[BACK]Return to ChangeLog CVS log [TXT] [DIR] Up to [Local Repository] / imach / src

Diff for /imach/src/ChangeLog between versions 1.42 and 1.69

version 1.42, 2021/02/12 11:33:48 version 1.69, 2024/04/30 10:58:21
Line 1 Line 1
 2021-02-12  Nicolas Brouard   <brouard@ined.fr>  2024-04-30  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c (Module): The use of a Windows BOM (huge) file is now an error          * (Module): In version 0.99s4, we incorporated the calculation of
           the std error of the proportion of total life expectancy spent in
           a specific state Var(e.j/e..) using the formula of Var(X/Y)
 2021-02-11  Nicolas  Brouard   <brouard@ined.fr>          depending only of the variances of X and Y and expectancies.
   
         *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.  2024-04-24  Nicolas Brouard   <brouard@ined.fr>
   
 2020-02-22  Brouard Nicolas  <brouard@ined.fr>          * (Module): This version comes late after having tested
           successfully the praxis C version of Buckhardt.  But Buckardt's
         *  (Module): imach.c Update mle=-3 (for computing Life expectancy          version was difficult to read and Gegenfurtner's version had a few
         and life table from the data without any state)          typos which made its results less reliable than Buckhardt's
           results.  The most important work consisted in retyping the Brent
 2019-05-20  Brouard Nicolas  <brouard@ined.fr>          original PRAXIS program written in Algol W (published with errors,
           ommitting the transposition of matrix V before its QR reduction
         * version.h: Summary: version 0.99.r19          from Golub. I used the recent "awe" compiler from Gkynn Webster.
           The awe library had errors, for example in arc tangent function
         * imach.c: Summary: Projection syntax simplified          which have been fixed.
         We can now start projections, forward or backward, from the mean date  
         of inteviews up to or down to a number of years of projection:          The main objective was to get identical results with the three
         prevforecast=1 yearsfproj=15.3 mobil_average=0          versions: (1) Algol W, (2) Buckhardt'C version as well (3)
         or          Gegenfürtner C versions on the various test functions published by
         prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0          Brent in 1973 in Algol W.
         or  
         prevbackcast=1 yearsbproj=12.3 mobil_average=1          Also, in order to compare them, the random function had to produce
         or          the same sequence for the 3 softwares. The random function used in
         prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1          imach corresponds to original Brent's random function written in
           Algol W.  Other point, in Algol W, the arrays of dimension n are
 2019-05-18  Brouard Nicolas  <brouard@ined.fr>          'normal' mathematical arrays starting from 1 to n. But this is a
           real issue in C where, by default, arrays are starting from 0 to
         * imach.c: Summary: doxygen tex bug          n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
           seen that authors while trying to mimick original Brent Algol W
 2019-05-16  Brouard Nicolas  <brouard@ined.fr>          code are hesitating by changing either a loop originally from 1 to
           n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
         * imach.c: Summary: There was some wrong lines added          shifting the index from original X(I) in Algol W to x[i-1] in C.
           But as IMaCh is using, since the beginning, the Numerical Recipes
 2019-05-09  Brouard Nicolas  <brouard@ined.fr>          functions vector or matrix, I changed Geggenfürtner code to mimick
           the original Algol W arrays. Thus the X(I) is translated in C as
         * Makefile, imach.c: *** empty log message ***          x[i] which minimizes the errors. The Golub QR algorithm was
           published in Algol with overflow errors which were reproduced in
         * ChangeLog: Summary: C=          Brent's Algol W code. Buckhardt code fixed these errors which are
           much more problematic in C than in Algol W.  Thus Buckhardt code
         * imach.c: Summary: Some updates          seems very safe, but i haven't chosen it for IMaCh because the C
           style is horrible and almost unreadable compared to Gegenfürtner
         * imach.c: Summary: Before ncovmax          CO code which is very close to Brent's original. Also what makes
           Buckhardt code more difficult to read is, instead of passing the
         * version.h: *** empty log message ***          minimum of parameters in the functions calls, as it is in Algol
           Brent's code or Gegenfürtner's code, the list of parameters is
         * imach.c: Summary: 0.99r18 unlimited number of individuals          high. For example, the flin function LONG REAL PROCEDURE FLIN
         The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.          (LONG REAL VALUE L) has only one parameter in Algol W, the
           Gegenfürtner flin function had two parameters: static double
 2018-12-13  Brouard Nicolas  <brouard@ined.fr>          flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
           function has 14 parameters which makes the code unreadable and
         * imach.c: Summary: Bug for young ages (<-30) will be in r17          useless. Gegenfürtner used a lot of static variables or functions
           which I tried to minimize. Also in Gegefürtner, array dimensions
 2018-12-05  Brouard Nicolas  <brouard@ined.fr>          were fixed to N. In my adaptation the flin is static double
           flin(double l, int j) and the parameter used are global variables.
         * Makefile: Summary: 0.99r16  
   2023-06-14  Nicolas Brouard   <brouard@ined.fr>
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Testing if conjugate gradient could be quicker
         * imach.c: Summary: Some bugs fixed          when lot of variables POWELLORIGINCONJUGATE
   
