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-version 1.12, 2005/09/30 15:52:32
+version 1.69, 2024/04/30 10:58:21
  Line 1
--09-30    <lievre@PC_00595>
+-04-30  Nicolas Brouard   <brouard@ined.fr>
-         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
+         * (Module): In version 0.99s4, we incorporated the calculation of
+         the std error of the proportion of total life expectancy spent in
--05-20  Brouard Nicolas  <brouard@localhost>
+         a specific state Var(e.j/e..) using the formula of Var(X/Y)
+         depending only of the variances of X and Y and expectancies.
-         * imach.c (Repository):
-         Agnes added a direct estimation of mortality (without the need of
+-04-24  Nicolas Brouard   <brouard@ined.fr>
-         computing period prevalence and differential mortality). Thus here
-         is version 0.97a which has been distributed to some people at
+         * (Module): This version comes late after having tested
-         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
+         successfully the praxis C version of Buckhardt.  But Buckardt's
-         mortality using covariates is not done today. Estimating direct
+         version was difficult to read and Gegenfurtner's version had a few
-         mortality is a very different process because it doesn't need
+         typos which made its results less reliable than Buckhardt's
-         interpolation because it is easy to get the lx from the force of
+         results.  The most important work consisted in retyping the Brent
-         the mortality mux in the simplest case as for a Gompertz (log mux
+         original PRAXIS program written in Algol W (published with errors,
-         = a + b*x . But we have been able to incorporate the new code
+         ommitting the transposition of matrix V before its QR reduction
-         within former imach program (0.96d) without deteriorating too much
+         from Golub. I used the recent "awe" compiler from Gkynn Webster.
-         the understanding of the program.
+         The awe library had errors, for example in arc tangent function
+         which have been fixed.
--06-25    <brouard@BROUARD>
+         The main objective was to get identical results with the three
-         * imach.c (Module): On windows (cygwin) function asctime_r doesn't
+         versions: (1) Algol W, (2) Buckhardt'C version as well (3)
-         exist so I changed back to asctime which exists.
+         Gegenfürtner C versions on the various test functions published by
-         (Module): Version 0.96b
+         Brent in 1973 in Algol W.
--06-24    <brouard@BROUARD>
+         Also, in order to compare them, the random function had to produce
+         the same sequence for the 3 softwares. The random function used in
-         * imach.c (Module): Some bugs corrected for windows. Also, when
+         imach corresponds to original Brent's random function written in
-         mle=-1 a template is output in file "or"mypar.txt with the design
+         Algol W.  Other point, in Algol W, the arrays of dimension n are
-         of the covariance matrix to be input.
+         'normal' mathematical arrays starting from 1 to n. But this is a
+         real issue in C where, by default, arrays are starting from 0 to
--06-25  Brouard Nicolas  <brouard@homebrou>
+         n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
+         seen that authors while trying to mimick original Brent Algol W
-         * imach.c (Repository): Duplicated warning errors corrected.
+         code are hesitating by changing either a loop originally from 1 to
-         (Repository): Elapsed time after each iteration is now output. It
+         n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
-         helps to forecast when convergence will be reached. Elapsed time
+         shifting the index from original X(I) in Algol W to x[i-1] in C.
-         is stamped in powell.  We created a new html file for the graphs
+         But as IMaCh is using, since the beginning, the Numerical Recipes
-         concerning matrix of covariance. It has extension -cov.htm.
+         functions vector or matrix, I changed Geggenfürtner code to mimick
+         the original Algol W arrays. Thus the X(I) is translated in C as
--06-23  Brouard Nicolas  <brouard@homebrou>
+         x[i] which minimizes the errors. The Golub QR algorithm was
+         published in Algol with overflow errors which were reproduced in
-         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
+         Brent's Algol W code. Buckhardt code fixed these errors which are
+         much more problematic in C than in Algol W.  Thus Buckhardt code
--06-18  Brouard Nicolas  <brouard@homebrou>
+         seems very safe, but i haven't chosen it for IMaCh because the C
+         style is horrible and almost unreadable compared to Gegenfürtner
-         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
+         CO code which is very close to Brent's original. Also what makes
+         Buckhardt code more difficult to read is, instead of passing the
--06-17  Brouard Nicolas  <brouard@homebrou>
+         minimum of parameters in the functions calls, as it is in Algol
+         Brent's code or Gegenfürtner's code, the list of parameters is
+         high. For example, the flin function LONG REAL PROCEDURE FLIN
-         * imach.c (Repository): Check when date of death was earlier that
+         (LONG REAL VALUE L) has only one parameter in Algol W, the
-         current date of interview. It may happen when the death was just
+         Gegenfürtner flin function had two parameters: static double
-         prior to the death. In this case, dh was negative and likelihood
+         flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
-         was wrong (infinity). We still send an "Error" but patch by
+         function has 14 parameters which makes the code unreadable and
-         assuming that the date of death was just one stepm after the
+         useless. Gegenfürtner used a lot of static variables or functions
-         interview.
