[BACK]Return to ChangeLog CVS log [TXT] [DIR] Up to [Local Repository] / imach / src

Diff for /imach/src/ChangeLog between versions 1.38 and 1.68

version 1.38, 2019/05/09 15:06:14 version 1.68, 2024/04/24 20:53:06
Line 1 Line 1
 2018-05-02  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2024-04-24  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Some bugs fixed          * (Module): This version comes late after having tested
           successfully the praxis C version of Buckhardt.  But Buckardt's
 2018-05-01  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          version was difficult to read and Gegenfurtner's version had a few
           typos which made its results less reliable than Buckhardt's
         * imach.c:          results.  The most important work consisted in retyping the Brent
         Summary: Bug fixed by providing frequencies only for non missing covariates          original PRAXIS program written in Algol W (published with errors,
           ommitting the transposition of matrix V before its QR reduction
 2018-04-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          from Golub. I used the recent "awe" compiler from Gkynn Webster.
           The awe library had errors, for example in arc tangent function
         * imach.c: Summary: some minor bugs          which have been fixed.
   
 2018-04-21  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          The main objective was to get identical results with the three
           versions: (1) Algol W, (2) Buckhardt'C version as well (3)
         * README.txt: *** empty log message ***          Gegenfürtner C versions on the various test functions published by
           Brent in 1973 in Algol W.
         * imach.c: Summary: Some bugs fixed, valgrind tested  
           Also, in order to compare them, the random function had to produce
 2018-04-20  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          the same sequence for the 3 softwares. The random function used in
           imach corresponds to original Brent's random function written in
         * Makefile, README.txt, setup.iss: Summary: imach 0.99r16          Algol W.  Other point, in Algol W, the arrays of dimension n are
           'normal' mathematical arrays starting from 1 to n. But this is a
         * imach.c:          real issue in C where, by default, arrays are starting from 0 to
         Summary: Computing mean and stdeviation of fixed quantitative variables          n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
           seen that authors while trying to mimick original Brent Algol W
 2018-04-19  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          code are hesitating by changing either a loop originally from 1 to
           n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
         * imach.c: Summary: Some minor bugs fixed          shifting the index from original X(I) in Algol W to x[i-1] in C.
           But as IMaCh is using, since the beginning, the Numerical Recipes
         * version.h: *** empty log message ***          functions vector or matrix, I changed Geggenfürtner code to mimick
           the original Algol W arrays. Thus the X(I) is translated in C as
 2018-02-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          x[i] which minimizes the errors. The Golub QR algorithm was
           published in Algol with overflow errors which were reproduced in
         * imach.c: *** empty log message ***          Brent's Algol W code. Buckhardt code fixed these errors which are
           much more problematic in C than in Algol W.  Thus Buckhardt code
         * imach.c: Summary: Adding second argument for quitting          seems very safe, but i haven't chosen it for IMaCh because the C
           style is horrible and almost unreadable compared to Gegenfürtner
 2018-02-21  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          CO code which is very close to Brent's original. Also what makes
           Buckhardt code more difficult to read is, instead of passing the
         * Makefile, README.txt, imach.c: Summary: 0.99r15          minimum of parameters in the functions calls, as it is in Algol
           Brent's code or Gegenfürtner's code, the list of parameters is
         New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c          high. For example, the flin function LONG REAL PROCEDURE FLIN
           (LONG REAL VALUE L) has only one parameter in Algol W, the
 2017-07-20  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          Gegenfürtner flin function had two parameters: static double
           flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
         * imach.c: Summary: temporary working          function has 14 parameters which makes the code unreadable and
           useless. Gegenfürtner used a lot of static variables or functions
 2017-07-19  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          which I tried to minimize. Also in Gegefürtner, array dimensions
           were fixed to N. In my adaptation the flin is static double
         * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)          flin(double l, int j) and the parameter used are global variables.
   
 2017-07-17  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2023-06-14  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: BOM files can be read now          * imach.c (Module): Testing if conjugate gradient could be quicker
           when lot of variables POWELLORIGINCONJUGATE
 2017-06-30  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2023-05-23  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Graphs improvements  
           * imach.c (Module): Fixed PROB_r 
         * imach.c: Summary: Saito's color  
   2023-05-22  Nicolas Brouard   <brouard@ined.fr>
 2017-06-29  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): In the ILK....txt file, the number of columns
         * imach.c: Summary: Version 0.99r14          before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
   
 2017-06-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2023-05-08  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: More documentation on projections          *  (Module): Error V0 when result:. and model 1+age+V1: fixed
   
         * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)  2023-04-29  Nicolas Brouard  <brouard@ined.fr>
   