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  2023-05-23  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c:  Summary: Bug for young ages (<-30) will be in r17          * imach.c (Module): Fixed PROB_r 
   
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  2023-05-22  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Some bugs fixed          * imach.c (Module): In the ILK....txt file, the number of columns
           before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
 2018-05-01  Brouard Nicolas  <brouard@ined.fr>  
   2023-05-08  Nicolas Brouard   <brouard@ined.fr>
         * imach.c:  
         Summary: Bug fixed by providing frequencies only for non missing covariates          *  (Module): Error V0 when result:. and model 1+age+V1: fixed
   
 2018-04-27  Brouard Nicolas  <brouard@ined.fr>  2023-04-29  Nicolas Brouard  <brouard@ined.fr>
   
         * imach.c: Summary: some minor bugs          * imach.c (Module): Inverting the model equation and fixingg bugs
           in the drawings
 2018-04-21  Brouard Nicolas  <brouard@ined.fr>          "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
   
         * README.txt: *** empty log message ***  2023-04-24  Nicolas Brouard  <brouard@ined.fr>
   
         * imach.c: Summary: Some bugs fixed, valgrind tested          * imach.c (Module): some bugs in printinggnuplot 
   
 2018-04-20  Brouard Nicolas  <brouard@ined.fr>  2022-09-19  Nicolas Brouard   <brouard@ined.fr>
   
         * Makefile, README.txt, setup.iss: Summary: imach 0.99r16          * imach.c (Module): Version 0.99r42 needed a newer version of
           Gnuplot. But newer version 0.99r43 should run with the Gnuplot
         * imach.c:          version 5.0 or 5.1 distributed with IMaCh.
         Summary: Computing mean and stdeviation of fixed quantitative variables  
   2022-09-18  Nicolas Brouard   <brouard@ined.fr>
 2018-04-19  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Fixing when a state in the data is 0 or higher
         * imach.c: Summary: Some minor bugs fixed          than lstate+ndeath. Fixing the plot of contribution to Likelihood.
   
         * version.h: *** empty log message ***  2022-09-16  Nicolas Brouard   <brouard@ined.fr>
   
 2018-02-27  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you  Feinuo
   
         * imach.c: *** empty log message ***  2022-09-14  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Adding second argument for quitting          * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
   
 2018-02-21  Brouard Nicolas  <brouard@ined.fr>  2022-09-14  Nicolas Brouard   <brouard@ined.fr>
   
         * Makefile, README.txt, imach.c: Summary: 0.99r15          * imach.c (Module): Version 0.99r39 with colored dummy covariates
         New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c          (fixed or time varying), using new last columns of
           ILK_parameter.txt file.
 2017-07-20  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-11  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: temporary working  
           * imach.c (Module): Adding timevarying products of any kinds,
 2017-07-19  Brouard Nicolas  <brouard@ined.fr>          should work before shifting cotvar from ncovcol+nqv columns in
           order to have a correspondance between the column of cotvar and
         * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)          the id of column.
           (Module): Some cleaning and adding covariates in ILK.txt
 2017-07-17  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-09  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: BOM files can be read now  
           * imach.c (Module): Many improvements for fixing products of fixed
 2017-06-30  Brouard Nicolas  <brouard@ined.fr>          timevarying as well as fixed * fixed, and test with quantitative
           covariate.
         * imach.c: Summary: Graphs improvements  
   2022-09-04  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Saito's color  
           * imach.c (Module): Now the easy runs i.e. without result or
 2017-06-29  Brouard Nicolas  <brouard@ined.fr>          model=1+age only did not work. The defautl combination should be 1
           and not 0 because everything hasn't been tranformed yet.
         * imach.c: Summary: Version 0.99r14  
   2022-09-02  Nicolas Brouard   <brouard@ined.fr>
 2017-06-27  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Version 0.99r35 because it outputs same results with
         * imach.c: Summary: More documentation on projections          1+age+V1+V1*age for females and 1+age for females only
           (education=1 noweight)
         * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)  
   2022-08-31  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Some bug with rint  
           * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
 2017-05-24  Brouard Nicolas  <brouard@ined.fr>  
   2022-08-21  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * imach.c (Module): Version 0.99r33 A lot of changes in
 2017-05-23  Brouard Nicolas  <brouard@ined.fr>          reassigning covariates: my first idea was that people will always
           use the first covariate V1 into the model but in fact they are
         * imach.c: Summary: Code into subroutine, cleanings          producing data with many covariates and can use an equation model
           with some of the covariate; it means that in a model V2+V3 instead
 2017-05-18  Brouard Nicolas  <brouard@ined.fr>          of codtabm(k,Tvaraff[j]) which calculates for combination k, for
           three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
         * imach.c:          the equation model is restricted to two variables only (V2, V3)
         Summary: backprojection and confidence intervals of backprevalence          and the combination for V2 should be codtabm(k,1) instead of
           (codtabm(k,2), and the code should be
 2017-05-13  Brouard Nicolas  <brouard@ined.fr>          codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
           made. All of these should be simplified once a day like we did in
         * imach.c: Summary: temporary save for backprojection          hpxij() for example by using precov[nres] which is computed in
           decoderesult for each nres of each resultline. Loop should be done
         * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)          on the equation model globally by distinguishing only product with
           age (which are changing with age) and no more on type of
 2017-04-26  Brouard Nicolas  <brouard@ined.fr>          covariates, single dummies, single covariates. 
   
