[BACK]Return to ChangeLog CVS log [TXT] [DIR] Up to [Local Repository] / imach / src

Diff for /imach/src/ChangeLog between versions 1.52 and 1.68

version 1.52, 2022/05/30 08:28:04 version 1.68, 2024/04/24 20:53:06
Line 1 Line 1
 2022-05-30  Brouard Nicolas  <brouard@brouard.name>  2024-04-24  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: With products of covariates (age or dummies or          * (Module): This version comes late after having tested
         quantitatives), estimates of parameters were good but when          successfully the praxis C version of Buckhardt.  But Buckardt's
         estimating variances the positions of newly created covariates          version was difficult to read and Gegenfurtner's version had a few
         were wrongly assigned and results were wrong. Thank to Feinua_Sun!          typos which made its results less reliable than Buckhardt's
           results.  The most important work consisted in retyping the Brent
 2022-05-24  Nicolas Brouard   <brouard@ined.fr>          original PRAXIS program written in Algol W (published with errors,
           ommitting the transposition of matrix V before its QR reduction
         * imach.c (Module): Some attempts to find a bug of wrong estimates          from Golub. I used the recent "awe" compiler from Gkynn Webster.
         of confidencce intervals with product in the equation modelC          The awe library had errors, for example in arc tangent function
           which have been fixed.
 2022-05-15  Nicolas Brouard   <brouard@ined.fr>  
           The main objective was to get identical results with the three
         * imach.c (Module):  Some minor improvements          versions: (1) Algol W, (2) Buckhardt'C version as well (3)
           Gegenfürtner C versions on the various test functions published by
 2022-04-13  Brouard Nicolas  <brouard@brouard.name>          Brent in 1973 in Algol W.
   
         * imach.c (Module): Adding link to text data files          Also, in order to compare them, the random function had to produce
           the same sequence for the 3 softwares. The random function used in
 2022-04-11  Nicolas Brouard   <brouard@ined.fr>          imach corresponds to original Brent's random function written in
           Algol W.  Other point, in Algol W, the arrays of dimension n are
         * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed          'normal' mathematical arrays starting from 1 to n. But this is a
           real issue in C where, by default, arrays are starting from 0 to
 2022-04-05  Brouard Nicolas  <brouard@ined.fr>          n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
           seen that authors while trying to mimick original Brent Algol W
         * imach.c (Module): Fixed covariates (dummy or quantitative)          code are hesitating by changing either a loop originally from 1 to
         with missing values have never been allowed but are ERRORS and          n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
         program quits. Standard deviations of fixed covariates were          shifting the index from original X(I) in Algol W to x[i-1] in C.
         wrongly computed. Mean and standard deviations of time varying          But as IMaCh is using, since the beginning, the Numerical Recipes
         covariates are still not computed.          functions vector or matrix, I changed Geggenfürtner code to mimick
           the original Algol W arrays. Thus the X(I) is translated in C as
 2022-03-17  Brouard Nicolas  <brouard@ined.fr>          x[i] which minimizes the errors. The Golub QR algorithm was
           published in Algol with overflow errors which were reproduced in
         * 99r25 Improvements in fixing discrepancies between covariates          Brent's Algol W code. Buckhardt code fixed these errors which are
         missing in result line but in model.          much more problematic in C than in Algol W.  Thus Buckhardt code
           seems very safe, but i haven't chosen it for IMaCh because the C
 *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>          style is horrible and almost unreadable compared to Gegenfürtner
         * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett          CO code which is very close to Brent's original. Also what makes
           Buckhardt code more difficult to read is, instead of passing the
 *2021-03-08  Nicolas Brouard   <brouard@ined.fr>          minimum of parameters in the functions calls, as it is in Algol
           Brent's code or Gegenfürtner's code, the list of parameters is
         * ./ (Module): Fixed bug on result:          high. For example, the flin function LONG REAL PROCEDURE FLIN
           (LONG REAL VALUE L) has only one parameter in Algol W, the
 *2021-02-20  Nicolas Brouard   <brouard@ined.fr>          Gegenfürtner flin function had two parameters: static double
           flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
         * imach.c (Module): Fix bug on quitting after result lines!          function has 14 parameters which makes the code unreadable and
         (Module): Version 0.99r21          useless. Gegenfürtner used a lot of static variables or functions
           which I tried to minimize. Also in Gegefürtner, array dimensions
 2021-02-12  Nicolas Brouard   <brouard@ined.fr>          were fixed to N. In my adaptation the flin is static double
           flin(double l, int j) and the parameter used are global variables.
         * imach.c (Module): The use of a Windows BOM (huge) file is now an error  
   2023-06-14  Nicolas Brouard   <brouard@ined.fr>
   
 2021-02-11  Nicolas  Brouard   <brouard@ined.fr>          * imach.c (Module): Testing if conjugate gradient could be quicker
           when lot of variables POWELLORIGINCONJUGATE
         *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.  
   2023-05-23  Nicolas Brouard   <brouard@ined.fr>
 2020-02-22  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Fixed PROB_r 
         *  (Module): imach.c Update mle=-3 (for computing Life expectancy  
         and life table from the data without any state)  2023-05-22  Nicolas Brouard   <brouard@ined.fr>
   
