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Diff for /imach/src/ChangeLog between versions 1.6 and 1.11

version 1.6, 2003/06/17 20:16:05 version 1.11, 2004/06/05 08:56:52
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 2003-06-17  Brouard Nicolas  <brouard@homebrou>  2004-05-20  Brouard Nicolas  <brouard@localhost>
   
         * imach.c (Repository): Check when date of death was earlier that          * imach.c (Repository):
         current date of interview. It may happen when the death was just          Agnes added a direct estimation of mortality (without the need of
         prior to the death. In this case, dh was negative and likelihood          computing period prevalence and differential mortality). Thus here
         was wrong (infinity). We still send an "Error" but patch by          is version 0.97a which has been distributed to some people at
         assuming that the date of death was just one stepm after the          REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
         interview.          mortality using covariates is not done today. Estimating direct
         (Repository): Because some people have very long ID (first column)          mortality is a very different process because it doesn't need
         we changed int to long in num[] and we added a new lvector for          interpolation because it is easy to get the lx from the force of
         memory allocation. But we also truncated to 8 characters (left          the mortality mux in the simplest case as for a Gompertz (log mux
         truncation)          = a + b*x . But we have been able to incorporate the new code
         (Repository): No more line truncation errors.          within former imach program (0.96d) without deteriorating too much
           the understanding of the program.
 2003-06-14  Brouard Nicolas  <brouard@homebrou>  
   2003-06-25    <brouard@BROUARD>
         * imach.c (Repository): Add of a routine likelione (likelihood  
         only once) which prints on a text file          * imach.c (Module): On windows (cygwin) function asctime_r doesn't
         (ilk) the contributions to the likelihood for each          exist so I changed back to asctime which exists.
         individual/wave.          (Module): Version 0.96b
   
 2003-06-13  Brouard Nicolas  <brouard@homebrou>  2003-06-24    <brouard@BROUARD>
   
         * imach.c (Repository): Replace "freqsummary" at a correct          * imach.c (Module): Some bugs corrected for windows. Also, when
         place. It differs from routine "prevalence" which may be called          mle=-1 a template is output in file "or"mypar.txt with the design
         many times. Probs is memory consuming and must be used with          of the covariance matrix to be input.
         parcimony.  
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
 2003-06-17    <brouard@BROUARD>  
           * imach.c (Repository): Duplicated warning errors corrected.
         * timeval.h (Module): Added included file to make use of          (Repository): Elapsed time after each iteration is now output. It
         gettimeofday working on win32 with cygwin.          helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
 2003-05-16  Brouard Nicolas  <brouard@brouard>          concerning matrix of covariance. It has extension -cov.htm.
   
         * imach.c (Module): Insert of a warning if the delay between two  2003-06-23  Brouard Nicolas  <brouard@homebrou>
         waves is negative.  
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
         * imach.c (Module):  
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
 2003-05-03    <brouard@BROUARD>  
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
         * imach.c: Some cleaning  
 2003-03-28    <brouard@BROUARD>  2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
         * imach.c (Module): In version up to 0.92 likelihood was computed  
         as if date of death was unknown. Death was treated as any other          * imach.c (Repository): Check when date of death was earlier that
         health state: the date of the interview describes the actual state          current date of interview. It may happen when the death was just
         and not the date of a change in health state. The former idea was          prior to the death. In this case, dh was negative and likelihood
         to consider that at each interview the state was recorded          was wrong (infinity). We still send an "Error" but patch by
         (healthy, disable or death) and IMaCh was corrected; but when we          assuming that the date of death was just one stepm after the
         introduced the exact date of death then we should have modified          interview.
         the contribution of an exact death to the likelihood. This new          (Repository): Because some people have very long ID (first column)
         contribution is smaller and very dependent of the step unit          we changed int to long in num[] and we added a new lvector for
         stepm. It is no more the probability to die between last interview          memory allocation. But we also truncated to 8 characters (left
         and month of death but the probability to survive from last          truncation)
         interview up to one month before death multiplied by the  
         probability to die within a month. Thanks to Chris          (Repository): No more line truncation errors.
         Jackson for correcting this bug.  Former versions increased  
         mortality artificially. The bad side is that we add another loop  2003-06-14  Brouard Nicolas  <brouard@homebrou>
         which slows down the processing. The difference can be up to 10%  
         lower mortality.          * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
 2002-05-30    <brouard@BROUARD>          (ilk) the contributions to the likelihood for each
           individual/wave.
         *  
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
         * imach.c (Module): Add correlation matrix of one-step          * imach.c (Repository): Replace "freqsummary" at a correct
         probabilities and covariance matrix          place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module):
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
   
   
           which slows down the processing. The difference can be up to 10%
   
   
           lower mortality.
   
   
   
   
   
   2002-05-30    <brouard@BROUARD>
   
   
   
   
   
           *
   
   
   
   
   
           * imach.c (Module): Add correlation matrix of one-step
   
   
           probabilities and covariance matrix
   
   
   
   
   
Removed from v.1.6  
changed lines
  Added in v.1.11

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