         * imach.c: Summary: Some bug with rint          * imach.c (Module): Inverting the model equation and fixingg bugs
           in the drawings
 2017-05-24  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
   
         * imach.c: *** empty log message ***  2023-04-24  Nicolas Brouard  <brouard@ined.fr>
   
 2017-05-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): some bugs in printinggnuplot 
   
         * imach.c: Summary: Code into subroutine, cleanings  2022-09-19  Nicolas Brouard   <brouard@ined.fr>
   
 2017-05-18  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): Version 0.99r42 needed a newer version of
           Gnuplot. But newer version 0.99r43 should run with the Gnuplot
         * imach.c:          version 5.0 or 5.1 distributed with IMaCh.
         Summary: backprojection and confidence intervals of backprevalence  
   2022-09-18  Nicolas Brouard   <brouard@ined.fr>
 2017-05-13  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): Fixing when a state in the data is 0 or higher
         * imach.c: Summary: temporary save for backprojection          than lstate+ndeath. Fixing the plot of contribution to Likelihood.
   
         * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)  2022-09-16  Nicolas Brouard   <brouard@ined.fr>
   
 2017-04-26  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you  Feinuo
   
         * imach.c: Summary: imach 0.99r13 Some bugs fixed  2022-09-14  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Labels in graphs          * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
   
 2017-04-24  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2022-09-14  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: to save          * imach.c (Module): Version 0.99r39 with colored dummy covariates
           (fixed or time varying), using new last columns of
 2017-04-18  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          ILK_parameter.txt file.
   
         * imach.c: *** empty log message ***  2022-09-11  Nicolas Brouard   <brouard@ined.fr>
   
 2017-04-05  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): Adding timevarying products of any kinds,
           should work before shifting cotvar from ncovcol+nqv columns in
         * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1          order to have a correspondance between the column of cotvar and
           the id of column.
 2017-04-04  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          (Module): Some cleaning and adding covariates in ILK.txt
   
         * imach.c: Summary: Gnuplot indexations fixed (humm)  2022-09-09  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c:          * imach.c (Module): Many improvements for fixing products of fixed
         Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3          timevarying as well as fixed * fixed, and test with quantitative
           covariate.
 2017-04-03  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-09-04  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Version 0.99r12  
           * imach.c (Module): Now the easy runs i.e. without result or
         Some cleanings, conformed with updated documentation.          model=1+age only did not work. The defautl combination should be 1
           and not 0 because everything hasn't been tranformed yet.
 2017-03-30  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-09-02  Nicolas Brouard   <brouard@ined.fr>
         * version.h: *** empty log message ***  
           * imach.c: Version 0.99r35 because it outputs same results with
         * version.h: Summary:0.99r11          1+age+V1+V1*age for females and 1+age for females only
           (education=1 noweight)
 2017-03-29  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-08-31  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Temp  
           * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
 2017-03-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-08-21  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Temporary  
           * imach.c (Module): Version 0.99r33 A lot of changes in
 2017-03-08  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          reassigning covariates: my first idea was that people will always
           use the first covariate V1 into the model but in fact they are
         * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed          producing data with many covariates and can use an equation model
           with some of the covariate; it means that in a model V2+V3 instead
         * imach.c: Summary: Fixing data parameter line          of codtabm(k,Tvaraff[j]) which calculates for combination k, for
           three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
 2016-12-15  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          the equation model is restricted to two variables only (V2, V3)
           and the combination for V2 should be codtabm(k,1) instead of
         * imach.c: Summary: 0.99 in progress          (codtabm(k,2), and the code should be
           codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
 2016-09-15  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          made. All of these should be simplified once a day like we did in
           hpxij() for example by using precov[nres] which is computed in
         * imach.c: *** empty log message ***          decoderesult for each nres of each resultline. Loop should be done
           on the equation model globally by distinguishing only product with
         * imach.c: Summary: not working          age (which are changing with age) and no more on type of
           covariates, single dummies, single covariates. 
 2016-09-08  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-08-06  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: continue  
           *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
 2016-09-07  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-08-03  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Starting values from frequencies  
           *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
         * imach.c: *** empty log message ***  
   2022-07-25  Brouard Nicolas  <brouard@brouard.name>
 2016-09-02  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): Error cptcovn instead of nsd in bmij (was
         * imach.c: *** empty log message ***          coredumped, revealed by Feiuno, thank you.
   