 2019-05-20  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): In the ILK....txt file, the number of columns
           before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
         * version.h: Summary: version 0.99.r19  
   2023-05-08  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Projection syntax simplified  
         We can now start projections, forward or backward, from the mean date          *  (Module): Error V0 when result:. and model 1+age+V1: fixed
         of inteviews up to or down to a number of years of projection:  
         prevforecast=1 yearsfproj=15.3 mobil_average=0  2023-04-29  Nicolas Brouard  <brouard@ined.fr>
         or  
         prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0          * imach.c (Module): Inverting the model equation and fixingg bugs
         or          in the drawings
         prevbackcast=1 yearsbproj=12.3 mobil_average=1          "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
         or  
         prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1  2023-04-24  Nicolas Brouard  <brouard@ined.fr>
   
 2019-05-18  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): some bugs in printinggnuplot 
   
         * imach.c: Summary: doxygen tex bug  2022-09-19  Nicolas Brouard   <brouard@ined.fr>
   
 2019-05-16  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Version 0.99r42 needed a newer version of
           Gnuplot. But newer version 0.99r43 should run with the Gnuplot
         * imach.c: Summary: There was some wrong lines added          version 5.0 or 5.1 distributed with IMaCh.
   
 2019-05-09  Brouard Nicolas  <brouard@ined.fr>  2022-09-18  Nicolas Brouard   <brouard@ined.fr>
   
         * Makefile, imach.c: *** empty log message ***          * imach.c (Module): Fixing when a state in the data is 0 or higher
           than lstate+ndeath. Fixing the plot of contribution to Likelihood.
         * ChangeLog: Summary: C=  
   2022-09-16  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Some updates  
           * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you  Feinuo
         * imach.c: Summary: Before ncovmax  
   2022-09-14  Nicolas Brouard   <brouard@ined.fr>
         * version.h: *** empty log message ***  
           * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
         * imach.c: Summary: 0.99r18 unlimited number of individuals  
         The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.  2022-09-14  Nicolas Brouard   <brouard@ined.fr>
   
 2018-12-13  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Version 0.99r39 with colored dummy covariates
           (fixed or time varying), using new last columns of
         * imach.c: Summary: Bug for young ages (<-30) will be in r17          ILK_parameter.txt file.
   
 2018-12-05  Brouard Nicolas  <brouard@ined.fr>  2022-09-11  Nicolas Brouard   <brouard@ined.fr>
   
         * Makefile: Summary: 0.99r16          * imach.c (Module): Adding timevarying products of any kinds,
           should work before shifting cotvar from ncovcol+nqv columns in
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>          order to have a correspondance between the column of cotvar and
           the id of column.
         * imach.c: Summary: Some bugs fixed          (Module): Some cleaning and adding covariates in ILK.txt
   
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  2022-09-09  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c:  Summary: Bug for young ages (<-30) will be in r17          * imach.c (Module): Many improvements for fixing products of fixed
           timevarying as well as fixed * fixed, and test with quantitative
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>          covariate.
   
         * imach.c: Summary: Some bugs fixed  2022-09-04  Nicolas Brouard   <brouard@ined.fr>
   
 2018-05-01  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Now the easy runs i.e. without result or
           model=1+age only did not work. The defautl combination should be 1
         * imach.c:          and not 0 because everything hasn't been tranformed yet.
         Summary: Bug fixed by providing frequencies only for non missing covariates  
   2022-09-02  Nicolas Brouard   <brouard@ined.fr>
 2018-04-27  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Version 0.99r35 because it outputs same results with
         * imach.c: Summary: some minor bugs          1+age+V1+V1*age for females and 1+age for females only
           (education=1 noweight)
 2018-04-21  Brouard Nicolas  <brouard@ined.fr>  
   2022-08-31  Nicolas Brouard   <brouard@ined.fr>
         * README.txt: *** empty log message ***  
           * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
         * imach.c: Summary: Some bugs fixed, valgrind tested  
   2022-08-21  Nicolas Brouard   <brouard@ined.fr>
 2018-04-20  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Version 0.99r33 A lot of changes in
         * Makefile, README.txt, setup.iss: Summary: imach 0.99r16          reassigning covariates: my first idea was that people will always
           use the first covariate V1 into the model but in fact they are
         * imach.c:          producing data with many covariates and can use an equation model
         Summary: Computing mean and stdeviation of fixed quantitative variables          with some of the covariate; it means that in a model V2+V3 instead
           of codtabm(k,Tvaraff[j]) which calculates for combination k, for
 2018-04-19  Brouard Nicolas  <brouard@ined.fr>          three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
           the equation model is restricted to two variables only (V2, V3)
         * imach.c: Summary: Some minor bugs fixed          and the combination for V2 should be codtabm(k,1) instead of
           (codtabm(k,2), and the code should be
         * version.h: *** empty log message ***          codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
           made. All of these should be simplified once a day like we did in
 2018-02-27  Brouard Nicolas  <brouard@ined.fr>          hpxij() for example by using precov[nres] which is computed in
           decoderesult for each nres of each resultline. Loop should be done
         * imach.c: *** empty log message ***          on the equation model globally by distinguishing only product with
           age (which are changing with age) and no more on type of
         * imach.c: Summary: Adding second argument for quitting          covariates, single dummies, single covariates. 
   
