Diff for /imach/src/ChangeLog between versions 1.45 and 1.68

version 1.45, 2021/03/31 14:11:04 version 1.68, 2024/04/24 20:53:06
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 2021-03-31  Nicolas Brouard   <brouard@ined.fr>  2024-04-24  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett          * (Module): This version comes late after having tested
           successfully the praxis C version of Buckhardt.  But Buckardt's
 2021-03-08  Nicolas Brouard   <brouard@ined.fr>          version was difficult to read and Gegenfurtner's version had a few
           typos which made its results less reliable than Buckhardt's
         * ./ (Module): Fixed bug on result:          results.  The most important work consisted in retyping the Brent
           original PRAXIS program written in Algol W (published with errors,
 2021-02-20  Nicolas Brouard   <brouard@ined.fr>          ommitting the transposition of matrix V before its QR reduction
           from Golub. I used the recent "awe" compiler from Gkynn Webster.
         * imach.c (Module): Fix bug on quitting after result lines!          The awe library had errors, for example in arc tangent function
         (Module): Version 0.99r21          which have been fixed.
   
 2021-02-12  Nicolas Brouard   <brouard@ined.fr>          The main objective was to get identical results with the three
           versions: (1) Algol W, (2) Buckhardt'C version as well (3)
         * imach.c (Module): The use of a Windows BOM (huge) file is now an error          Gegenfürtner C versions on the various test functions published by
           Brent in 1973 in Algol W.
   
 2021-02-11  Nicolas  Brouard   <brouard@ined.fr>          Also, in order to compare them, the random function had to produce
           the same sequence for the 3 softwares. The random function used in
         *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.          imach corresponds to original Brent's random function written in
           Algol W.  Other point, in Algol W, the arrays of dimension n are
 2020-02-22  Brouard Nicolas  <brouard@ined.fr>          'normal' mathematical arrays starting from 1 to n. But this is a
           real issue in C where, by default, arrays are starting from 0 to
         *  (Module): imach.c Update mle=-3 (for computing Life expectancy          n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
         and life table from the data without any state)          seen that authors while trying to mimick original Brent Algol W
           code are hesitating by changing either a loop originally from 1 to
 2019-05-20  Brouard Nicolas  <brouard@ined.fr>          n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
           shifting the index from original X(I) in Algol W to x[i-1] in C.
         * version.h: Summary: version 0.99.r19          But as IMaCh is using, since the beginning, the Numerical Recipes
           functions vector or matrix, I changed Geggenfürtner code to mimick
         * imach.c: Summary: Projection syntax simplified          the original Algol W arrays. Thus the X(I) is translated in C as
         We can now start projections, forward or backward, from the mean date          x[i] which minimizes the errors. The Golub QR algorithm was
         of inteviews up to or down to a number of years of projection:          published in Algol with overflow errors which were reproduced in
         prevforecast=1 yearsfproj=15.3 mobil_average=0          Brent's Algol W code. Buckhardt code fixed these errors which are
         or          much more problematic in C than in Algol W.  Thus Buckhardt code
         prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0          seems very safe, but i haven't chosen it for IMaCh because the C
         or          style is horrible and almost unreadable compared to Gegenfürtner
         prevbackcast=1 yearsbproj=12.3 mobil_average=1          CO code which is very close to Brent's original. Also what makes
         or          Buckhardt code more difficult to read is, instead of passing the
         prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1          minimum of parameters in the functions calls, as it is in Algol
           Brent's code or Gegenfürtner's code, the list of parameters is
 2019-05-18  Brouard Nicolas  <brouard@ined.fr>          high. For example, the flin function LONG REAL PROCEDURE FLIN
           (LONG REAL VALUE L) has only one parameter in Algol W, the
         * imach.c: Summary: doxygen tex bug          Gegenfürtner flin function had two parameters: static double
           flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
 2019-05-16  Brouard Nicolas  <brouard@ined.fr>          function has 14 parameters which makes the code unreadable and
           useless. Gegenfürtner used a lot of static variables or functions
         * imach.c: Summary: There was some wrong lines added          which I tried to minimize. Also in Gegefürtner, array dimensions
           were fixed to N. In my adaptation the flin is static double
 2019-05-09  Brouard Nicolas  <brouard@ined.fr>          flin(double l, int j) and the parameter used are global variables.
   
         * Makefile, imach.c: *** empty log message ***  2023-06-14  Nicolas Brouard   <brouard@ined.fr>
   