 2016-08-30  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2022-07-23  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Fixing a lots          * r29 W and not sqrt(Wald)
   
 2016-08-29  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2022-07-22  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: gnuplot problem in Back projection to fix          *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
   
         * imach.c: Summary: Better  2022-06-02  Brouard Nicolas  <brouard@brouard.name>
   
 2016-08-26  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): Adding the Wald tests from the log to the main
           htm for better display of the maximum likelihood estimators.
         * imach.c:  
         Summary: Improvement in Powell output in order to copy and paste  2022-05-30  Brouard Nicolas  <brouard@brouard.name>
   
         Author:          * imach.c: With products of covariates (age or dummies or
           quantitatives), estimates of parameters were good but when
         * imach.c: Summary: Starting tests of 0.99          estimating variances the positions of newly created covariates
           were wrongly assigned and results were wrong. Thank to Feinua_Sun!
         * imach.c: Summary: to valgrind  
   2022-05-24  Nicolas Brouard   <brouard@ined.fr>
 2016-08-25  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): Some attempts to find a bug of wrong estimates
         * imach.c: *** empty log message ***          of confidencce intervals with product in the equation modelC
   
 2016-08-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2022-05-15  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c (Module):  Some minor improvements
   
         * imach.c: Summary: not working  2022-04-13  Brouard Nicolas  <brouard@brouard.name>
   
 2016-08-22  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): Adding link to text data files
   
         * imach.c: Summary: not working  2022-04-11  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Not working          * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
   
 2016-07-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2022-04-05  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Completing for func too          * imach.c (Module): Fixed covariates (dummy or quantitative)
           with missing values have never been allowed but are ERRORS and
 2016-07-22  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          program quits. Standard deviations of fixed covariates were
           wrongly computed. Mean and standard deviations of time varying
         * imach.c: Summary: Fixing some arrays, still debugging          covariates are still not computed.
   
 2016-07-21  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2022-03-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c:          * 99r25 Improvements in fixing discrepancies between covariates
         Summary: 0.99 working (more or less) for Asian Workshop on multitate methods          missing in result line but in model. 
   
 2016-07-12  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
           * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
         * imach.c: Summary: temp  
   *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: saving but not running  
           * ./ (Module): Fixed bug on result:
 2016-07-01  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Fixes  
           * imach.c (Module): Fix bug on quitting after result lines!
 2016-02-19  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          (Module): Version 0.99r21
   
         * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7  2021-02-12  Nicolas Brouard   <brouard@ined.fr>
   
         * setup.iss, Makefile, version.h: *** empty log message ***          * imach.c (Module): The use of a Windows BOM (huge) file is now an error
   
         * imach.c: Summary: temporary  
   2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
 2016-02-17  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
         * imach.c: Summary: Probably last 0.98 stable version 0.98r6  
   2020-02-22  Brouard Nicolas  <brouard@ined.fr>
 2016-02-16  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           *  (Module): imach.c Update mle=-3 (for computing Life expectancy
         * imach.c: Summary: minor bug          and life table from the data without any state)
   
         * imach.c: Summary: 0.99r2  2019-05-20  Brouard Nicolas  <brouard@ined.fr>
   
 2016-02-15  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * version.h: Summary: version 0.99.r19
   
         * imach.c: *** empty log message ***          * imach.c: Summary: Projection syntax simplified
           We can now start projections, forward or backward, from the mean date
 2016-02-12  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          of inteviews up to or down to a number of years of projection:
           prevforecast=1 yearsfproj=15.3 mobil_average=0
         * imach.c: Summary: 0.99 Back projections          or
           prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
 2015-12-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          or
           prevbackcast=1 yearsbproj=12.3 mobil_average=1
         * imach.c: Summary: Experimental backcast          or
           prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
 2015-12-18  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2019-05-18  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.98r4 Warning and status=-2  
           * imach.c: Summary: doxygen tex bug
         Version 0.98r4 is now:  
          - displaying an error when status is -1, date of interview unknown and date of death known;  2019-05-16  Brouard Nicolas  <brouard@ined.fr>
          - permitting a status -2 when the vital status is unknown at a known date of right truncation.  
         Older changes concerning s=-2, dating from 2005 have been supersed.          * imach.c: Summary: There was some wrong lines added
   
         * Makefile: *** empty log message ***  2019-05-09  Brouard Nicolas  <brouard@ined.fr>
   
 2015-12-16  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * Makefile, imach.c: *** empty log message ***
   
         * Makefile: *** empty log message ***          * ChangeLog: Summary: C=
   
         * imach.c: Summary: 0.98r4 working          * imach.c: Summary: Some updates
   
         * Makefile: Summary: linuxrpm added          * imach.c: Summary: Before ncovmax
   
         * Makefile: *** empty log message ***          * version.h: *** empty log message ***
   