 2018-02-21  Brouard Nicolas  <brouard@ined.fr>  2022-08-06  Nicolas Brouard   <brouard@ined.fr>
   
         * Makefile, README.txt, imach.c: Summary: 0.99r15          *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
         New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c  
   2022-08-03  Nicolas Brouard   <brouard@ined.fr>
 2017-07-20  Brouard Nicolas  <brouard@ined.fr>  
           *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
         * imach.c: Summary: temporary working  
   2022-07-25  Brouard Nicolas  <brouard@brouard.name>
 2017-07-19  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Error cptcovn instead of nsd in bmij (was
         * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)          coredumped, revealed by Feiuno, thank you.
   
 2017-07-17  Brouard Nicolas  <brouard@ined.fr>  2022-07-23  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: BOM files can be read now          * r29 W and not sqrt(Wald)
   
 2017-06-30  Brouard Nicolas  <brouard@ined.fr>  2022-07-22  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Graphs improvements          *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
   
         * imach.c: Summary: Saito's color  2022-06-02  Brouard Nicolas  <brouard@brouard.name>
   
 2017-06-29  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Adding the Wald tests from the log to the main
           htm for better display of the maximum likelihood estimators.
         * imach.c: Summary: Version 0.99r14  
   2022-05-30  Brouard Nicolas  <brouard@brouard.name>
 2017-06-27  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: With products of covariates (age or dummies or
         * imach.c: Summary: More documentation on projections          quantitatives), estimates of parameters were good but when
           estimating variances the positions of newly created covariates
         * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)          were wrongly assigned and results were wrong. Thank to Feinua_Sun!
   
         * imach.c: Summary: Some bug with rint  2022-05-24  Nicolas Brouard   <brouard@ined.fr>
   
 2017-05-24  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Some attempts to find a bug of wrong estimates
           of confidencce intervals with product in the equation modelC
         * imach.c: *** empty log message ***  
   2022-05-15  Nicolas Brouard   <brouard@ined.fr>
 2017-05-23  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module):  Some minor improvements
         * imach.c: Summary: Code into subroutine, cleanings  
   2022-04-13  Brouard Nicolas  <brouard@brouard.name>
 2017-05-18  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Adding link to text data files
         * imach.c:  
         Summary: backprojection and confidence intervals of backprevalence  2022-04-11  Nicolas Brouard   <brouard@ined.fr>
   
 2017-05-13  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
   
         * imach.c: Summary: temporary save for backprojection  2022-04-05  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)          * imach.c (Module): Fixed covariates (dummy or quantitative)
           with missing values have never been allowed but are ERRORS and
 2017-04-26  Brouard Nicolas  <brouard@ined.fr>          program quits. Standard deviations of fixed covariates were
           wrongly computed. Mean and standard deviations of time varying
         * imach.c: Summary: imach 0.99r13 Some bugs fixed          covariates are still not computed.
   
         * imach.c: Summary: Labels in graphs  2022-03-17  Brouard Nicolas  <brouard@ined.fr>
   
 2017-04-24  Brouard Nicolas  <brouard@ined.fr>          * 99r25 Improvements in fixing discrepancies between covariates
           missing in result line but in model. 
         * imach.c: Summary: to save  
   *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
 2017-04-18  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
   
         * imach.c: *** empty log message ***  *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
   
 2017-04-05  Brouard Nicolas  <brouard@ined.fr>          * ./ (Module): Fixed bug on result:
   
         * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1  *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
   
 2017-04-04  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Fix bug on quitting after result lines!
           (Module): Version 0.99r21
         * imach.c: Summary: Gnuplot indexations fixed (humm)  
   2021-02-12  Nicolas Brouard   <brouard@ined.fr>
         * imach.c:  
         Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3          * imach.c (Module): The use of a Windows BOM (huge) file is now an error
   
 2017-04-03  Brouard Nicolas  <brouard@ined.fr>  
   2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
         * imach.c: Summary: Version 0.99r12  
         Some cleanings, conformed with updated documentation.          *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
   
 2017-03-30  Brouard Nicolas  <brouard@ined.fr>  2020-02-22  Brouard Nicolas  <brouard@ined.fr>
   
         * version.h: *** empty log message ***          *  (Module): imach.c Update mle=-3 (for computing Life expectancy
           and life table from the data without any state)
         * version.h: Summary:0.99r11  
   2019-05-20  Brouard Nicolas  <brouard@ined.fr>
 2017-03-29  Brouard Nicolas  <brouard@ined.fr>  
           * version.h: Summary: version 0.99.r19
         * imach.c: Summary: Temp  
           * imach.c: Summary: Projection syntax simplified
 2017-03-27  Brouard Nicolas  <brouard@ined.fr>          We can now start projections, forward or backward, from the mean date
           of inteviews up to or down to a number of years of projection:
         * imach.c: Summary: Temporary          prevforecast=1 yearsfproj=15.3 mobil_average=0
           or
 2017-03-08  Brouard Nicolas  <brouard@ined.fr>          prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
           or
         * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed          prevbackcast=1 yearsbproj=12.3 mobil_average=1
           or
         * imach.c: Summary: Fixing data parameter line          prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
   
 2016-12-15  Brouard Nicolas  <brouard@ined.fr>  2019-05-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.99 in progress          * imach.c: Summary: doxygen tex bug
   
 2016-09-15  Brouard Nicolas  <brouard@ined.fr>  2019-05-16  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: Summary: There was some wrong lines added
   