         * ChangeLog: Summary: C=          * imach.c (Module): Testing if conjugate gradient could be quicker
           when lot of variables POWELLORIGINCONJUGATE
         * imach.c: Summary: Some updates  
   2023-05-23  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Before ncovmax  
           * imach.c (Module): Fixed PROB_r 
         * version.h: *** empty log message ***  
   2023-05-22  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: 0.99r18 unlimited number of individuals  
         The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.          * imach.c (Module): In the ILK....txt file, the number of columns
           before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
 2018-12-13  Brouard Nicolas  <brouard@ined.fr>  
   2023-05-08  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Bug for young ages (<-30) will be in r17  
           *  (Module): Error V0 when result:. and model 1+age+V1: fixed
 2018-12-05  Brouard Nicolas  <brouard@ined.fr>  
   2023-04-29  Nicolas Brouard  <brouard@ined.fr>
         * Makefile: Summary: 0.99r16  
           * imach.c (Module): Inverting the model equation and fixingg bugs
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>          in the drawings
           "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
         * imach.c: Summary: Some bugs fixed  
   2023-04-24  Nicolas Brouard  <brouard@ined.fr>
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): some bugs in printinggnuplot 
         * imach.c:  Summary: Bug for young ages (<-30) will be in r17  
   2022-09-19  Nicolas Brouard   <brouard@ined.fr>
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Version 0.99r42 needed a newer version of
         * imach.c: Summary: Some bugs fixed          Gnuplot. But newer version 0.99r43 should run with the Gnuplot
           version 5.0 or 5.1 distributed with IMaCh.
 2018-05-01  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-18  Nicolas Brouard   <brouard@ined.fr>
         * imach.c:  
         Summary: Bug fixed by providing frequencies only for non missing covariates          * imach.c (Module): Fixing when a state in the data is 0 or higher
           than lstate+ndeath. Fixing the plot of contribution to Likelihood.
 2018-04-27  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-16  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: some minor bugs  
           * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you  Feinuo
 2018-04-21  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-14  Nicolas Brouard   <brouard@ined.fr>
         * README.txt: *** empty log message ***  
           * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
         * imach.c: Summary: Some bugs fixed, valgrind tested  
   2022-09-14  Nicolas Brouard   <brouard@ined.fr>
 2018-04-20  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Version 0.99r39 with colored dummy covariates
         * Makefile, README.txt, setup.iss: Summary: imach 0.99r16          (fixed or time varying), using new last columns of
           ILK_parameter.txt file.
         * imach.c:  
         Summary: Computing mean and stdeviation of fixed quantitative variables  2022-09-11  Nicolas Brouard   <brouard@ined.fr>
   
 2018-04-19  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Adding timevarying products of any kinds,
           should work before shifting cotvar from ncovcol+nqv columns in
         * imach.c: Summary: Some minor bugs fixed          order to have a correspondance between the column of cotvar and
           the id of column.
         * version.h: *** empty log message ***          (Module): Some cleaning and adding covariates in ILK.txt
   
 2018-02-27  Brouard Nicolas  <brouard@ined.fr>  2022-09-09  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c (Module): Many improvements for fixing products of fixed
           timevarying as well as fixed * fixed, and test with quantitative
         * imach.c: Summary: Adding second argument for quitting          covariate.
   
 2018-02-21  Brouard Nicolas  <brouard@ined.fr>  2022-09-04  Nicolas Brouard   <brouard@ined.fr>
   
         * Makefile, README.txt, imach.c: Summary: 0.99r15          * imach.c (Module): Now the easy runs i.e. without result or
         New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c          model=1+age only did not work. The defautl combination should be 1
           and not 0 because everything hasn't been tranformed yet.
 2017-07-20  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-02  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: temporary working  
           * imach.c: Version 0.99r35 because it outputs same results with
 2017-07-19  Brouard Nicolas  <brouard@ined.fr>          1+age+V1+V1*age for females and 1+age for females only
           (education=1 noweight)
         * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)  
   2022-08-31  Nicolas Brouard   <brouard@ined.fr>
 2017-07-17  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
         * imach.c: Summary: BOM files can be read now  
   2022-08-21  Nicolas Brouard   <brouard@ined.fr>
 2017-06-30  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Version 0.99r33 A lot of changes in
         * imach.c: Summary: Graphs improvements          reassigning covariates: my first idea was that people will always
           use the first covariate V1 into the model but in fact they are
         * imach.c: Summary: Saito's color          producing data with many covariates and can use an equation model
           with some of the covariate; it means that in a model V2+V3 instead
 2017-06-29  Brouard Nicolas  <brouard@ined.fr>          of codtabm(k,Tvaraff[j]) which calculates for combination k, for
           three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
         * imach.c: Summary: Version 0.99r14          the equation model is restricted to two variables only (V2, V3)
           and the combination for V2 should be codtabm(k,1) instead of
 2017-06-27  Brouard Nicolas  <brouard@ined.fr>          (codtabm(k,2), and the code should be
           codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
         * imach.c: Summary: More documentation on projections          made. All of these should be simplified once a day like we did in
           hpxij() for example by using precov[nres] which is computed in
         * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)          decoderesult for each nres of each resultline. Loop should be done
           on the equation model globally by distinguishing only product with
         * imach.c: Summary: Some bug with rint          age (which are changing with age) and no more on type of
           covariates, single dummies, single covariates. 
 2017-05-24  Brouard Nicolas  <brouard@ined.fr>  
   2022-08-06  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
 2017-05-23  Brouard Nicolas  <brouard@ined.fr>  
   2022-08-03  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Code into subroutine, cleanings  
           *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
 2017-05-18  Brouard Nicolas  <brouard@ined.fr>  
   2022-07-25  Brouard Nicolas  <brouard@brouard.name>
         * imach.c:  
         Summary: backprojection and confidence intervals of backprevalence          * imach.c (Module): Error cptcovn instead of nsd in bmij (was
           coredumped, revealed by Feiuno, thank you.
 2017-05-13  Brouard Nicolas  <brouard@ined.fr>  
   2022-07-23  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: temporary save for backprojection  
           * r29 W and not sqrt(Wald)
         * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)  
   2022-07-22  Nicolas Brouard   <brouard@ined.fr>
 2017-04-26  Brouard Nicolas  <brouard@ined.fr>  
           *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
         * imach.c: Summary: imach 0.99r13 Some bugs fixed  
   2022-06-02  Brouard Nicolas  <brouard@brouard.name>
         * imach.c: Summary: Labels in graphs  
           * imach.c (Module): Adding the Wald tests from the log to the main
 2017-04-24  Brouard Nicolas  <brouard@ined.fr>          htm for better display of the maximum likelihood estimators.
   