         * imach.c: Summary: temporary not working          * imach.c: Summary: 0.99r18 unlimited number of individuals
           The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
 2015-12-11  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2018-12-13  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.98r4  
           * imach.c: Summary: Bug for young ages (<-30) will be in r17
 2015-12-08  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2018-12-05  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * Makefile: Summary: 0.99r16
 2015-11-21  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * Makefile:  
         Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more          * imach.c: Summary: Some bugs fixed
   
         * imach.c: Summary: minor typo  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional          * imach.c:  Summary: Bug for young ages (<-30) will be in r17
   
         Author: Nicolas Brouard  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
 2015-11-18  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: Some bugs fixed
   
         * imach.c: Summary: Start working on projected prevalences  2018-05-01  Brouard Nicolas  <brouard@ined.fr>
   
 2015-11-17  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c:
           Summary: Bug fixed by providing frequencies only for non missing covariates
         * imach.c: Summary: Adding ftolpl parameter  
         Author: N Brouard  2018-04-27  Brouard Nicolas  <brouard@ined.fr>
   
         We had difficulties to get smoothed confidence intervals. It was due          * imach.c: Summary: some minor bugs
         to the period prevalence which wasn't computed accurately. The inner  
         parameter ftolpl is now an outer parameter of the .imach parameter  2018-04-21  Brouard Nicolas  <brouard@ined.fr>
         file after estepm. If ftolpl is small 1.e-4 and estepm too,  
         computation are long.          * README.txt: *** empty log message ***
   
         * version.h: *** empty log message ***          * imach.c: Summary: Some bugs fixed, valgrind tested
   
         * imach.c: Summary: temporary  2018-04-20  Brouard Nicolas  <brouard@ined.fr>
   
 2015-10-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
   
         * Makefile: *** empty log message ***          * imach.c:
           Summary: Computing mean and stdeviation of fixed quantitative variables
         * setup.iss.in: Summary: some new subdirs  
   2018-04-19  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * imach.c: Summary: Some minor bugs fixed
         * setup.iss.in:  
         Summary: Adding gnuplot 5.1 with bin and etc for pango fonts          * version.h: *** empty log message ***
   
 2015-10-24  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2018-02-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
 2015-10-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: Adding second argument for quitting
   
         * imach.c:  2018-02-21  Brouard Nicolas  <brouard@ined.fr>
         Summary: 0.98r3 some clarification for graphs on likelihood contributions  
           * Makefile, README.txt, imach.c: Summary: 0.99r15
 2015-10-01  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
   
         * imach.c: Summary: Some new graphs of contribution to likelihood  2017-07-20  Brouard Nicolas  <brouard@ined.fr>
   
 2015-09-30  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: temporary working
   
         * Makefile:  2017-07-19  Brouard Nicolas  <brouard@ined.fr>
         Summary: Version read from version.h, itself read with cmake  
           * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
         * imach.c: Summary: looking at better estimation of the hessian  
   2017-07-17  Brouard Nicolas  <brouard@ined.fr>
         Also a better criteria for convergence to the period prevalence And  
         therefore adding the number of years needed to converge. (The          * imach.c: Summary: BOM files can be read now
         prevalence in any alive state shold sum to one  
   2017-06-30  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * imach.c: Summary: Graphs improvements
 2015-09-22  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c: Summary: Saito's color
         * imach.c:  
         Summary: Adding some overall graph on contribution to likelihood. Might change  2017-06-29  Brouard Nicolas  <brouard@ined.fr>
   
 2015-09-15  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: Version 0.99r14
   
         * Makefile: *** empty log message ***  2017-06-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r0          * imach.c: Summary: More documentation on projections
   
         - Some new graphs like suvival functions          * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
         - Some bugs fixed like model=1+age+V2.  
           * imach.c: Summary: Some bug with rint
         * ChangeLog, Makefile: Summary: 0.98r0  
   2017-05-24  Brouard Nicolas  <brouard@ined.fr>
         * CMakeLists.txt: Summary: Some tests for setup.iss  
           * imach.c: *** empty log message ***
 2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  
   2017-05-23  Brouard Nicolas  <brouard@ined.fr>
         *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc  
           * imach.c: Summary: Code into subroutine, cleanings
 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>  
   2017-05-18  Brouard Nicolas  <brouard@ined.fr>
         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.  
           * imach.c:
 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>          Summary: backprojection and confidence intervals of backprevalence
   
         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)  2017-05-13  Brouard Nicolas  <brouard@ined.fr>
   
 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>          * imach.c: Summary: temporary save for backprojection
   
         * imach.c (Module): Merging 1.61 to 1.162          * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
   
 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>  2017-04-26  Brouard Nicolas  <brouard@ined.fr>
   