+         which I tried to minimize. Also in Gegefürtner, array dimensions
-         (Repository): Because some people have very long ID (first column)
+         were fixed to N. In my adaptation the flin is static double
-         we changed int to long in num[] and we added a new lvector for
+         flin(double l, int j) and the parameter used are global variables.
-         memory allocation. But we also truncated to 8 characters (left
-         truncation)
+-06-14  Nicolas Brouard   <brouard@ined.fr>
-         (Repository): No more line truncation errors.
+         * imach.c (Module): Testing if conjugate gradient could be quicker
+         when lot of variables POWELLORIGINCONJUGATE
--06-14  Brouard Nicolas  <brouard@homebrou>
+-05-23  Nicolas Brouard   <brouard@ined.fr>
-         * imach.c (Repository): Add of a routine likelione (likelihood
-         only once) which prints on a text file
+         * imach.c (Module): Fixed PROB_r
-         (ilk) the contributions to the likelihood for each
-         individual/wave.
+-05-22  Nicolas Brouard   <brouard@ined.fr>
--06-13  Brouard Nicolas  <brouard@homebrou>
+         * imach.c (Module): In the ILK....txt file, the number of columns
-         * imach.c (Repository): Replace "freqsummary" at a correct
+         before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
-         place. It differs from routine "prevalence" which may be called
-         many times. Probs is memory consuming and must be used with
+-05-08  Nicolas Brouard   <brouard@ined.fr>
-         parcimony.
+         *  (Module): Error V0 when result:. and model 1+age+V1: fixed
--06-17    <brouard@BROUARD>
+-04-29  Nicolas Brouard  <brouard@ined.fr>
-         * timeval.h (Module): Added included file to make use of
-         gettimeofday working on win32 with cygwin.
+         * imach.c (Module): Inverting the model equation and fixingg bugs
+         in the drawings
--05-16  Brouard Nicolas  <brouard@brouard>
+         "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
-         * imach.c (Module): Insert of a warning if the delay between two
-         waves is negative.
+-04-24  Nicolas Brouard  <brouard@ined.fr>
-         * imach.c (Module):
+         * imach.c (Module): some bugs in printinggnuplot
--05-03    <brouard@BROUARD>
+-09-19  Nicolas Brouard   <brouard@ined.fr>
-         * imach.c: Some cleaning
+         * imach.c (Module): Version 0.99r42 needed a newer version of
+         Gnuplot. But newer version 0.99r43 should run with the Gnuplot
--03-28    <brouard@BROUARD>
+         version 5.0 or 5.1 distributed with IMaCh.
-         * imach.c (Module): In version up to 0.92 likelihood was computed
-         as if date of death was unknown. Death was treated as any other
+-09-18  Nicolas Brouard   <brouard@ined.fr>
-         health state: the date of the interview describes the actual state
-         and not the date of a change in health state. The former idea was
+         * imach.c (Module): Fixing when a state in the data is 0 or higher
-         to consider that at each interview the state was recorded
+         than lstate+ndeath. Fixing the plot of contribution to Likelihood.
-         (healthy, disable or death) and IMaCh was corrected; but when we
-         introduced the exact date of death then we should have modified
+-09-16  Nicolas Brouard   <brouard@ined.fr>
-         the contribution of an exact death to the likelihood. This new
-         contribution is smaller and very dependent of the step unit
+         * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you  Feinuo
-         stepm. It is no more the probability to die between last interview
-         and month of death but the probability to survive from last
+-09-14  Nicolas Brouard   <brouard@ined.fr>
-         interview up to one month before death multiplied by the
-         probability to die within a month. Thanks to Chris
+         * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
-         Jackson for correcting this bug.  Former versions increased
-         mortality artificially. The bad side is that we add another loop
+-09-14  Nicolas Brouard   <brouard@ined.fr>
+         * imach.c (Module): Version 0.99r39 with colored dummy covariates
-         which slows down the processing. The difference can be up to 10%
+         (fixed or time varying), using new last columns of
+         ILK_parameter.txt file.