         * imach.c: Summary: to save  2022-05-30  Brouard Nicolas  <brouard@brouard.name>
   
 2017-04-18  Brouard Nicolas  <brouard@ined.fr>          * imach.c: With products of covariates (age or dummies or
           quantitatives), estimates of parameters were good but when
         * imach.c: *** empty log message ***          estimating variances the positions of newly created covariates
           were wrongly assigned and results were wrong. Thank to Feinua_Sun!
 2017-04-05  Brouard Nicolas  <brouard@ined.fr>  
   2022-05-24  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1  
           * imach.c (Module): Some attempts to find a bug of wrong estimates
 2017-04-04  Brouard Nicolas  <brouard@ined.fr>          of confidencce intervals with product in the equation modelC
   
         * imach.c: Summary: Gnuplot indexations fixed (humm)  2022-05-15  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c:          * imach.c (Module):  Some minor improvements
         Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3  
   2022-04-13  Brouard Nicolas  <brouard@brouard.name>
 2017-04-03  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Adding link to text data files
         * imach.c: Summary: Version 0.99r12  
         Some cleanings, conformed with updated documentation.  2022-04-11  Nicolas Brouard   <brouard@ined.fr>
   
 2017-03-30  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
   
         * version.h: *** empty log message ***  2022-04-05  Brouard Nicolas  <brouard@ined.fr>
   
         * version.h: Summary:0.99r11          * imach.c (Module): Fixed covariates (dummy or quantitative)
           with missing values have never been allowed but are ERRORS and
 2017-03-29  Brouard Nicolas  <brouard@ined.fr>          program quits. Standard deviations of fixed covariates were
           wrongly computed. Mean and standard deviations of time varying
         * imach.c: Summary: Temp          covariates are still not computed.
   
 2017-03-27  Brouard Nicolas  <brouard@ined.fr>  2022-03-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Temporary          * 99r25 Improvements in fixing discrepancies between covariates
           missing in result line but in model. 
 2017-03-08  Brouard Nicolas  <brouard@ined.fr>  
   *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed          * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
   
         * imach.c: Summary: Fixing data parameter line  *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
   
 2016-12-15  Brouard Nicolas  <brouard@ined.fr>          * ./ (Module): Fixed bug on result:
   
         * imach.c: Summary: 0.99 in progress  *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
   
 2016-09-15  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Fix bug on quitting after result lines!
           (Module): Version 0.99r21
         * imach.c: *** empty log message ***  
   2021-02-12  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: not working  
           * imach.c (Module): The use of a Windows BOM (huge) file is now an error
 2016-09-08  Brouard Nicolas  <brouard@ined.fr>  
   
         * imach.c: Summary: continue  2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
   
 2016-09-07  Brouard Nicolas  <brouard@ined.fr>          *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
   
         * imach.c: Summary: Starting values from frequencies  2020-02-22  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          *  (Module): imach.c Update mle=-3 (for computing Life expectancy
           and life table from the data without any state)
 2016-09-02  Brouard Nicolas  <brouard@ined.fr>  
   2019-05-20  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * version.h: Summary: version 0.99.r19
 2016-08-30  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Projection syntax simplified
         * imach.c: Summary: Fixing a lots          We can now start projections, forward or backward, from the mean date
           of inteviews up to or down to a number of years of projection:
 2016-08-29  Brouard Nicolas  <brouard@ined.fr>          prevforecast=1 yearsfproj=15.3 mobil_average=0
           or
         * imach.c: Summary: gnuplot problem in Back projection to fix          prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
           or
         * imach.c: Summary: Better          prevbackcast=1 yearsbproj=12.3 mobil_average=1
           or
 2016-08-26  Brouard Nicolas  <brouard@ined.fr>          prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
   
         * imach.c:  2019-05-18  Brouard Nicolas  <brouard@ined.fr>
         Summary: Improvement in Powell output in order to copy and paste  
           * imach.c: Summary: doxygen tex bug
         * imach.c: Summary: Starting tests of 0.99  
   2019-05-16  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: to valgrind  
           * imach.c: Summary: There was some wrong lines added
 2016-08-25  Brouard Nicolas  <brouard@ined.fr>  
   2019-05-09  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * Makefile, imach.c: *** empty log message ***
 2016-08-23  Brouard Nicolas  <brouard@ined.fr>  
           * ChangeLog: Summary: C=
         * imach.c: *** empty log message ***  
           * imach.c: Summary: Some updates
         * imach.c: Summary: not working  
           * imach.c: Summary: Before ncovmax
 2016-08-22  Brouard Nicolas  <brouard@ined.fr>  
           * version.h: *** empty log message ***
         * imach.c: Summary: not working  
           * imach.c: Summary: 0.99r18 unlimited number of individuals
         * imach.c: Summary: Not working          The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
   