         * prevlim.h (Module):          * imach.c: Summary: imach 0.99r13 Some bugs fixed
   
 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>          * imach.c: Summary: Labels in graphs
   
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...  2017-04-24  Brouard Nicolas  <brouard@ined.fr>
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.  
           * imach.c: Summary: to save
 2010-04-29  brouard  <brouard@ined.fr>  
   2017-04-18  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Checking covariates for more complex models  
         than V1+V2. A lot of change to be done. Unstable.          * imach.c: *** empty log message ***
   
 2010-04-26  brouard  <brouard@ined.fr>  2017-04-05  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): merging some libgsl code. Fixing computation          * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
         of likelione (using inter/intrapolation if mle = 0) in order to  
         get same likelihood as if mle=1.  2017-04-04  Brouard Nicolas  <brouard@ined.fr>
         Some cleaning of code and comments added.  
           * imach.c: Summary: Gnuplot indexations fixed (humm)
 2009-10-29  brouard  <brouard@ined.fr>  
           * imach.c:
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.          Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
   
 2006-06-30  Brouard Nicolas  <brouard@localhost>  2017-04-03  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Clarifications on computing e.j          * imach.c: Summary: Version 0.99r12
           Some cleanings, conformed with updated documentation.
 2006-04-28  Brouard Nicolas  <brouard@localhost>  
   2017-03-30  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Yes the sum of survivors was wrong since  
         imach-114 because nhstepm was no more computed in the age          * version.h: *** empty log message ***
         loop. Now we define nhstepma in the age loop.  
         (Module): In order to speed up (in case of numerous covariates) we          * version.h: Summary:0.99r11
         compute health expectancies (without variances) in a first step  
         and then all the health expectancies with variances or standard  2017-03-29  Brouard Nicolas  <brouard@ined.fr>
         deviation (needs data from the Hessian matrices) which slows the  
         computation.          * imach.c: Summary: Temp
         In the future we should be able to stop the program is only health  
         expectancies and graph are needed without standard deviations.  2017-03-27  Brouard Nicolas  <brouard@ined.fr>
   
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * imach.c: Summary: Temporary
   
         * imach.iss (Module):  2017-03-08  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): bugs in evsi + population file added in htm output file          * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
   
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * imach.c: Summary: Fixing data parameter line
   
         * imach.c (Module):  2016-12-15  Brouard Nicolas  <brouard@ined.fr>
   
 2006-03-20  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: 0.99 in progress
   
         * imach.c (Module): <title> changed, corresponds to .htm file  2016-09-15  Brouard Nicolas  <brouard@ined.fr>
         name. <head> headers where missing.  
           * imach.c: *** empty log message ***
         * Makefile (Module): 0.98g  
           * imach.c: Summary: not working
         * imach.c (Module): Weights can have a decimal point as for  
         English (a comma might work with a correct LC_NUMERIC environment,  2016-09-08  Brouard Nicolas  <brouard@ined.fr>
         otherwise the weight is truncated).  
         Modification of warning when the covariates values are not 0 or          * imach.c: Summary: continue
         1.  
         Version 0.98g  2016-09-07  Brouard Nicolas  <brouard@ined.fr>
   
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * imach.c: Summary: Starting values from frequencies
   
         * imach.c (Module): Comments concerning covariates added          * imach.c: *** empty log message ***
   
         * noreg-setup.iss (Module): Version 0.98f  2016-09-02  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup          * imach.c: *** empty log message ***
   
         * imach.c (Module): refinements in the computation of lli if  2016-08-30  Brouard Nicolas  <brouard@ined.fr>
         status=-2 in order to have more reliable computation if stepm is  
         not 1 month. Version 0.98f          * imach.c: Summary: Fixing a lots
   
 2006-03-15  Brouard Nicolas  <brouard@localhost>  2016-08-29  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Bug if status = -2, the loglikelihood was          * imach.c: Summary: gnuplot problem in Back projection to fix
         computed as likelihood omitting the logarithm. Version O.98e  
           * imach.c: Summary: Better
 2006-03-14  Brouard Nicolas  <brouard@localhost>  
   2016-08-26  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): varevsij Comments added explaining the second  
         table of variances if popbased=1 .          * imach.c:
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.          Summary: Improvement in Powell output in order to copy and paste
         (Module): Function pstamp added  
         (Module): Version 0.98d          * imach.c: Summary: Starting tests of 0.99
   
