Summary: 0.99r15
         (Module): Version 0.96b          New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
   
 2003-06-24    <brouard@BROUARD>  2017-07-20  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Some bugs corrected for windows. Also, when          * imach.c: Summary: temporary working
         mle=-1 a template is output in file "or"mypar.txt with the design  
         of the covariance matrix to be input.  2017-07-19  Brouard Nicolas  <brouard@ined.fr>
   
 2003-06-25  Brouard Nicolas  <brouard@homebrou>          * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
   
         * imach.c (Repository): Duplicated warning errors corrected.  2017-07-17  Brouard Nicolas  <brouard@ined.fr>
         (Repository): Elapsed time after each iteration is now output. It  
         helps to forecast when convergence will be reached. Elapsed time          * imach.c: Summary: BOM files can be read now
         is stamped in powell.  We created a new html file for the graphs  
         concerning matrix of covariance. It has extension -cov.htm.  2017-06-30  Brouard Nicolas  <brouard@ined.fr>
   
 2003-06-23  Brouard Nicolas  <brouard@homebrou>          * imach.c: Summary: Graphs improvements
   
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.          * imach.c: Summary: Saito's color
   
 2003-06-18  Brouard Nicolas  <brouard@homebrou>  2017-06-29  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96          * imach.c: Summary: Version 0.99r14
   
 2003-06-17  Brouard Nicolas  <brouard@homebrou>  2017-06-27  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: More documentation on projections
         * imach.c (Repository): Check when date of death was earlier that  
         current date of interview. It may happen when the death was just          * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
         prior to the death. In this case, dh was negative and likelihood  
         was wrong (infinity). We still send an "Error" but patch by          * imach.c: Summary: Some bug with rint
         assuming that the date of death was just one stepm after the  
         interview.  2017-05-24  Brouard Nicolas  <brouard@ined.fr>
         (Repository): Because some people have very long ID (first column)  
         we changed int to long in num[] and we added a new lvector for          * imach.c: *** empty log message ***
         memory allocation. But we also truncated to 8 characters (left  
         truncation)  2017-05-23  Brouard Nicolas  <brouard@ined.fr>
   
         (Repository): No more line truncation errors.          * imach.c: Summary: Code into subroutine, cleanings
   
 2003-06-14  Brouard Nicolas  <brouard@homebrou>  2017-05-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Repository): Add of a routine likelione (likelihood          * imach.c:
         only once) which prints on a text file          Summary: backprojection and confidence intervals of backprevalence
         (ilk) the contributions to the likelihood for each  
         individual/wave.  2017-05-13  Brouard Nicolas  <brouard@ined.fr>
   
 2003-06-13  Brouard Nicolas  <brouard@homebrou>          * imach.c: Summary: temporary save for backprojection
         * imach.c (Repository): Replace "freqsummary" at a correct  
         place. It differs from routine "prevalence" which may be called          * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
         many times. Probs is memory consuming and must be used with  
         parcimony.  2017-04-26  Brouard Nicolas  <brouard@ined.fr>
   
 2003-06-17    <brouard@BROUARD>          * imach.c: Summary: imach 0.99r13 Some bugs fixed
   
         * timeval.h (Module): Added included file to make use of          * imach.c: Summary: Labels in graphs
         gettimeofday working on win32 with cygwin.  
   2017-04-24  Brouard Nicolas  <brouard@ined.fr>
 2003-05-16  Brouard Nicolas  <brouard@brouard>  
         * imach.c (Module): Insert of a warning if the delay between two          * imach.c: Summary: to save
         waves is negative.  
   2017-04-18  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module):  
           * imach.c: *** empty log message ***
 2003-05-03    <brouard@BROUARD>  
   2017-04-05  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Some cleaning  
           * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
 2003-03-28    <brouard@BROUARD>  
         * imach.c (Module): In version up to 0.92 likelihood was computed  2017-04-04  Brouard Nicolas  <brouard@ined.fr>
         as if date of death was unknown. Death was treated as any other  
         health state: the date of the interview describes the actual state          * imach.c: Summary: Gnuplot indexations fixed (humm)
         and not the date of a change in health state. The former idea was  
         to consider that at each interview the state was recorded          * imach.c:
         (healthy, disable or death) and IMaCh was corrected; but when we          Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
         introduced the exact date of death then we should have modified  
         the contribution of an exact death to the likelihood. This new  2017-04-03  Brouard Nicolas  <brouard@ined.fr>
         contribution is smaller and very dependent of the step unit  
         stepm. It is no more the probability to die between last interview          * imach.c: Summary: Version 0.99r12
         and month of death but the probability to survive from last          Some cleanings, conformed with updated documentation.
         interview up to one month before death multiplied by the  
         probability to die within a month. Thanks to Chris  2017-03-30  Brouard Nicolas  <brouard@ined.fr>
         Jackson for correcting this bug.  Former versions increased  
         mortality artificially. The bad side is that we add another loop          * version.h: *** empty log message ***
   