 2016-07-23  Brouard Nicolas  <brouard@ined.fr>  2018-12-13  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Completing for func too          * imach.c: Summary: Bug for young ages (<-30) will be in r17
   
 2016-07-22  Brouard Nicolas  <brouard@ined.fr>  2018-12-05  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Fixing some arrays, still debugging          * Makefile: Summary: 0.99r16
   
 2016-07-21  Brouard Nicolas  <brouard@ined.fr>  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c:          * imach.c: Summary: Some bugs fixed
         Summary: 0.99 working (more or less) for Asian Workshop on multitate methods  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
 2016-07-12  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c:  Summary: Bug for young ages (<-30) will be in r17
         * imach.c: Summary: temp  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: saving but not running  
           * imach.c: Summary: Some bugs fixed
 2016-07-01  Brouard Nicolas  <brouard@ined.fr>  
   2018-05-01  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Fixes  
           * imach.c:
 2016-02-19  Brouard Nicolas  <brouard@ined.fr>          Summary: Bug fixed by providing frequencies only for non missing covariates
   
         * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7  2018-04-27  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss, Makefile, version.h: *** empty log message ***          * imach.c: Summary: some minor bugs
   
         * imach.c: Summary: temporary  2018-04-21  Brouard Nicolas  <brouard@ined.fr>
   
 2016-02-17  Brouard Nicolas  <brouard@ined.fr>          * README.txt: *** empty log message ***
   
         * imach.c: Summary: Probably last 0.98 stable version 0.98r6          * imach.c: Summary: Some bugs fixed, valgrind tested
   
 2016-02-16  Brouard Nicolas  <brouard@ined.fr>  2018-04-20  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: minor bug          * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
   
         * imach.c: Summary: 0.99r2          * imach.c:
           Summary: Computing mean and stdeviation of fixed quantitative variables
 2016-02-15  Brouard Nicolas  <brouard@ined.fr>  
   2018-04-19  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * imach.c: Summary: Some minor bugs fixed
 2016-02-12  Brouard Nicolas  <brouard@ined.fr>  
           * version.h: *** empty log message ***
         * imach.c: Summary: 0.99 Back projections  
   2018-02-27  Brouard Nicolas  <brouard@ined.fr>
 2015-12-23  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: *** empty log message ***
         * imach.c: Summary: Experimental backcast  
           * imach.c: Summary: Adding second argument for quitting
 2015-12-18  Brouard Nicolas  <brouard@ined.fr>  
   2018-02-21  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.98r4 Warning and status=-2  
           * Makefile, README.txt, imach.c: Summary: 0.99r15
         Version 0.98r4 is now:          New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
          - displaying an error when status is -1, date of interview unknown and date of death known;  
          - permitting a status -2 when the vital status is unknown at a known date of right truncation.  2017-07-20  Brouard Nicolas  <brouard@ined.fr>
         Older changes concerning s=-2, dating from 2005 have been supersed.  
           * imach.c: Summary: temporary working
         * Makefile: *** empty log message ***  
   2017-07-19  Brouard Nicolas  <brouard@ined.fr>
 2015-12-16  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
         * Makefile: *** empty log message ***  
   2017-07-17  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.98r4 working  
           * imach.c: Summary: BOM files can be read now
         * Makefile: Summary: linuxrpm added  
   2017-06-30  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * imach.c: Summary: Graphs improvements
         * imach.c: Summary: temporary not working  
           * imach.c: Summary: Saito's color
 2015-12-11  Brouard Nicolas  <brouard@ined.fr>  
   2017-06-29  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.98r4  
           * imach.c: Summary: Version 0.99r14
 2015-12-08  Brouard Nicolas  <brouard@ined.fr>  
   2017-06-27  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * imach.c: Summary: More documentation on projections
 2015-11-21  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
         * Makefile:  
         Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more          * imach.c: Summary: Some bug with rint
   
         * imach.c: Summary: minor typo  2017-05-24  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional          * imach.c: *** empty log message ***
   
         Author: Nicolas Brouard  2017-05-23  Brouard Nicolas  <brouard@ined.fr>
   
 2015-11-18  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Code into subroutine, cleanings
   
         * imach.c: Summary: Start working on projected prevalences  2017-05-18  Brouard Nicolas  <brouard@ined.fr>
   
 2015-11-17  Brouard Nicolas  <brouard@ined.fr>          * imach.c:
           Summary: backprojection and confidence intervals of backprevalence
         * imach.c: Summary: Adding ftolpl parameter  
         Author: N Brouard  2017-05-13  Brouard Nicolas  <brouard@ined.fr>
   