 2006-03-06  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: to valgrind
   
         * imach.c (Module): Variance-covariance wrong links and  2016-08-25  Brouard Nicolas  <brouard@ined.fr>
         varian-covariance of ej. is needed (Saito).  
           * imach.c: *** empty log message ***
 2006-02-27  Brouard Nicolas  <brouard@localhost>  
   2016-08-23  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): One freematrix added in mlikeli!  
           * imach.c: *** empty log message ***
 2006-02-26  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: not working
         * imach.c (Module): Some improvements in processing parameter  
         filename with strsep.  2016-08-22  Brouard Nicolas  <brouard@ined.fr>
   
 2006-02-24  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: not working
   
         * imach.c (Module): Memory leaks checks with valgrind and:          * imach.c: Summary: Not working
         datafile was not closed, some imatrix were not freed and on matrix  
         allocation too.  2016-07-23  Brouard Nicolas  <brouard@ined.fr>
   
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * imach.c: Summary: Completing for func too
   
         * strsep.c (Module): Inclusion because not in mingw32!!!  2016-07-22  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss.in (Module): IMACHSETUPVERSION added          * imach.c: Summary: Fixing some arrays, still debugging
   
         * noreg-setup.iss (Module): added to cvs tree  2016-07-21  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile (Module): IMACHSETUPVERSION added          * imach.c:
           Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
 2006-01-30  BROUARD Nicolas  <brouard@localhost>  
   2016-07-12  Brouard Nicolas  <brouard@ined.fr>
         * Makefile (Module, Module): Latest Makefile  
           * imach.c: Summary: temp
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe  
           * imach.c: Summary: saving but not running
 2006-01-27  BROUARD Nicolas  <brouard@localhost>  
   2016-07-01  Brouard Nicolas  <brouard@ined.fr>
         * noreg-setup.iss (Module): ADDED  
           * imach.c: Summary: Fixes
 2006-01-24  BROUARD Nicolas  <brouard@localhost>  
   2016-02-19  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.  
           * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>  
           * setup.iss, Makefile, version.h: *** empty log message ***
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg  
           * imach.c: Summary: temporary
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X  
   2016-02-17  Brouard Nicolas  <brouard@ined.fr>
 2005-09-30    <lievre@PC_00595>  
           * imach.c: Summary: Probably last 0.98 stable version 0.98r6
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.  
         (Module): If the status is missing at the last wave but we know  2016-02-16  Brouard Nicolas  <brouard@ined.fr>
         that the person is alive, then we can code his/her status as -2  
         (instead of missing=-1 in earlier versions) and his/her          * imach.c: Summary: minor bug
         contributions to the likelihood is 1 - Prob of dying from last  
         health status (= 1-p13= p11+p12 in the easiest case of somebody in          * imach.c: Summary: 0.99r2
         the healthy state at last known wave). Version is 0.98  
   2016-02-15  Brouard Nicolas  <brouard@ined.fr>
 2004-05-20  Brouard Nicolas  <brouard@localhost>  
           * imach.c: *** empty log message ***
         * imach.c (Repository):  
         Agnes added a direct estimation of mortality (without the need of  2016-02-12  Brouard Nicolas  <brouard@ined.fr>
         computing period prevalence and differential mortality). Thus here  
         is version 0.97a which has been distributed to some people at          * imach.c: Summary: 0.99 Back projections
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of  
         mortality using covariates is not done today. Estimating direct  2015-12-23  Brouard Nicolas  <brouard@ined.fr>
         mortality is a very different process because it doesn't need  
         interpolation because it is easy to get the lx from the force of          * imach.c: Summary: Experimental backcast
         the mortality mux in the simplest case as for a Gompertz (log mux  
         = a + b*x . But we have been able to incorporate the new code  2015-12-18  Brouard Nicolas  <brouard@ined.fr>
         within former imach program (0.96d) without deteriorating too much  
         the understanding of the program.          * imach.c: Summary: 0.98r4 Warning and status=-2
   