           * version.h: Summary:0.99r11
         which slows down the processing. The difference can be up to 10%  
   2017-03-29  Brouard Nicolas  <brouard@ined.fr>
   
         lower mortality.          * imach.c: Summary: Temp
   
   2017-03-27  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Temporary
   
 2002-05-30    <brouard@BROUARD>  2017-03-08  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
   
           * imach.c: Summary: Fixing data parameter line
   
         *  2016-12-15  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: 0.99 in progress
   
   2016-09-15  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Add correlation matrix of one-step          * imach.c: *** empty log message ***
   
           * imach.c: Summary: not working
         probabilities and covariance matrix  
   2016-09-08  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: continue
   
   2016-09-07  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Starting values from frequencies
   
           * imach.c: *** empty log message ***
   
   2016-09-02  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2016-08-30  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Fixing a lots
   
   2016-08-29  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: gnuplot problem in Back projection to fix
   
           * imach.c: Summary: Better
   
   2016-08-26  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: Improvement in Powell output in order to copy and paste
   
           * imach.c: Summary: Starting tests of 0.99
   
           * imach.c: Summary: to valgrind
   
   2016-08-25  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2016-08-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
           * imach.c: Summary: not working
   
   2016-08-22  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: not working
   
           * imach.c: Summary: Not working
   
   2016-07-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Completing for func too
   
   2016-07-22  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Fixing some arrays, still debugging
   
   2016-07-21  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
   
   2016-07-12  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: temp
   
           * imach.c: Summary: saving but not running
   
   2016-07-01  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Fixes
   
   2016-02-19  Brouard Nicolas  <brouard@ined.fr>
   
           * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
   
           * setup.iss, Makefile, version.h: *** empty log message ***
   
           * imach.c: Summary: temporary
   
   2016-02-17  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Probably last 0.98 stable version 0.98r6
   
   2016-02-16  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: minor bug
   
           * imach.c: Summary: 0.99r2
   
   2016-02-15  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2016-02-12  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: 0.99 Back projections
   
   2015-12-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Experimental backcast
   
   2015-12-18  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: 0.98r4 Warning and status=-2
   
           Version 0.98r4 is now:
            - displaying an error when status is -1, date of interview unknown and date of death known;
            - permitting a status -2 when the vital status is unknown at a known date of right truncation.
           Older changes concerning s=-2, dating from 2005 have been supersed.
   
           * Makefile: *** empty log message ***
   
   2015-12-16  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: *** empty log message ***
   
           * imach.c: Summary: 0.98r4 working
   
           * Makefile: Summary: linuxrpm added
   
           * Makefile: *** empty log message ***
   
           * imach.c: Summary: temporary not working
   
   2015-12-11  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: 0.98r4
   
   2015-12-08  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: *** empty log message ***
   
   2015-11-21  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile:
           Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
   
           * imach.c: Summary: minor typo
   
           * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
   
           Author: Nicolas Brouard
   
   2015-11-18  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Start working on projected prevalences
   
   2015-11-17  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Adding ftolpl parameter
           Author: N Brouard
   
           We had difficulties to get smoothed confidence intervals. It was due
           to the period prevalence which wasn't computed accurately. The inner
           parameter ftolpl is now an outer parameter of the .imach parameter
           file after estepm. If ftolpl is small 1.e-4 and estepm too,
           computation are long.
   
           * version.h: *** empty log message ***
   
           * imach.c: Summary: temporary
   
   2015-10-27  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: *** empty log message ***
   
           * setup.iss.in: Summary: some new subdirs
   
           * imach.c: *** empty log message ***
   
           * setup.iss.in:
           Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
   
   2015-10-24  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2015-10-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: 0.98r3 some clarification for graphs on likelihood contributions
   
   2015-10-01  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Some new graphs of contribution to likelihood
   
   2015-09-30  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile:
           Summary: Version read from version.h, itself read with cmake
   
           * imach.c: Summary: looking at better estimation of the hessian
   
           Also a better criteria for convergence to the period prevalence And
           therefore adding the number of years needed to converge. (The
           prevalence in any alive state shold sum to one
   
           * Makefile: *** empty log message ***
   
   2015-09-22  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: Adding some overall graph on contribution to likelihood. Might change
   
   2015-09-15  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: *** empty log message ***
   
           * imach.c: Summary: 0.98r0
   
           - Some new graphs like survival functions
           - Some bugs fixed like model=1+age+V2.
   