-         lower mortality.
+-09-11  Nicolas Brouard   <brouard@ined.fr>
+         * imach.c (Module): Adding timevarying products of any kinds,
+         should work before shifting cotvar from ncovcol+nqv columns in
+         order to have a correspondance between the column of cotvar and
+         the id of column.
--05-30    <brouard@BROUARD>
+         (Module): Some cleaning and adding covariates in ILK.txt
+-09-09  Nicolas Brouard   <brouard@ined.fr>
+         * imach.c (Module): Many improvements for fixing products of fixed
+         timevarying as well as fixed * fixed, and test with quantitative
-         *
+         covariate.
+-09-04  Nicolas Brouard   <brouard@ined.fr>
+         * imach.c (Module): Now the easy runs i.e. without result or
+         model=1+age only did not work. The defautl combination should be 1
-         * imach.c (Module): Add correlation matrix of one-step
+         and not 0 because everything hasn't been tranformed yet.
+-09-02  Nicolas Brouard   <brouard@ined.fr>
-         probabilities and covariance matrix
+         * imach.c: Version 0.99r35 because it outputs same results with
++age+V1+V1*age for females and 1+age for females only
+         (education=1 noweight)
+-08-31  Nicolas Brouard   <brouard@ined.fr>
+         * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
+-08-21  Nicolas Brouard   <brouard@ined.fr>
+         * imach.c (Module): Version 0.99r33 A lot of changes in
+         reassigning covariates: my first idea was that people will always
+         use the first covariate V1 into the model but in fact they are
+         producing data with many covariates and can use an equation model
+         with some of the covariate; it means that in a model V2+V3 instead
+         of codtabm(k,Tvaraff[j]) which calculates for combination k, for
+         three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
+         the equation model is restricted to two variables only (V2, V3)
+         and the combination for V2 should be codtabm(k,1) instead of
+         (codtabm(k,2), and the code should be
+         codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
+         made. All of these should be simplified once a day like we did in
+         hpxij() for example by using precov[nres] which is computed in
+         decoderesult for each nres of each resultline. Loop should be done
+         on the equation model globally by distinguishing only product with
+         age (which are changing with age) and no more on type of
+         covariates, single dummies, single covariates.
+-08-06  Nicolas Brouard   <brouard@ined.fr>
+         *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
+-08-03  Nicolas Brouard   <brouard@ined.fr>
+         *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
+-07-25  Brouard Nicolas  <brouard@brouard.name>
+         * imach.c (Module): Error cptcovn instead of nsd in bmij (was
+         coredumped, revealed by Feiuno, thank you.
+-07-23  Nicolas Brouard   <brouard@ined.fr>
+         * r29 W and not sqrt(Wald)
+-07-22  Nicolas Brouard   <brouard@ined.fr>
+         *  imach.c (Module): Output of Wald test in the htm file and not only in the log.
+-06-02  Brouard Nicolas  <brouard@brouard.name>
+         * imach.c (Module): Adding the Wald tests from the log to the main
+         htm for better display of the maximum likelihood estimators.
+-05-30  Brouard Nicolas  <brouard@brouard.name>
+         * imach.c: With products of covariates (age or dummies or
+         quantitatives), estimates of parameters were good but when
+         estimating variances the positions of newly created covariates
+         were wrongly assigned and results were wrong. Thank to Feinua_Sun!
+-05-24  Nicolas Brouard   <brouard@ined.fr>
+         * imach.c (Module): Some attempts to find a bug of wrong estimates
+         of confidencce intervals with product in the equation modelC
+-05-15  Nicolas Brouard   <brouard@ined.fr>
+         * imach.c (Module):  Some minor improvements
+-04-13  Brouard Nicolas  <brouard@brouard.name>
+         * imach.c (Module): Adding link to text data files
+-04-11  Nicolas Brouard   <brouard@ined.fr>
+         * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
+-04-05  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c (Module): Fixed covariates (dummy or quantitative)
+         with missing values have never been allowed but are ERRORS and
+         program quits. Standard deviations of fixed covariates were
+         wrongly computed. Mean and standard deviations of time varying
+         covariates are still not computed.