 2003-06-25    <brouard@BROUARD>          Version 0.98r4 is now:
            - displaying an error when status is -1, date of interview unknown and date of death known;
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't           - permitting a status -2 when the vital status is unknown at a known date of right truncation.
         exist so I changed back to asctime which exists.          Older changes concerning s=-2, dating from 2005 have been supersed.
         (Module): Version 0.96b  
           * Makefile: *** empty log message ***
 2003-06-24    <brouard@BROUARD>  
   2015-12-16  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Some bugs corrected for windows. Also, when  
         mle=-1 a template is output in file "or"mypar.txt with the design          * Makefile: *** empty log message ***
         of the covariance matrix to be input.  
           * imach.c: Summary: 0.98r4 working
 2003-06-25  Brouard Nicolas  <brouard@homebrou>  
           * Makefile: Summary: linuxrpm added
         * imach.c (Repository): Duplicated warning errors corrected.  
         (Repository): Elapsed time after each iteration is now output. It          * Makefile: *** empty log message ***
         helps to forecast when convergence will be reached. Elapsed time  
         is stamped in powell.  We created a new html file for the graphs          * imach.c: Summary: temporary not working
         concerning matrix of covariance. It has extension -cov.htm.  
   2015-12-11  Brouard Nicolas  <brouard@ined.fr>
 2003-06-23  Brouard Nicolas  <brouard@homebrou>  
           * imach.c: Summary: 0.98r4
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.  
   2015-12-08  Brouard Nicolas  <brouard@ined.fr>
 2003-06-18  Brouard Nicolas  <brouard@homebrou>  
           * Makefile: *** empty log message ***
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96  
   2015-11-21  Brouard Nicolas  <brouard@ined.fr>
 2003-06-17  Brouard Nicolas  <brouard@homebrou>  
           * Makefile:
           Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
         * imach.c (Repository): Check when date of death was earlier that  
         current date of interview. It may happen when the death was just          * imach.c: Summary: minor typo
         prior to the death. In this case, dh was negative and likelihood  
         was wrong (infinity). We still send an "Error" but patch by          * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
         assuming that the date of death was just one stepm after the  
         interview.          Author: Nicolas Brouard
         (Repository): Because some people have very long ID (first column)  
         we changed int to long in num[] and we added a new lvector for  2015-11-18  Brouard Nicolas  <brouard@ined.fr>
         memory allocation. But we also truncated to 8 characters (left  
         truncation)          * imach.c: Summary: Start working on projected prevalences
   
         (Repository): No more line truncation errors.  2015-11-17  Brouard Nicolas  <brouard@ined.fr>
   
 2003-06-14  Brouard Nicolas  <brouard@homebrou>          * imach.c: Summary: Adding ftolpl parameter
           Author: N Brouard
         * imach.c (Repository): Add of a routine likelione (likelihood  
         only once) which prints on a text file          We had difficulties to get smoothed confidence intervals. It was due
         (ilk) the contributions to the likelihood for each          to the period prevalence which wasn't computed accurately. The inner
         individual/wave.          parameter ftolpl is now an outer parameter of the .imach parameter
           file after estepm. If ftolpl is small 1.e-4 and estepm too,
 2003-06-13  Brouard Nicolas  <brouard@homebrou>          computation are long.
         * imach.c (Repository): Replace "freqsummary" at a correct  
         place. It differs from routine "prevalence" which may be called          * version.h: *** empty log message ***
         many times. Probs is memory consuming and must be used with  
         parcimony.          * imach.c: Summary: temporary
   
 2003-06-17    <brouard@BROUARD>  2015-10-27  Brouard Nicolas  <brouard@ined.fr>
   
         * timeval.h (Module): Added included file to make use of          * Makefile: *** empty log message ***
         gettimeofday working on win32 with cygwin.  
           * setup.iss.in: Summary: some new subdirs
 2003-05-16  Brouard Nicolas  <brouard@brouard>  
         * imach.c (Module): Insert of a warning if the delay between two          * imach.c: *** empty log message ***
         waves is negative.  
           * setup.iss.in:
         * imach.c (Module):          Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
   
 2003-05-03    <brouard@BROUARD>  2015-10-24  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Some cleaning          * imach.c: *** empty log message ***
   
 2003-03-28    <brouard@BROUARD>  2015-10-23  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): In version up to 0.92 likelihood was computed  
         as if date of death was unknown. Death was treated as any other          * imach.c:
         health state: the date of the interview describes the actual state          Summary: 0.98r3 some clarification for graphs on likelihood contributions
         and not the date of a change in health state. The former idea was  
         to consider that at each interview the state was recorded  2015-10-01  Brouard Nicolas  <brouard@ined.fr>
         (healthy, disable or death) and IMaCh was corrected; but when we  
         introduced the exact date of death then we should have modified          * imach.c: Summary: Some new graphs of contribution to likelihood
         the contribution of an exact death to the likelihood. This new  
         contribution is smaller and very dependent of the step unit  2015-09-30  Brouard Nicolas  <brouard@ined.fr>
         stepm. It is no more the probability to die between last interview  
         and month of death but the probability to survive from last          * Makefile:
         interview up to one month before death multiplied by the          Summary: Version read from version.h, itself read with cmake
         probability to die within a month. Thanks to Chris  
         Jackson for correcting this bug.  Former versions increased          * imach.c: Summary: looking at better estimation of the hessian
         mortality artificially. The bad side is that we add another loop  
           Also a better criteria for convergence to the period prevalence And
           therefore adding the number of years needed to converge. (The
         which slows down the processing. The difference can be up to 10%          prevalence in any alive state shold sum to one
   
           * Makefile: *** empty log message ***
         lower mortality.  
   2015-09-22  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: Adding some overall graph on contribution to likelihood. Might change
   
 2002-05-30    <brouard@BROUARD>  2015-09-15  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: *** empty log message ***
   
           * imach.c: Summary: 0.98r0
   
         *          - Some new graphs like survival functions
           - Some bugs fixed like model=1+age+V2.
   