           * ChangeLog, Makefile: Summary: 0.98r0
   
           * CMakeLists.txt: Summary: Some tests for setup.iss
   
   2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
           *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
   
   2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
   
           *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
   
   2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
           *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
   
   2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
   
           * imach.c (Module): Merging 1.61 to 1.162
   
   2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
   
           * prevlim.h (Module): 
   
   2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
   
           * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
           (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
   
   2010-04-29  brouard  <brouard@ined.fr>
   
           * imach.c (Module): Checking covariates for more complex models
           than V1+V2. A lot of change to be done. Unstable.
   
   2010-04-26  brouard  <brouard@ined.fr>
   
           * imach.c (Module): merging some libgsl code. Fixing computation
           of likelione (using inter/intrapolation if mle = 0) in order to
           get same likelihood as if mle=1.
           Some cleaning of code and comments added.
   
   2009-10-29  brouard  <brouard@ined.fr>
   
           * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
   
   2006-06-30  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Clarifications on computing e.j
   
   2006-04-28  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Yes the sum of survivors was wrong since
           imach-114 because nhstepm was no more computed in the age
           loop. Now we define nhstepma in the age loop.
           (Module): In order to speed up (in case of numerous covariates) we
           compute health expectancies (without variances) in a first step
           and then all the health expectancies with variances or standard
           deviation (needs data from the Hessian matrices) which slows the
           computation.
           In the future we should be able to stop the program is only health
           expectancies and graph are needed without standard deviations.
   
   2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.iss (Module): 
   
           * imach.c (Module): bugs in evsi + population file added in htm output file
   
   2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): 
   
   2006-03-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): <title> changed, corresponds to .htm file
           name. <head> headers where missing.
   
           * Makefile (Module): 0.98g
   
           * imach.c (Module): Weights can have a decimal point as for
           English (a comma might work with a correct LC_NUMERIC environment,
           otherwise the weight is truncated).
           Modification of warning when the covariates values are not 0 or
           1. 
           Version 0.98g
   
   2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): Comments concerning covariates added
   
           * noreg-setup.iss (Module): Version 0.98f
   
           * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
   
           * imach.c (Module): refinements in the computation of lli if
           status=-2 in order to have more reliable computation if stepm is
           not 1 month. Version 0.98f
   
   2006-03-15  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Bug if status = -2, the loglikelihood was
           computed as likelihood omitting the logarithm. Version O.98e
   
   2006-03-14  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): varevsij Comments added explaining the second
           table of variances if popbased=1 .
           (Module): Covariances of eij, ekl added, graphs fixed, new html link.
           (Module): Function pstamp added
           (Module): Version 0.98d 
   
   2006-03-06  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Variance-covariance wrong links and
           varian-covariance of ej. is needed (Saito).
   
   2006-02-27  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): One freematrix added in mlikeli!
   
   2006-02-26  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Some improvements in processing parameter
           filename with strsep.
   
   2006-02-24  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Memory leaks checks with valgrind and:
           datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
   
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * strsep.c (Module): Inclusion because not in mingw32!!!
   
           * setup.iss.in (Module): IMACHSETUPVERSION added
   
           * noreg-setup.iss (Module): added to cvs tree
   
           * Makefile (Module): IMACHSETUPVERSION added
   
   2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
           * Makefile (Module, Module): Latest Makefile
   
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
           * noreg-setup.iss (Module): ADDED
   
   2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
           * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
   2005-09-30    <lievre@PC_00595>
   
           * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
           that the person is alive, then we can code his/her status as -2
           (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
           health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98 
   
   2004-05-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Repository): 
           Agnes added a direct estimation of mortality (without the need of
           computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
           REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
           mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
           the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
           within former imach program (0.96d) without deteriorating too much
           the understanding of the program. 
   
   2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module): 
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
           which slows down the processing. The difference can be up to 10%
           lower mortality.
   
   2002-05-30    <brouard@BROUARD>
           * 
           * imach.c (Module): Add correlation matrix of one-step
           probabilities and covariance matrix
   
   
   
   
   
Removed from v.1.34  
changed lines
  Added in v.1.54

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