         * imach.c: Summary: not working  2019-05-09  Brouard Nicolas  <brouard@ined.fr>
   
 2016-09-08  Brouard Nicolas  <brouard@ined.fr>          * Makefile, imach.c: *** empty log message ***
   
         * imach.c: Summary: continue          * ChangeLog: Summary: C=
   
 2016-09-07  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Some updates
   
         * imach.c: Summary: Starting values from frequencies          * imach.c: Summary: Before ncovmax
   
         * imach.c: *** empty log message ***          * version.h: *** empty log message ***
   
 2016-09-02  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: 0.99r18 unlimited number of individuals
           The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
         * imach.c: *** empty log message ***  
   2018-12-13  Brouard Nicolas  <brouard@ined.fr>
 2016-08-30  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Bug for young ages (<-30) will be in r17
         * imach.c: Summary: Fixing a lots  
   2018-12-05  Brouard Nicolas  <brouard@ined.fr>
 2016-08-29  Brouard Nicolas  <brouard@ined.fr>  
           * Makefile: Summary: 0.99r16
         * imach.c: Summary: gnuplot problem in Back projection to fix  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Better  
           * imach.c: Summary: Some bugs fixed
 2016-08-26  Brouard Nicolas  <brouard@ined.fr>  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * imach.c:  
         Summary: Improvement in Powell output in order to copy and paste          * imach.c:  Summary: Bug for young ages (<-30) will be in r17
   
         * imach.c: Summary: Starting tests of 0.99  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: to valgrind          * imach.c: Summary: Some bugs fixed
   
 2016-08-25  Brouard Nicolas  <brouard@ined.fr>  2018-05-01  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c:
           Summary: Bug fixed by providing frequencies only for non missing covariates
 2016-08-23  Brouard Nicolas  <brouard@ined.fr>  
   2018-04-27  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * imach.c: Summary: some minor bugs
         * imach.c: Summary: not working  
   2018-04-21  Brouard Nicolas  <brouard@ined.fr>
 2016-08-22  Brouard Nicolas  <brouard@ined.fr>  
           * README.txt: *** empty log message ***
         * imach.c: Summary: not working  
           * imach.c: Summary: Some bugs fixed, valgrind tested
         * imach.c: Summary: Not working  
   2018-04-20  Brouard Nicolas  <brouard@ined.fr>
 2016-07-23  Brouard Nicolas  <brouard@ined.fr>  
           * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
         * imach.c: Summary: Completing for func too  
           * imach.c:
 2016-07-22  Brouard Nicolas  <brouard@ined.fr>          Summary: Computing mean and stdeviation of fixed quantitative variables
   
         * imach.c: Summary: Fixing some arrays, still debugging  2018-04-19  Brouard Nicolas  <brouard@ined.fr>
   
 2016-07-21  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Some minor bugs fixed
   
         * imach.c:          * version.h: *** empty log message ***
         Summary: 0.99 working (more or less) for Asian Workshop on multitate methods  
   2018-02-27  Brouard Nicolas  <brouard@ined.fr>
 2016-07-12  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: *** empty log message ***
         * imach.c: Summary: temp  
           * imach.c: Summary: Adding second argument for quitting
         * imach.c: Summary: saving but not running  
   2018-02-21  Brouard Nicolas  <brouard@ined.fr>
 2016-07-01  Brouard Nicolas  <brouard@ined.fr>  
           * Makefile, README.txt, imach.c: Summary: 0.99r15
         * imach.c: Summary: Fixes          New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
   
 2016-02-19  Brouard Nicolas  <brouard@ined.fr>  2017-07-20  Brouard Nicolas  <brouard@ined.fr>
   
         * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7          * imach.c: Summary: temporary working
   
         * setup.iss, Makefile, version.h: *** empty log message ***  2017-07-19  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: temporary          * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
   
 2016-02-17  Brouard Nicolas  <brouard@ined.fr>  2017-07-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Probably last 0.98 stable version 0.98r6          * imach.c: Summary: BOM files can be read now
   
 2016-02-16  Brouard Nicolas  <brouard@ined.fr>  2017-06-30  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: minor bug          * imach.c: Summary: Graphs improvements
   
         * imach.c: Summary: 0.99r2          * imach.c: Summary: Saito's color
   
 2016-02-15  Brouard Nicolas  <brouard@ined.fr>  2017-06-29  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: Summary: Version 0.99r14
   
 2016-02-12  Brouard Nicolas  <brouard@ined.fr>  2017-06-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.99 Back projections          * imach.c: Summary: More documentation on projections
   
 2015-12-23  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
   
         * imach.c: Summary: Experimental backcast          * imach.c: Summary: Some bug with rint
   
 2015-12-18  Brouard Nicolas  <brouard@ined.fr>  2017-05-24  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r4 Warning and status=-2          * imach.c: *** empty log message ***
   
         Version 0.98r4 is now:  2017-05-23  Brouard Nicolas  <brouard@ined.fr>
          - displaying an error when status is -1, date of interview unknown and date of death known;  
          - permitting a status -2 when the vital status is unknown at a known date of right truncation.          * imach.c: Summary: Code into subroutine, cleanings
         Older changes concerning s=-2, dating from 2005 have been supersed.  
   2017-05-18  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * imach.c:
 2015-12-16  Brouard Nicolas  <brouard@ined.fr>          Summary: backprojection and confidence intervals of backprevalence
   