+-03-17  Brouard Nicolas  <brouard@ined.fr>
+         * 99r25 Improvements in fixing discrepancies between covariates
+         missing in result line but in model.
+ *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
+         * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
+ *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
+         * ./ (Module): Fixed bug on result:
+ *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
+         * imach.c (Module): Fix bug on quitting after result lines!
+         (Module): Version 0.99r21
+-02-12  Nicolas Brouard   <brouard@ined.fr>
+         * imach.c (Module): The use of a Windows BOM (huge) file is now an error
+-02-11  Nicolas  Brouard   <brouard@ined.fr>
+         *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
+-02-22  Brouard Nicolas  <brouard@ined.fr>
+         *  (Module): imach.c Update mle=-3 (for computing Life expectancy
+         and life table from the data without any state)
+-05-20  Brouard Nicolas  <brouard@ined.fr>
+         * version.h: Summary: version 0.99.r19
+         * imach.c: Summary: Projection syntax simplified
+         We can now start projections, forward or backward, from the mean date
+         of inteviews up to or down to a number of years of projection:
+         prevforecast=1 yearsfproj=15.3 mobil_average=0
+         or
+         prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
+         or
+         prevbackcast=1 yearsbproj=12.3 mobil_average=1
+         or
+         prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
+-05-18  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: doxygen tex bug
+-05-16  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: There was some wrong lines added
+-05-09  Brouard Nicolas  <brouard@ined.fr>
+         * Makefile, imach.c: *** empty log message ***
+         * ChangeLog: Summary: C=
+         * imach.c: Summary: Some updates
+         * imach.c: Summary: Before ncovmax
+         * version.h: *** empty log message ***
+         * imach.c: Summary: 0.99r18 unlimited number of individuals
+         The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
+-12-13  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Bug for young ages (<-30) will be in r17
+-12-05  Brouard Nicolas  <brouard@ined.fr>
+         * Makefile: Summary: 0.99r16
+-05-02  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Some bugs fixed
+-05-02  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c:  Summary: Bug for young ages (<-30) will be in r17
+-05-02  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Some bugs fixed
+-05-01  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c:
+         Summary: Bug fixed by providing frequencies only for non missing covariates
+-04-27  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: some minor bugs
+-04-21  Brouard Nicolas  <brouard@ined.fr>
+         * README.txt: *** empty log message ***
+         * imach.c: Summary: Some bugs fixed, valgrind tested
+-04-20  Brouard Nicolas  <brouard@ined.fr>
+         * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
+         * imach.c:
+         Summary: Computing mean and stdeviation of fixed quantitative variables
+-04-19  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Some minor bugs fixed
+         * version.h: *** empty log message ***
+-02-27  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: *** empty log message ***
+         * imach.c: Summary: Adding second argument for quitting
+-02-21  Brouard Nicolas  <brouard@ined.fr>
+         * Makefile, README.txt, imach.c: Summary: 0.99r15
+         New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
+-07-20  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: temporary working
+-07-19  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
+-07-17  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: BOM files can be read now
+-06-30  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Graphs improvements
+         * imach.c: Summary: Saito's color
+-06-29  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Version 0.99r14
+-06-27  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: More documentation on projections
+         * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
+         * imach.c: Summary: Some bug with rint
+-05-24  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: *** empty log message ***
+-05-23  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Code into subroutine, cleanings
+-05-18  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c:
+         Summary: backprojection and confidence intervals of backprevalence
+-05-13  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: temporary save for backprojection
+         * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
+-04-26  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: imach 0.99r13 Some bugs fixed
+         * imach.c: Summary: Labels in graphs
+-04-24  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: to save
+-04-18  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: *** empty log message ***
+-04-05  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
+-04-04  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Gnuplot indexations fixed (humm)
+         * imach.c:
+         Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
+-04-03  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Version 0.99r12
+         Some cleanings, conformed with updated documentation.