         We had difficulties to get smoothed confidence intervals. It was due          * imach.c: Summary: temporary save for backprojection
         to the period prevalence which wasn't computed accurately. The inner  
         parameter ftolpl is now an outer parameter of the .imach parameter          * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
         file after estepm. If ftolpl is small 1.e-4 and estepm too,  
         computation are long.  2017-04-26  Brouard Nicolas  <brouard@ined.fr>
   
         * version.h: *** empty log message ***          * imach.c: Summary: imach 0.99r13 Some bugs fixed
   
         * imach.c: Summary: temporary          * imach.c: Summary: Labels in graphs
   
 2015-10-27  Brouard Nicolas  <brouard@ined.fr>  2017-04-24  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: *** empty log message ***          * imach.c: Summary: to save
   
         * setup.iss.in: Summary: some new subdirs  2017-04-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: *** empty log message ***
   
         * setup.iss.in:  2017-04-05  Brouard Nicolas  <brouard@ined.fr>
         Summary: Adding gnuplot 5.1 with bin and etc for pango fonts  
           * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
 2015-10-24  Brouard Nicolas  <brouard@ined.fr>  
   2017-04-04  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * imach.c: Summary: Gnuplot indexations fixed (humm)
 2015-10-23  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c:
         * imach.c:          Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
         Summary: 0.98r3 some clarification for graphs on likelihood contributions  
   2017-04-03  Brouard Nicolas  <brouard@ined.fr>
 2015-10-01  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Version 0.99r12
         * imach.c: Summary: Some new graphs of contribution to likelihood          Some cleanings, conformed with updated documentation.
   
 2015-09-30  Brouard Nicolas  <brouard@ined.fr>  2017-03-30  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile:          * version.h: *** empty log message ***
         Summary: Version read from version.h, itself read with cmake  
           * version.h: Summary:0.99r11
         * imach.c: Summary: looking at better estimation of the hessian  
   2017-03-29  Brouard Nicolas  <brouard@ined.fr>
         Also a better criteria for convergence to the period prevalence And  
         therefore adding the number of years needed to converge. (The          * imach.c: Summary: Temp
         prevalence in any alive state shold sum to one  
   2017-03-27  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * imach.c: Summary: Temporary
 2015-09-22  Brouard Nicolas  <brouard@ined.fr>  
   2017-03-08  Brouard Nicolas  <brouard@ined.fr>
         * imach.c:  
         Summary: Adding some overall graph on contribution to likelihood. Might change          * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
   
 2015-09-15  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Fixing data parameter line
   
         * Makefile: *** empty log message ***  2016-12-15  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r0          * imach.c: Summary: 0.99 in progress
   
         - Some new graphs like suvival functions  2016-09-15  Brouard Nicolas  <brouard@ined.fr>
         - Some bugs fixed like model=1+age+V2.  
           * imach.c: *** empty log message ***
         * ChangeLog, Makefile: Summary: 0.98r0  
           * imach.c: Summary: not working
         * CMakeLists.txt: Summary: Some tests for setup.iss  
   2016-09-08  Brouard Nicolas  <brouard@ined.fr>
 2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  
           * imach.c: Summary: continue
         *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc  
   2016-09-07  Brouard Nicolas  <brouard@ined.fr>
 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>  
           * imach.c: Summary: Starting values from frequencies
         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.  
           * imach.c: *** empty log message ***
 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  
   2016-09-02  Brouard Nicolas  <brouard@ined.fr>
         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)  
           * imach.c: *** empty log message ***
 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>  
   2016-08-30  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Merging 1.61 to 1.162  
           * imach.c: Summary: Fixing a lots
 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>  
   2016-08-29  Brouard Nicolas  <brouard@ined.fr>
         * prevlim.h (Module):  
           * imach.c: Summary: gnuplot problem in Back projection to fix
 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>  
           * imach.c: Summary: Better
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...  
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.  2016-08-26  Brouard Nicolas  <brouard@ined.fr>
   
 2010-04-29  brouard  <brouard@ined.fr>          * imach.c:
           Summary: Improvement in Powell output in order to copy and paste
         * imach.c (Module): Checking covariates for more complex models  
         than V1+V2. A lot of change to be done. Unstable.          * imach.c: Summary: Starting tests of 0.99
   
 2010-04-26  brouard  <brouard@ined.fr>          * imach.c: Summary: to valgrind
   
         * imach.c (Module): merging some libgsl code. Fixing computation  2016-08-25  Brouard Nicolas  <brouard@ined.fr>
         of likelione (using inter/intrapolation if mle = 0) in order to  
         get same likelihood as if mle=1.          * imach.c: *** empty log message ***
         Some cleaning of code and comments added.  
   2016-08-23  Brouard Nicolas  <brouard@ined.fr>
 2009-10-29  brouard  <brouard@ined.fr>  
           * imach.c: *** empty log message ***
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.  
           * imach.c: Summary: not working
 2006-06-30  Brouard Nicolas  <brouard@localhost>  
   2016-08-22  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Clarifications on computing e.j  
           * imach.c: Summary: not working
 2006-04-28  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: Not working
         * imach.c (Module): Yes the sum of survivors was wrong since  
         imach-114 because nhstepm was no more computed in the age  2016-07-23  Brouard Nicolas  <brouard@ined.fr>
         loop. Now we define nhstepma in the age loop.  
         (Module): In order to speed up (in case of numerous covariates) we          * imach.c: Summary: Completing for func too
         compute health expectancies (without variances) in a first step  
         and then all the health expectancies with variances or standard  2016-07-22  Brouard Nicolas  <brouard@ined.fr>
         deviation (needs data from the Hessian matrices) which slows the  
         computation.          * imach.c: Summary: Fixing some arrays, still debugging
         In the future we should be able to stop the program is only health  
         expectancies and graph are needed without standard deviations.  2016-07-21  Brouard Nicolas  <brouard@ined.fr>
   