         * Makefile: *** empty log message ***  2017-05-13  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r4 working          * imach.c: Summary: temporary save for backprojection
   
         * Makefile: Summary: linuxrpm added          * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
   
         * Makefile: *** empty log message ***  2017-04-26  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: temporary not working          * imach.c: Summary: imach 0.99r13 Some bugs fixed
   
 2015-12-11  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Labels in graphs
   
         * imach.c: Summary: 0.98r4  2017-04-24  Brouard Nicolas  <brouard@ined.fr>
   
 2015-12-08  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: to save
   
         * Makefile: *** empty log message ***  2017-04-18  Brouard Nicolas  <brouard@ined.fr>
   
 2015-11-21  Brouard Nicolas  <brouard@ined.fr>          * imach.c: *** empty log message ***
   
         * Makefile:  2017-04-05  Brouard Nicolas  <brouard@ined.fr>
         Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more  
           * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
         * imach.c: Summary: minor typo  
   2017-04-04  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional  
           * imach.c: Summary: Gnuplot indexations fixed (humm)
         Author: Nicolas Brouard  
           * imach.c:
 2015-11-18  Brouard Nicolas  <brouard@ined.fr>          Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
   
         * imach.c: Summary: Start working on projected prevalences  2017-04-03  Brouard Nicolas  <brouard@ined.fr>
   
 2015-11-17  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Version 0.99r12
           Some cleanings, conformed with updated documentation.
         * imach.c: Summary: Adding ftolpl parameter  
         Author: N Brouard  2017-03-30  Brouard Nicolas  <brouard@ined.fr>
   
         We had difficulties to get smoothed confidence intervals. It was due          * version.h: *** empty log message ***
         to the period prevalence which wasn't computed accurately. The inner  
         parameter ftolpl is now an outer parameter of the .imach parameter          * version.h: Summary:0.99r11
         file after estepm. If ftolpl is small 1.e-4 and estepm too,  
         computation are long.  2017-03-29  Brouard Nicolas  <brouard@ined.fr>
   
         * version.h: *** empty log message ***          * imach.c: Summary: Temp
   
         * imach.c: Summary: temporary  2017-03-27  Brouard Nicolas  <brouard@ined.fr>
   
 2015-10-27  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Temporary
   
         * Makefile: *** empty log message ***  2017-03-08  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss.in: Summary: some new subdirs          * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
   
         * imach.c: *** empty log message ***          * imach.c: Summary: Fixing data parameter line
   
         * setup.iss.in:  2016-12-15  Brouard Nicolas  <brouard@ined.fr>
         Summary: Adding gnuplot 5.1 with bin and etc for pango fonts  
           * imach.c: Summary: 0.99 in progress
 2015-10-24  Brouard Nicolas  <brouard@ined.fr>  
   2016-09-15  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * imach.c: *** empty log message ***
 2015-10-23  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: not working
         * imach.c:  
         Summary: 0.98r3 some clarification for graphs on likelihood contributions  2016-09-08  Brouard Nicolas  <brouard@ined.fr>
   
 2015-10-01  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: continue
   
         * imach.c: Summary: Some new graphs of contribution to likelihood  2016-09-07  Brouard Nicolas  <brouard@ined.fr>
   
 2015-09-30  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Starting values from frequencies
   
         * Makefile:          * imach.c: *** empty log message ***
         Summary: Version read from version.h, itself read with cmake  
   2016-09-02  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: looking at better estimation of the hessian  
           * imach.c: *** empty log message ***
         Also a better criteria for convergence to the period prevalence And  
         therefore adding the number of years needed to converge. (The  2016-08-30  Brouard Nicolas  <brouard@ined.fr>
         prevalence in any alive state shold sum to one  
           * imach.c: Summary: Fixing a lots
         * Makefile: *** empty log message ***  
   2016-08-29  Brouard Nicolas  <brouard@ined.fr>
 2015-09-22  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: gnuplot problem in Back projection to fix
         * imach.c:  
         Summary: Adding some overall graph on contribution to likelihood. Might change          * imach.c: Summary: Better
   
 2015-09-15  Brouard Nicolas  <brouard@ined.fr>  2016-08-26  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: *** empty log message ***          * imach.c:
           Summary: Improvement in Powell output in order to copy and paste
         * imach.c: Summary: 0.98r0  
           * imach.c: Summary: Starting tests of 0.99
         - Some new graphs like survival functions  
         - Some bugs fixed like model=1+age+V2.          * imach.c: Summary: to valgrind
   
         * ChangeLog, Makefile: Summary: 0.98r0  2016-08-25  Brouard Nicolas  <brouard@ined.fr>
   
         * CMakeLists.txt: Summary: Some tests for setup.iss          * imach.c: *** empty log message ***
   
 2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  2016-08-23  Brouard Nicolas  <brouard@ined.fr>
   
         *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc          * imach.c: *** empty log message ***
   
 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>          * imach.c: Summary: not working
   
         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.  2016-08-22  Brouard Nicolas  <brouard@ined.fr>
   
 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>          * imach.c: Summary: not working
   
         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)          * imach.c: Summary: Not working
   
 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>  2016-07-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Merging 1.61 to 1.162          * imach.c: Summary: Completing for func too
   
 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>  2016-07-22  Brouard Nicolas  <brouard@ined.fr>
   
         * prevlim.h (Module):          * imach.c: Summary: Fixing some arrays, still debugging
   