+-03-30  Brouard Nicolas  <brouard@ined.fr>
+         * version.h: *** empty log message ***
+         * version.h: Summary:0.99r11
+-03-29  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Temp
+-03-27  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Temporary
+-03-08  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
+         * imach.c: Summary: Fixing data parameter line
+-12-15  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: 0.99 in progress
+-09-15  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: *** empty log message ***
+         * imach.c: Summary: not working
+-09-08  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: continue
+-09-07  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Starting values from frequencies
+         * imach.c: *** empty log message ***
+-09-02  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: *** empty log message ***
+-08-30  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Fixing a lots
+-08-29  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: gnuplot problem in Back projection to fix
+         * imach.c: Summary: Better
+-08-26  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c:
+         Summary: Improvement in Powell output in order to copy and paste
+         * imach.c: Summary: Starting tests of 0.99
+         * imach.c: Summary: to valgrind
+-08-25  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: *** empty log message ***
+-08-23  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: *** empty log message ***
+         * imach.c: Summary: not working
+-08-22  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: not working
+         * imach.c: Summary: Not working
+-07-23  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Completing for func too
+-07-22  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Fixing some arrays, still debugging
+-07-21  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c:
+         Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
+-07-12  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: temp
+         * imach.c: Summary: saving but not running
+-07-01  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Fixes
+-02-19  Brouard Nicolas  <brouard@ined.fr>
+         * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
+         * setup.iss, Makefile, version.h: *** empty log message ***
+         * imach.c: Summary: temporary
+-02-17  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Probably last 0.98 stable version 0.98r6
+-02-16  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: minor bug
+         * imach.c: Summary: 0.99r2
+-02-15  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: *** empty log message ***
+-02-12  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: 0.99 Back projections
+-12-23  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Experimental backcast
+-12-18  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: 0.98r4 Warning and status=-2
+         Version 0.98r4 is now:
+          - displaying an error when status is -1, date of interview unknown and date of death known;
+          - permitting a status -2 when the vital status is unknown at a known date of right truncation.
+         Older changes concerning s=-2, dating from 2005 have been supersed.
+         * Makefile: *** empty log message ***
+-12-16  Brouard Nicolas  <brouard@ined.fr>
+         * Makefile: *** empty log message ***
+         * imach.c: Summary: 0.98r4 working
+         * Makefile: Summary: linuxrpm added
+         * Makefile: *** empty log message ***
+         * imach.c: Summary: temporary not working
+-12-11  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: 0.98r4
+-12-08  Brouard Nicolas  <brouard@ined.fr>
+         * Makefile: *** empty log message ***
+-11-21  Brouard Nicolas  <brouard@ined.fr>
+         * Makefile:
+         Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
+         * imach.c: Summary: minor typo
+         * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
+         Author: Nicolas Brouard
+-11-18  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Start working on projected prevalences
+-11-17  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Adding ftolpl parameter
+         Author: N Brouard
+         We had difficulties to get smoothed confidence intervals. It was due
+         to the period prevalence which wasn't computed accurately. The inner
+         parameter ftolpl is now an outer parameter of the .imach parameter
+         file after estepm. If ftolpl is small 1.e-4 and estepm too,
+         computation are long.
+         * version.h: *** empty log message ***
+         * imach.c: Summary: temporary
+-10-27  Brouard Nicolas  <brouard@ined.fr>
+         * Makefile: *** empty log message ***
+         * setup.iss.in: Summary: some new subdirs
+         * imach.c: *** empty log message ***
+         * setup.iss.in:
+         Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
+-10-24  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: *** empty log message ***
+-10-23  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c:
+         Summary: 0.98r3 some clarification for graphs on likelihood contributions
+-10-01  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c: Summary: Some new graphs of contribution to likelihood
+-09-30  Brouard Nicolas  <brouard@ined.fr>
+         * Makefile:
+         Summary: Version read from version.h, itself read with cmake
+         * imach.c: Summary: looking at better estimation of the hessian
+         Also a better criteria for convergence to the period prevalence And
+         therefore adding the number of years needed to converge. (The
+         prevalence in any alive state shold sum to one
+         * Makefile: *** empty log message ***
+-09-22  Brouard Nicolas  <brouard@ined.fr>
+         * imach.c:
+         Summary: Adding some overall graph on contribution to likelihood. Might change
+-09-15  Brouard Nicolas  <brouard@ined.fr>
+         * Makefile: *** empty log message ***
+         * imach.c: Summary: 0.98r0
+         - Some new graphs like survival functions
+         - Some bugs fixed like model=1+age+V2.