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * imach.c:
           Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
         * imach.iss (Module):  
   2016-07-12  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): bugs in evsi + population file added in htm output file  
           * imach.c: Summary: temp
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * imach.c: Summary: saving but not running
         * imach.c (Module):  
   2016-07-01  Brouard Nicolas  <brouard@ined.fr>
 2006-03-20  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: Fixes
         * imach.c (Module): <title> changed, corresponds to .htm file  
         name. <head> headers where missing.  2016-02-19  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile (Module): 0.98g          * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
   
         * imach.c (Module): Weights can have a decimal point as for          * setup.iss, Makefile, version.h: *** empty log message ***
         English (a comma might work with a correct LC_NUMERIC environment,  
         otherwise the weight is truncated).          * imach.c: Summary: temporary
         Modification of warning when the covariates values are not 0 or  
         1.  2016-02-17  Brouard Nicolas  <brouard@ined.fr>
         Version 0.98g  
           * imach.c: Summary: Probably last 0.98 stable version 0.98r6
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
   2016-02-16  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Comments concerning covariates added  
           * imach.c: Summary: minor bug
         * noreg-setup.iss (Module): Version 0.98f  
           * imach.c: Summary: 0.99r2
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup  
   2016-02-15  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): refinements in the computation of lli if  
         status=-2 in order to have more reliable computation if stepm is          * imach.c: *** empty log message ***
         not 1 month. Version 0.98f  
   2016-02-12  Brouard Nicolas  <brouard@ined.fr>
 2006-03-15  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: 0.99 Back projections
         * imach.c (Module): Bug if status = -2, the loglikelihood was  
         computed as likelihood omitting the logarithm. Version O.98e  2015-12-23  Brouard Nicolas  <brouard@ined.fr>
   
 2006-03-14  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: Experimental backcast
   
         * imach.c (Module): varevsij Comments added explaining the second  2015-12-18  Brouard Nicolas  <brouard@ined.fr>
         table of variances if popbased=1 .  
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.          * imach.c: Summary: 0.98r4 Warning and status=-2
         (Module): Function pstamp added  
         (Module): Version 0.98d          Version 0.98r4 is now:
            - displaying an error when status is -1, date of interview unknown and date of death known;
 2006-03-06  Brouard Nicolas  <brouard@localhost>           - permitting a status -2 when the vital status is unknown at a known date of right truncation.
           Older changes concerning s=-2, dating from 2005 have been supersed.
         * imach.c (Module): Variance-covariance wrong links and  
         varian-covariance of ej. is needed (Saito).          * Makefile: *** empty log message ***
   
 2006-02-27  Brouard Nicolas  <brouard@localhost>  2015-12-16  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): One freematrix added in mlikeli!          * Makefile: *** empty log message ***
   
 2006-02-26  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: 0.98r4 working
   
         * imach.c (Module): Some improvements in processing parameter          * Makefile: Summary: linuxrpm added
         filename with strsep.  
           * Makefile: *** empty log message ***
 2006-02-24  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: temporary not working
         * imach.c (Module): Memory leaks checks with valgrind and:  
         datafile was not closed, some imatrix were not freed and on matrix  2015-12-11  Brouard Nicolas  <brouard@ined.fr>
         allocation too.  
           * imach.c: Summary: 0.98r4
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
   2015-12-08  Brouard Nicolas  <brouard@ined.fr>
         * strsep.c (Module): Inclusion because not in mingw32!!!  
           * Makefile: *** empty log message ***
         * setup.iss.in (Module): IMACHSETUPVERSION added  
   2015-11-21  Brouard Nicolas  <brouard@ined.fr>
         * noreg-setup.iss (Module): added to cvs tree  
           * Makefile:
         * Makefile (Module): IMACHSETUPVERSION added          Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
   
 2006-01-30  BROUARD Nicolas  <brouard@localhost>          * imach.c: Summary: minor typo
   
         * Makefile (Module, Module): Latest Makefile          * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
   
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe          Author: Nicolas Brouard
   
 2006-01-27  BROUARD Nicolas  <brouard@localhost>  2015-11-18  Brouard Nicolas  <brouard@ined.fr>
   
         * noreg-setup.iss (Module): ADDED          * imach.c: Summary: Start working on projected prevalences
   