 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>  2016-07-21  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...          * imach.c:
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.          Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
   
 2010-04-29  brouard  <brouard@ined.fr>  2016-07-12  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Checking covariates for more complex models          * imach.c: Summary: temp
         than V1+V2. A lot of change to be done. Unstable.  
           * imach.c: Summary: saving but not running
 2010-04-26  brouard  <brouard@ined.fr>  
   2016-07-01  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): merging some libgsl code. Fixing computation  
         of likelione (using inter/intrapolation if mle = 0) in order to          * imach.c: Summary: Fixes
         get same likelihood as if mle=1.  
         Some cleaning of code and comments added.  2016-02-19  Brouard Nicolas  <brouard@ined.fr>
   
 2009-10-29  brouard  <brouard@ined.fr>          * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
   
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.          * setup.iss, Makefile, version.h: *** empty log message ***
   
 2006-06-30  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: temporary
   
         * imach.c (Module): Clarifications on computing e.j  2016-02-17  Brouard Nicolas  <brouard@ined.fr>
   
 2006-04-28  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: Probably last 0.98 stable version 0.98r6
   
         * imach.c (Module): Yes the sum of survivors was wrong since  2016-02-16  Brouard Nicolas  <brouard@ined.fr>
         imach-114 because nhstepm was no more computed in the age  
         loop. Now we define nhstepma in the age loop.          * imach.c: Summary: minor bug
         (Module): In order to speed up (in case of numerous covariates) we  
         compute health expectancies (without variances) in a first step          * imach.c: Summary: 0.99r2
         and then all the health expectancies with variances or standard  
         deviation (needs data from the Hessian matrices) which slows the  2016-02-15  Brouard Nicolas  <brouard@ined.fr>
         computation.  
         In the future we should be able to stop the program is only health          * imach.c: *** empty log message ***
         expectancies and graph are needed without standard deviations.  
   2016-02-12  Brouard Nicolas  <brouard@ined.fr>
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * imach.c: Summary: 0.99 Back projections
         * imach.iss (Module):  
   2015-12-23  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): bugs in evsi + population file added in htm output file  
           * imach.c: Summary: Experimental backcast
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
   2015-12-18  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module):  
           * imach.c: Summary: 0.98r4 Warning and status=-2
 2006-03-20  Brouard Nicolas  <brouard@localhost>  
           Version 0.98r4 is now:
         * imach.c (Module): <title> changed, corresponds to .htm file           - displaying an error when status is -1, date of interview unknown and date of death known;
         name. <head> headers where missing.           - permitting a status -2 when the vital status is unknown at a known date of right truncation.
           Older changes concerning s=-2, dating from 2005 have been supersed.
         * Makefile (Module): 0.98g  
           * Makefile: *** empty log message ***
         * imach.c (Module): Weights can have a decimal point as for  
         English (a comma might work with a correct LC_NUMERIC environment,  2015-12-16  Brouard Nicolas  <brouard@ined.fr>
         otherwise the weight is truncated).  
         Modification of warning when the covariates values are not 0 or          * Makefile: *** empty log message ***
         1.  
         Version 0.98g          * imach.c: Summary: 0.98r4 working
   
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * Makefile: Summary: linuxrpm added
   
         * imach.c (Module): Comments concerning covariates added          * Makefile: *** empty log message ***
   
         * noreg-setup.iss (Module): Version 0.98f          * imach.c: Summary: temporary not working
   
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup  2015-12-11  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): refinements in the computation of lli if          * imach.c: Summary: 0.98r4
         status=-2 in order to have more reliable computation if stepm is  
         not 1 month. Version 0.98f  2015-12-08  Brouard Nicolas  <brouard@ined.fr>
   
 2006-03-15  Brouard Nicolas  <brouard@localhost>          * Makefile: *** empty log message ***
   
         * imach.c (Module): Bug if status = -2, the loglikelihood was  2015-11-21  Brouard Nicolas  <brouard@ined.fr>
         computed as likelihood omitting the logarithm. Version O.98e  
           * Makefile:
 2006-03-14  Brouard Nicolas  <brouard@localhost>          Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
   
         * imach.c (Module): varevsij Comments added explaining the second          * imach.c: Summary: minor typo
         table of variances if popbased=1 .  
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.          * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
         (Module): Function pstamp added  
         (Module): Version 0.98d          Author: Nicolas Brouard
   
 2006-03-06  Brouard Nicolas  <brouard@localhost>  2015-11-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Variance-covariance wrong links and          * imach.c: Summary: Start working on projected prevalences
         varian-covariance of ej. is needed (Saito).  
   2015-11-17  Brouard Nicolas  <brouard@ined.fr>
 2006-02-27  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: Adding ftolpl parameter
         * imach.c (Module): One freematrix added in mlikeli!          Author: N Brouard
   