+         * ChangeLog, Makefile: Summary: 0.98r0
+         * CMakeLists.txt: Summary: Some tests for setup.iss
+-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
+         *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
+-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
+         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
+-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
+         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
+-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
+         * imach.c (Module): Merging 1.61 to 1.162
+-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
+         * prevlim.h (Module):
+-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
+         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
+         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
+-04-29  brouard  <brouard@ined.fr>
+         * imach.c (Module): Checking covariates for more complex models
+         than V1+V2. A lot of change to be done. Unstable.
+-04-26  brouard  <brouard@ined.fr>
+         * imach.c (Module): merging some libgsl code. Fixing computation
+         of likelione (using inter/intrapolation if mle = 0) in order to
+         get same likelihood as if mle=1.
+         Some cleaning of code and comments added.
+-10-29  brouard  <brouard@ined.fr>
+         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
+-06-30  Brouard Nicolas  <brouard@localhost>
+         * imach.c (Module): Clarifications on computing e.j
+-04-28  Brouard Nicolas  <brouard@localhost>
+         * imach.c (Module): Yes the sum of survivors was wrong since
+         imach-114 because nhstepm was no more computed in the age
+         loop. Now we define nhstepma in the age loop.
+         (Module): In order to speed up (in case of numerous covariates) we
+         compute health expectancies (without variances) in a first step
+         and then all the health expectancies with variances or standard
+         deviation (needs data from the Hessian matrices) which slows the
+         computation.
+         In the future we should be able to stop the program is only health
+         expectancies and graph are needed without standard deviations.
+-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
+         * imach.iss (Module):
+         * imach.c (Module): bugs in evsi + population file added in htm output file
+-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
+         * imach.c (Module):
+-03-20  Brouard Nicolas  <brouard@localhost>
+         * imach.c (Module): <title> changed, corresponds to .htm file
+         name. <head> headers where missing.
+         * Makefile (Module): 0.98g
+         * imach.c (Module): Weights can have a decimal point as for
+         English (a comma might work with a correct LC_NUMERIC environment,
+         otherwise the weight is truncated).
+         Modification of warning when the covariates values are not 0 or
+.
+         Version 0.98g
+-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
+         * imach.c (Module): Comments concerning covariates added
+         * noreg-setup.iss (Module): Version 0.98f
+         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
+         * imach.c (Module): refinements in the computation of lli if
+         status=-2 in order to have more reliable computation if stepm is
+         not 1 month. Version 0.98f
+-03-15  Brouard Nicolas  <brouard@localhost>
+         * imach.c (Module): Bug if status = -2, the loglikelihood was
+         computed as likelihood omitting the logarithm. Version O.98e
+-03-14  Brouard Nicolas  <brouard@localhost>
+         * imach.c (Module): varevsij Comments added explaining the second
+         table of variances if popbased=1 .
+         (Module): Covariances of eij, ekl added, graphs fixed, new html link.
+         (Module): Function pstamp added
+         (Module): Version 0.98d
+-03-06  Brouard Nicolas  <brouard@localhost>
+         * imach.c (Module): Variance-covariance wrong links and
+         varian-covariance of ej. is needed (Saito).
+-02-27  Brouard Nicolas  <brouard@localhost>
+         * imach.c (Module): One freematrix added in mlikeli!
+-02-26  Brouard Nicolas  <brouard@localhost>
+         * imach.c (Module): Some improvements in processing parameter
+         filename with strsep.
+-02-24  Brouard Nicolas  <brouard@localhost>
+         * imach.c (Module): Memory leaks checks with valgrind and:
+         datafile was not closed, some imatrix were not freed and on matrix
+         allocation too.
+-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
+         * strsep.c (Module): Inclusion because not in mingw32!!!
+         * setup.iss.in (Module): IMACHSETUPVERSION added
+         * noreg-setup.iss (Module): added to cvs tree
+         * Makefile (Module): IMACHSETUPVERSION added
+-01-30  BROUARD Nicolas  <brouard@localhost>
+         * Makefile (Module, Module): Latest Makefile
+         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
+-01-27  BROUARD Nicolas  <brouard@localhost>
+         * noreg-setup.iss (Module): ADDED
+-01-24  BROUARD Nicolas  <brouard@localhost>
+         * imach.c (Module): Comments (lines starting with a #) are allowed in data.