 2006-01-24  BROUARD Nicolas  <brouard@localhost>  2015-11-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.          * imach.c: Summary: Adding ftolpl parameter
           Author: N Brouard
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>  
           We had difficulties to get smoothed confidence intervals. It was due
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg          to the period prevalence which wasn't computed accurately. The inner
           parameter ftolpl is now an outer parameter of the .imach parameter
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X          file after estepm. If ftolpl is small 1.e-4 and estepm too,
           computation are long.
 2005-09-30    <lievre@PC_00595>  
           * version.h: *** empty log message ***
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.  
         (Module): If the status is missing at the last wave but we know          * imach.c: Summary: temporary
         that the person is alive, then we can code his/her status as -2  
         (instead of missing=-1 in earlier versions) and his/her  2015-10-27  Brouard Nicolas  <brouard@ined.fr>
         contributions to the likelihood is 1 - Prob of dying from last  
         health status (= 1-p13= p11+p12 in the easiest case of somebody in          * Makefile: *** empty log message ***
         the healthy state at last known wave). Version is 0.98  
           * setup.iss.in: Summary: some new subdirs
 2004-05-20  Brouard Nicolas  <brouard@localhost>  
           * imach.c: *** empty log message ***
         * imach.c (Repository):  
         Agnes added a direct estimation of mortality (without the need of          * setup.iss.in:
         computing period prevalence and differential mortality). Thus here          Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
         is version 0.97a which has been distributed to some people at  
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of  2015-10-24  Brouard Nicolas  <brouard@ined.fr>
         mortality using covariates is not done today. Estimating direct  
         mortality is a very different process because it doesn't need          * imach.c: *** empty log message ***
         interpolation because it is easy to get the lx from the force of  
         the mortality mux in the simplest case as for a Gompertz (log mux  2015-10-23  Brouard Nicolas  <brouard@ined.fr>
         = a + b*x . But we have been able to incorporate the new code  
         within former imach program (0.96d) without deteriorating too much          * imach.c:
         the understanding of the program.          Summary: 0.98r3 some clarification for graphs on likelihood contributions
   
 2003-06-25    <brouard@BROUARD>  2015-10-01  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't          * imach.c: Summary: Some new graphs of contribution to likelihood
         exist so I changed back to asctime which exists.  
         (Module): Version 0.96b  2015-09-30  Brouard Nicolas  <brouard@ined.fr>
   
 2003-06-24    <brouard@BROUARD>          * Makefile:
           Summary: Version read from version.h, itself read with cmake
         * imach.c (Module): Some bugs corrected for windows. Also, when  
         mle=-1 a template is output in file "or"mypar.txt with the design          * imach.c: Summary: looking at better estimation of the hessian
         of the covariance matrix to be input.  
           Also a better criteria for convergence to the period prevalence And
 2003-06-25  Brouard Nicolas  <brouard@homebrou>          therefore adding the number of years needed to converge. (The
           prevalence in any alive state shold sum to one
         * imach.c (Repository): Duplicated warning errors corrected.  
         (Repository): Elapsed time after each iteration is now output. It          * Makefile: *** empty log message ***
         helps to forecast when convergence will be reached. Elapsed time  
         is stamped in powell.  We created a new html file for the graphs  2015-09-22  Brouard Nicolas  <brouard@ined.fr>
         concerning matrix of covariance. It has extension -cov.htm.  
           * imach.c:
 2003-06-23  Brouard Nicolas  <brouard@homebrou>          Summary: Adding some overall graph on contribution to likelihood. Might change
   
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.  2015-09-15  Brouard Nicolas  <brouard@ined.fr>
   
 2003-06-18  Brouard Nicolas  <brouard@homebrou>          * Makefile: *** empty log message ***
   
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96          * imach.c: Summary: 0.98r0
   
 2003-06-17  Brouard Nicolas  <brouard@homebrou>          - Some new graphs like survival functions
           - Some bugs fixed like model=1+age+V2.
   
         * imach.c (Repository): Check when date of death was earlier that          * ChangeLog, Makefile: Summary: 0.98r0
         current date of interview. It may happen when the death was just  
         prior to the death. In this case, dh was negative and likelihood          * CMakeLists.txt: Summary: Some tests for setup.iss
         was wrong (infinity). We still send an "Error" but patch by  
         assuming that the date of death was just one stepm after the  2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         interview.  
         (Repository): Because some people have very long ID (first column)          *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
         we changed int to long in num[] and we added a new lvector for  
         memory allocation. But we also truncated to 8 characters (left  2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
         truncation)  
           *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
         (Repository): No more line truncation errors.  
   2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
 2003-06-14  Brouard Nicolas  <brouard@homebrou>  
           *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
         * imach.c (Repository): Add of a routine likelione (likelihood  
         only once) which prints on a text file  2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
         (ilk) the contributions to the likelihood for each  
         individual/wave.          * imach.c (Module): Merging 1.61 to 1.162
   
 2003-06-13  Brouard Nicolas  <brouard@homebrou>  2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
         * imach.c (Repository): Replace "freqsummary" at a correct  
         place. It differs from routine "prevalence" which may be called          * prevlim.h (Module): 
         many times. Probs is memory consuming and must be used with  
         parcimony.  2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
   
 2003-06-17    <brouard@BROUARD>          * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
           (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
         * timeval.h (Module): Added included file to make use of  
         gettimeofday working on win32 with cygwin.  2010-04-29  brouard  <brouard@ined.fr>
   
 2003-05-16  Brouard Nicolas  <brouard@brouard>          * imach.c (Module): Checking covariates for more complex models
         * imach.c (Module): Insert of a warning if the delay between two          than V1+V2. A lot of change to be done. Unstable.
         waves is negative.  
   2010-04-26  brouard  <brouard@ined.fr>
         * imach.c (Module):  
           * imach.c (Module): merging some libgsl code. Fixing computation
 2003-05-03    <brouard@BROUARD>          of likelione (using inter/intrapolation if mle = 0) in order to
           get same likelihood as if mle=1.
         * imach.c: Some cleaning          Some cleaning of code and comments added.
   