 2006-02-26  Brouard Nicolas  <brouard@localhost>          We had difficulties to get smoothed confidence intervals. It was due
           to the period prevalence which wasn't computed accurately. The inner
         * imach.c (Module): Some improvements in processing parameter          parameter ftolpl is now an outer parameter of the .imach parameter
         filename with strsep.          file after estepm. If ftolpl is small 1.e-4 and estepm too,
           computation are long.
 2006-02-24  Brouard Nicolas  <brouard@localhost>  
           * version.h: *** empty log message ***
         * imach.c (Module): Memory leaks checks with valgrind and:  
         datafile was not closed, some imatrix were not freed and on matrix          * imach.c: Summary: temporary
         allocation too.  
   2015-10-27  Brouard Nicolas  <brouard@ined.fr>
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * Makefile: *** empty log message ***
         * strsep.c (Module): Inclusion because not in mingw32!!!  
           * setup.iss.in: Summary: some new subdirs
         * setup.iss.in (Module): IMACHSETUPVERSION added  
           * imach.c: *** empty log message ***
         * noreg-setup.iss (Module): added to cvs tree  
           * setup.iss.in:
         * Makefile (Module): IMACHSETUPVERSION added          Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
   
 2006-01-30  BROUARD Nicolas  <brouard@localhost>  2015-10-24  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile (Module, Module): Latest Makefile          * imach.c: *** empty log message ***
   
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe  2015-10-23  Brouard Nicolas  <brouard@ined.fr>
   
 2006-01-27  BROUARD Nicolas  <brouard@localhost>          * imach.c:
           Summary: 0.98r3 some clarification for graphs on likelihood contributions
         * noreg-setup.iss (Module): ADDED  
   2015-10-01  Brouard Nicolas  <brouard@ined.fr>
 2006-01-24  BROUARD Nicolas  <brouard@localhost>  
           * imach.c: Summary: Some new graphs of contribution to likelihood
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.  
   2015-09-30  Brouard Nicolas  <brouard@ined.fr>
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>  
           * Makefile:
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg          Summary: Version read from version.h, itself read with cmake
   
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X          * imach.c: Summary: looking at better estimation of the hessian
   
 2005-09-30    <lievre@PC_00595>          Also a better criteria for convergence to the period prevalence And
           therefore adding the number of years needed to converge. (The
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.          prevalence in any alive state shold sum to one
         (Module): If the status is missing at the last wave but we know  
         that the person is alive, then we can code his/her status as -2          * Makefile: *** empty log message ***
         (instead of missing=-1 in earlier versions) and his/her  
         contributions to the likelihood is 1 - Prob of dying from last  2015-09-22  Brouard Nicolas  <brouard@ined.fr>
         health status (= 1-p13= p11+p12 in the easiest case of somebody in  
         the healthy state at last known wave). Version is 0.98          * imach.c:
           Summary: Adding some overall graph on contribution to likelihood. Might change
 2004-05-20  Brouard Nicolas  <brouard@localhost>  
   2015-09-15  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Repository):  
         Agnes added a direct estimation of mortality (without the need of          * Makefile: *** empty log message ***
         computing period prevalence and differential mortality). Thus here  
         is version 0.97a which has been distributed to some people at          * imach.c: Summary: 0.98r0
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of  
         mortality using covariates is not done today. Estimating direct          - Some new graphs like survival functions
         mortality is a very different process because it doesn't need          - Some bugs fixed like model=1+age+V2.
         interpolation because it is easy to get the lx from the force of  
         the mortality mux in the simplest case as for a Gompertz (log mux          * ChangeLog, Makefile: Summary: 0.98r0
         = a + b*x . But we have been able to incorporate the new code  
         within former imach program (0.96d) without deteriorating too much          * CMakeLists.txt: Summary: Some tests for setup.iss
         the understanding of the program.  
   2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
 2003-06-25    <brouard@BROUARD>  
           *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't  
         exist so I changed back to asctime which exists.  2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
         (Module): Version 0.96b  
           *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
 2003-06-24    <brouard@BROUARD>  
   2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         * imach.c (Module): Some bugs corrected for windows. Also, when  
         mle=-1 a template is output in file "or"mypar.txt with the design          *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
         of the covariance matrix to be input.  
   2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
 2003-06-25  Brouard Nicolas  <brouard@homebrou>  
           * imach.c (Module): Merging 1.61 to 1.162
         * imach.c (Repository): Duplicated warning errors corrected.  
         (Repository): Elapsed time after each iteration is now output. It  2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
         helps to forecast when convergence will be reached. Elapsed time  
         is stamped in powell.  We created a new html file for the graphs          * prevlim.h (Module): 
         concerning matrix of covariance. It has extension -cov.htm.  
   2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
 2003-06-23  Brouard Nicolas  <brouard@homebrou>  
           * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.          (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
   
 2003-06-18  Brouard Nicolas  <brouard@homebrou>  2010-04-29  brouard  <brouard@ined.fr>
   
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96          * imach.c (Module): Checking covariates for more complex models
           than V1+V2. A lot of change to be done. Unstable.
 2003-06-17  Brouard Nicolas  <brouard@homebrou>  
   2010-04-26  brouard  <brouard@ined.fr>
   
         * imach.c (Repository): Check when date of death was earlier that          * imach.c (Module): merging some libgsl code. Fixing computation
         current date of interview. It may happen when the death was just          of likelione (using inter/intrapolation if mle = 0) in order to
         prior to the death. In this case, dh was negative and likelihood          get same likelihood as if mle=1.
         was wrong (infinity). We still send an "Error" but patch by          Some cleaning of code and comments added.
         assuming that the date of death was just one stepm after the  
         interview.  2009-10-29  brouard  <brouard@ined.fr>
         (Repository): Because some people have very long ID (first column)  
         we changed int to long in num[] and we added a new lvector for          * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
         memory allocation. But we also truncated to 8 characters (left  
         truncation)  2006-06-30  Brouard Nicolas  <brouard@localhost>
   