+-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
+         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
+         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
+-09-30    <lievre@PC_00595>
+         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
+         (Module): If the status is missing at the last wave but we know
+         that the person is alive, then we can code his/her status as -2
+         (instead of missing=-1 in earlier versions) and his/her
+         contributions to the likelihood is 1 - Prob of dying from last
+         health status (= 1-p13= p11+p12 in the easiest case of somebody in
+         the healthy state at last known wave). Version is 0.98
+-05-20  Brouard Nicolas  <brouard@localhost>
+         * imach.c (Repository):
+         Agnes added a direct estimation of mortality (without the need of
+         computing period prevalence and differential mortality). Thus here
+         is version 0.97a which has been distributed to some people at
+         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
+         mortality using covariates is not done today. Estimating direct
+         mortality is a very different process because it doesn't need
+         interpolation because it is easy to get the lx from the force of
+         the mortality mux in the simplest case as for a Gompertz (log mux
+         = a + b*x . But we have been able to incorporate the new code
+         within former imach program (0.96d) without deteriorating too much
+         the understanding of the program.
+-06-25    <brouard@BROUARD>
+         * imach.c (Module): On windows (cygwin) function asctime_r doesn't
+         exist so I changed back to asctime which exists.
+         (Module): Version 0.96b
+-06-24    <brouard@BROUARD>
+         * imach.c (Module): Some bugs corrected for windows. Also, when
+         mle=-1 a template is output in file "or"mypar.txt with the design
+         of the covariance matrix to be input.
+-06-25  Brouard Nicolas  <brouard@homebrou>
+         * imach.c (Repository): Duplicated warning errors corrected.
+         (Repository): Elapsed time after each iteration is now output. It
+         helps to forecast when convergence will be reached. Elapsed time
+         is stamped in powell.  We created a new html file for the graphs
+         concerning matrix of covariance. It has extension -cov.htm.
+-06-23  Brouard Nicolas  <brouard@homebrou>
+         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
+-06-18  Brouard Nicolas  <brouard@homebrou>
+         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
+-06-17  Brouard Nicolas  <brouard@homebrou>
+         * imach.c (Repository): Check when date of death was earlier that
+         current date of interview. It may happen when the death was just
+         prior to the death. In this case, dh was negative and likelihood
+         was wrong (infinity). We still send an "Error" but patch by
+         assuming that the date of death was just one stepm after the
+         interview.
+         (Repository): Because some people have very long ID (first column)
+         we changed int to long in num[] and we added a new lvector for
+         memory allocation. But we also truncated to 8 characters (left
+         truncation)
+         (Repository): No more line truncation errors.
+-06-14  Brouard Nicolas  <brouard@homebrou>
+         * imach.c (Repository): Add of a routine likelione (likelihood
+         only once) which prints on a text file
+         (ilk) the contributions to the likelihood for each
+         individual/wave.
+-06-13  Brouard Nicolas  <brouard@homebrou>
+         * imach.c (Repository): Replace "freqsummary" at a correct
+         place. It differs from routine "prevalence" which may be called
+         many times. Probs is memory consuming and must be used with
+         parcimony.
+-06-17    <brouard@BROUARD>
+         * timeval.h (Module): Added included file to make use of
+         gettimeofday working on win32 with cygwin.
+-05-16  Brouard Nicolas  <brouard@brouard>
+         * imach.c (Module): Insert of a warning if the delay between two
+         waves is negative.
+         * imach.c (Module):
+-05-03    <brouard@BROUARD>
+         * imach.c: Some cleaning
+-03-28    <brouard@BROUARD>
+         * imach.c (Module): In version up to 0.92 likelihood was computed
+         as if date of death was unknown. Death was treated as any other
+         health state: the date of the interview describes the actual state
+         and not the date of a change in health state. The former idea was
+         to consider that at each interview the state was recorded
+         (healthy, disable or death) and IMaCh was corrected; but when we
+         introduced the exact date of death then we should have modified
+         the contribution of an exact death to the likelihood. This new
+         contribution is smaller and very dependent of the step unit
+         stepm. It is no more the probability to die between last interview
+         and month of death but the probability to survive from last
+         interview up to one month before death multiplied by the
+         probability to die within a month. Thanks to Chris
+         Jackson for correcting this bug.  Former versions increased
+         mortality artificially. The bad side is that we add another loop
+         which slows down the processing. The difference can be up to 10%
+         lower mortality.
+-05-30    <brouard@BROUARD>
+         * imach.c (Module): Add correlation matrix of one-step
+         probabilities and covariance matrix

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