 2003-03-28    <brouard@BROUARD>  2009-10-29  brouard  <brouard@ined.fr>
         * imach.c (Module): In version up to 0.92 likelihood was computed  
         as if date of death was unknown. Death was treated as any other          * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
         health state: the date of the interview describes the actual state  
         and not the date of a change in health state. The former idea was  2006-06-30  Brouard Nicolas  <brouard@localhost>
         to consider that at each interview the state was recorded  
         (healthy, disable or death) and IMaCh was corrected; but when we          * imach.c (Module): Clarifications on computing e.j
         introduced the exact date of death then we should have modified  
         the contribution of an exact death to the likelihood. This new  2006-04-28  Brouard Nicolas  <brouard@localhost>
         contribution is smaller and very dependent of the step unit  
         stepm. It is no more the probability to die between last interview          * imach.c (Module): Yes the sum of survivors was wrong since
         and month of death but the probability to survive from last          imach-114 because nhstepm was no more computed in the age
         interview up to one month before death multiplied by the          loop. Now we define nhstepma in the age loop.
         probability to die within a month. Thanks to Chris          (Module): In order to speed up (in case of numerous covariates) we
         Jackson for correcting this bug.  Former versions increased          compute health expectancies (without variances) in a first step
         mortality artificially. The bad side is that we add another loop          and then all the health expectancies with variances or standard
           deviation (needs data from the Hessian matrices) which slows the
           computation.
         which slows down the processing. The difference can be up to 10%          In the future we should be able to stop the program is only health
           expectancies and graph are needed without standard deviations.
   
         lower mortality.  2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.iss (Module): 
   
           * imach.c (Module): bugs in evsi + population file added in htm output file
   
 2002-05-30    <brouard@BROUARD>  2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): 
   
   2006-03-20  Brouard Nicolas  <brouard@localhost>
   
         *          * imach.c (Module): <title> changed, corresponds to .htm file
           name. <head> headers where missing.
   
           * Makefile (Module): 0.98g
   
           * imach.c (Module): Weights can have a decimal point as for
         * imach.c (Module): Add correlation matrix of one-step          English (a comma might work with a correct LC_NUMERIC environment,
           otherwise the weight is truncated).
           Modification of warning when the covariates values are not 0 or
         probabilities and covariance matrix          1. 
           Version 0.98g
   
   2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): Comments concerning covariates added
   
           * noreg-setup.iss (Module): Version 0.98f
   
           * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
   
           * imach.c (Module): refinements in the computation of lli if
           status=-2 in order to have more reliable computation if stepm is
           not 1 month. Version 0.98f
   
   2006-03-15  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Bug if status = -2, the loglikelihood was
           computed as likelihood omitting the logarithm. Version O.98e
   
   2006-03-14  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): varevsij Comments added explaining the second
           table of variances if popbased=1 .
           (Module): Covariances of eij, ekl added, graphs fixed, new html link.
           (Module): Function pstamp added
           (Module): Version 0.98d 
   
   2006-03-06  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Variance-covariance wrong links and
           varian-covariance of ej. is needed (Saito).
   
   2006-02-27  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): One freematrix added in mlikeli!
   
   2006-02-26  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Some improvements in processing parameter
           filename with strsep.
   
   2006-02-24  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Memory leaks checks with valgrind and:
           datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
   
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * strsep.c (Module): Inclusion because not in mingw32!!!
   
           * setup.iss.in (Module): IMACHSETUPVERSION added
   
           * noreg-setup.iss (Module): added to cvs tree
   
           * Makefile (Module): IMACHSETUPVERSION added
   
   2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
           * Makefile (Module, Module): Latest Makefile
   
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
           * noreg-setup.iss (Module): ADDED
   
   2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
           * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
   2005-09-30    <lievre@PC_00595>
   
           * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
           that the person is alive, then we can code his/her status as -2
           (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
           health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98 
   
   2004-05-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Repository): 
           Agnes added a direct estimation of mortality (without the need of
           computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
           REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
           mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
           the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
           within former imach program (0.96d) without deteriorating too much
           the understanding of the program. 
   
   2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module): 
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
           which slows down the processing. The difference can be up to 10%
           lower mortality.
   
   2002-05-30    <brouard@BROUARD>
   
           * imach.c (Module): Add correlation matrix of one-step
           probabilities and covariance matrix
   

Removed from v.1.45  
changed lines
  Added in v.1.68


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