         (Repository): No more line truncation errors.          * imach.c (Module): Clarifications on computing e.j
   
 2003-06-14  Brouard Nicolas  <brouard@homebrou>  2006-04-28  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Repository): Add of a routine likelione (likelihood          * imach.c (Module): Yes the sum of survivors was wrong since
         only once) which prints on a text file          imach-114 because nhstepm was no more computed in the age
         (ilk) the contributions to the likelihood for each          loop. Now we define nhstepma in the age loop.
         individual/wave.          (Module): In order to speed up (in case of numerous covariates) we
           compute health expectancies (without variances) in a first step
 2003-06-13  Brouard Nicolas  <brouard@homebrou>          and then all the health expectancies with variances or standard
         * imach.c (Repository): Replace "freqsummary" at a correct          deviation (needs data from the Hessian matrices) which slows the
         place. It differs from routine "prevalence" which may be called          computation.
         many times. Probs is memory consuming and must be used with          In the future we should be able to stop the program is only health
         parcimony.          expectancies and graph are needed without standard deviations.
   
 2003-06-17    <brouard@BROUARD>  2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
         * timeval.h (Module): Added included file to make use of          * imach.iss (Module): 
         gettimeofday working on win32 with cygwin.  
           * imach.c (Module): bugs in evsi + population file added in htm output file
 2003-05-16  Brouard Nicolas  <brouard@brouard>  
         * imach.c (Module): Insert of a warning if the delay between two  2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
         waves is negative.  
           * imach.c (Module): 
         * imach.c (Module):  
   2006-03-20  Brouard Nicolas  <brouard@localhost>
 2003-05-03    <brouard@BROUARD>  
           * imach.c (Module): <title> changed, corresponds to .htm file
         * imach.c: Some cleaning          name. <head> headers where missing.
   
 2003-03-28    <brouard@BROUARD>          * Makefile (Module): 0.98g
         * imach.c (Module): In version up to 0.92 likelihood was computed  
         as if date of death was unknown. Death was treated as any other          * imach.c (Module): Weights can have a decimal point as for
         health state: the date of the interview describes the actual state          English (a comma might work with a correct LC_NUMERIC environment,
         and not the date of a change in health state. The former idea was          otherwise the weight is truncated).
         to consider that at each interview the state was recorded          Modification of warning when the covariates values are not 0 or
         (healthy, disable or death) and IMaCh was corrected; but when we          1. 
         introduced the exact date of death then we should have modified          Version 0.98g
         the contribution of an exact death to the likelihood. This new  
         contribution is smaller and very dependent of the step unit  2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
         stepm. It is no more the probability to die between last interview  
         and month of death but the probability to survive from last          * imach.c (Module): Comments concerning covariates added
         interview up to one month before death multiplied by the  
         probability to die within a month. Thanks to Chris          * noreg-setup.iss (Module): Version 0.98f
         Jackson for correcting this bug.  Former versions increased  
         mortality artificially. The bad side is that we add another loop          * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
         which slows down the processing. The difference can be up to 10%  
         lower mortality.          * imach.c (Module): refinements in the computation of lli if
           status=-2 in order to have more reliable computation if stepm is
 2002-05-30    <brouard@BROUARD>          not 1 month. Version 0.98f
         *  
         * imach.c (Module): Add correlation matrix of one-step  2006-03-15  Brouard Nicolas  <brouard@localhost>
         probabilities and covariance matrix  
           * imach.c (Module): Bug if status = -2, the loglikelihood was
           computed as likelihood omitting the logarithm. Version O.98e
   
   2006-03-14  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): varevsij Comments added explaining the second
           table of variances if popbased=1 .
           (Module): Covariances of eij, ekl added, graphs fixed, new html link.
           (Module): Function pstamp added
           (Module): Version 0.98d 
   
   2006-03-06  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Variance-covariance wrong links and
           varian-covariance of ej. is needed (Saito).
   
   2006-02-27  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): One freematrix added in mlikeli!
   
   2006-02-26  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Some improvements in processing parameter
           filename with strsep.
   
   2006-02-24  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Memory leaks checks with valgrind and:
           datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
   
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * strsep.c (Module): Inclusion because not in mingw32!!!
   
           * setup.iss.in (Module): IMACHSETUPVERSION added
   
           * noreg-setup.iss (Module): added to cvs tree
   
           * Makefile (Module): IMACHSETUPVERSION added
   
   2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
           * Makefile (Module, Module): Latest Makefile
   
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
           * noreg-setup.iss (Module): ADDED
   
   2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
           * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
   2005-09-30    <lievre@PC_00595>
   
           * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
           that the person is alive, then we can code his/her status as -2
           (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
           health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98 
   
   2004-05-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Repository): 
           Agnes added a direct estimation of mortality (without the need of
           computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
           REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
           mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
           the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
           within former imach program (0.96d) without deteriorating too much
           the understanding of the program. 
   
   2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module): 
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
           which slows down the processing. The difference can be up to 10%
           lower mortality.
   
   2002-05-30    <brouard@BROUARD>
   
           * imach.c (Module): Add correlation matrix of one-step
           probabilities and covariance matrix
   
Removed from v.1.52  
changed lines
  Added in v.1.68

FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>