           * ChangeLog, Makefile: Summary: 0.98r0
   
           * CMakeLists.txt: Summary: Some tests for setup.iss
         * imach.c (Module): Add correlation matrix of one-step  
   2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
         probabilities and covariance matrix          *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
   
   2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
   
           *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
   
   2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
           *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
   
   2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
   
           * imach.c (Module): Merging 1.61 to 1.162
   
   2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
   
           * prevlim.h (Module): 
   
   2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
   
           * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
           (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
   
   2010-04-29  brouard  <brouard@ined.fr>
   
           * imach.c (Module): Checking covariates for more complex models
           than V1+V2. A lot of change to be done. Unstable.
   
   2010-04-26  brouard  <brouard@ined.fr>
   
           * imach.c (Module): merging some libgsl code. Fixing computation
           of likelione (using inter/intrapolation if mle = 0) in order to
           get same likelihood as if mle=1.
           Some cleaning of code and comments added.
   
   2009-10-29  brouard  <brouard@ined.fr>
   
           * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
   
   2006-06-30  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Clarifications on computing e.j
   
   2006-04-28  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Yes the sum of survivors was wrong since
           imach-114 because nhstepm was no more computed in the age
           loop. Now we define nhstepma in the age loop.
           (Module): In order to speed up (in case of numerous covariates) we
           compute health expectancies (without variances) in a first step
           and then all the health expectancies with variances or standard
           deviation (needs data from the Hessian matrices) which slows the
           computation.
           In the future we should be able to stop the program is only health
           expectancies and graph are needed without standard deviations.
   
   2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.iss (Module): 
   
           * imach.c (Module): bugs in evsi + population file added in htm output file
   
   2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): 
   
   2006-03-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): <title> changed, corresponds to .htm file
           name. <head> headers where missing.
   
           * Makefile (Module): 0.98g
   
           * imach.c (Module): Weights can have a decimal point as for
           English (a comma might work with a correct LC_NUMERIC environment,
           otherwise the weight is truncated).
           Modification of warning when the covariates values are not 0 or
           1. 
           Version 0.98g
   
   2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): Comments concerning covariates added
   
           * noreg-setup.iss (Module): Version 0.98f
   
           * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
   
           * imach.c (Module): refinements in the computation of lli if
           status=-2 in order to have more reliable computation if stepm is
           not 1 month. Version 0.98f
   
   2006-03-15  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Bug if status = -2, the loglikelihood was
           computed as likelihood omitting the logarithm. Version O.98e
   
   2006-03-14  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): varevsij Comments added explaining the second
           table of variances if popbased=1 .
           (Module): Covariances of eij, ekl added, graphs fixed, new html link.
           (Module): Function pstamp added
           (Module): Version 0.98d 
   
   2006-03-06  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Variance-covariance wrong links and
           varian-covariance of ej. is needed (Saito).
   
   2006-02-27  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): One freematrix added in mlikeli!
   
   2006-02-26  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Some improvements in processing parameter
           filename with strsep.
   
   2006-02-24  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Memory leaks checks with valgrind and:
           datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
   
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * strsep.c (Module): Inclusion because not in mingw32!!!
   
           * setup.iss.in (Module): IMACHSETUPVERSION added
   
           * noreg-setup.iss (Module): added to cvs tree
   
           * Makefile (Module): IMACHSETUPVERSION added
   
   2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
           * Makefile (Module, Module): Latest Makefile
   
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
           * noreg-setup.iss (Module): ADDED
   
   2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
           * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
   2005-09-30    <lievre@PC_00595>
   
           * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
           that the person is alive, then we can code his/her status as -2
           (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
           health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98 
   
   2004-05-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Repository): 
           Agnes added a direct estimation of mortality (without the need of
           computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
           REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
           mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
           the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
           within former imach program (0.96d) without deteriorating too much
           the understanding of the program. 
   
   2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module): 
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
           which slows down the processing. The difference can be up to 10%
           lower mortality.
   
   2002-05-30    <brouard@BROUARD>
   
           * imach.c (Module): Add correlation matrix of one-step
           probabilities and covariance matrix
   
Removed from v.1.38  
changed lines
  Added in v.1.68

FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>