         * imach.c: Summary: imach 0.99r13 Some bugs fixed  2022-08-06  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Labels in graphs          *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
   
 2017-04-24  Brouard Nicolas  <brouard@ined.fr>  2022-08-03  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: to save          *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
   
 2017-04-18  Brouard Nicolas  <brouard@ined.fr>  2022-07-25  Brouard Nicolas  <brouard@brouard.name>
   
         * imach.c: *** empty log message ***          * imach.c (Module): Error cptcovn instead of nsd in bmij (was
           coredumped, revealed by Feiuno, thank you.
 2017-04-05  Brouard Nicolas  <brouard@ined.fr>  
   2022-07-23  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1  
           * r29 W and not sqrt(Wald)
 2017-04-04  Brouard Nicolas  <brouard@ined.fr>  
   2022-07-22  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Gnuplot indexations fixed (humm)  
           *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
         * imach.c:  
         Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3  2022-06-02  Brouard Nicolas  <brouard@brouard.name>
   
 2017-04-03  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Adding the Wald tests from the log to the main
           htm for better display of the maximum likelihood estimators.
         * imach.c: Summary: Version 0.99r12  
         Some cleanings, conformed with updated documentation.  2022-05-30  Brouard Nicolas  <brouard@brouard.name>
   
 2017-03-30  Brouard Nicolas  <brouard@ined.fr>          * imach.c: With products of covariates (age or dummies or
           quantitatives), estimates of parameters were good but when
         * version.h: *** empty log message ***          estimating variances the positions of newly created covariates
           were wrongly assigned and results were wrong. Thank to Feinua_Sun!
         * version.h: Summary:0.99r11  
   2022-05-24  Nicolas Brouard   <brouard@ined.fr>
 2017-03-29  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Some attempts to find a bug of wrong estimates
         * imach.c: Summary: Temp          of confidencce intervals with product in the equation modelC
   
 2017-03-27  Brouard Nicolas  <brouard@ined.fr>  2022-05-15  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Temporary          * imach.c (Module):  Some minor improvements
   
 2017-03-08  Brouard Nicolas  <brouard@ined.fr>  2022-04-13  Brouard Nicolas  <brouard@brouard.name>
   
         * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed          * imach.c (Module): Adding link to text data files
   
         * imach.c: Summary: Fixing data parameter line  2022-04-11  Nicolas Brouard   <brouard@ined.fr>
   
 2016-12-15  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
   
         * imach.c: Summary: 0.99 in progress  2022-04-05  Brouard Nicolas  <brouard@ined.fr>
   
 2016-09-15  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Fixed covariates (dummy or quantitative)
           with missing values have never been allowed but are ERRORS and
         * imach.c: *** empty log message ***          program quits. Standard deviations of fixed covariates were
           wrongly computed. Mean and standard deviations of time varying
         * imach.c: Summary: not working          covariates are still not computed.
   
 2016-09-08  Brouard Nicolas  <brouard@ined.fr>  2022-03-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: continue          * 99r25 Improvements in fixing discrepancies between covariates
           missing in result line but in model. 
 2016-09-07  Brouard Nicolas  <brouard@ined.fr>  
   *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Starting values from frequencies          * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
   
         * imach.c: *** empty log message ***  *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
   
 2016-09-02  Brouard Nicolas  <brouard@ined.fr>          * ./ (Module): Fixed bug on result:
   
         * imach.c: *** empty log message ***  *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
   
 2016-08-30  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Fix bug on quitting after result lines!
           (Module): Version 0.99r21
         * imach.c: Summary: Fixing a lots  
   2021-02-12  Nicolas Brouard   <brouard@ined.fr>
 2016-08-29  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): The use of a Windows BOM (huge) file is now an error
         * imach.c: Summary: gnuplot problem in Back projection to fix  
   
         * imach.c: Summary: Better  2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
   
 2016-08-26  Brouard Nicolas  <brouard@ined.fr>          *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
   
         * imach.c:  2020-02-22  Brouard Nicolas  <brouard@ined.fr>
         Summary: Improvement in Powell output in order to copy and paste  
           *  (Module): imach.c Update mle=-3 (for computing Life expectancy
         * imach.c: Summary: Starting tests of 0.99          and life table from the data without any state)
   
         * imach.c: Summary: to valgrind  2019-05-20  Brouard Nicolas  <brouard@ined.fr>
   
 2016-08-25  Brouard Nicolas  <brouard@ined.fr>          * version.h: Summary: version 0.99.r19
   
         * imach.c: *** empty log message ***          * imach.c: Summary: Projection syntax simplified
           We can now start projections, forward or backward, from the mean date
 2016-08-23  Brouard Nicolas  <brouard@ined.fr>          of inteviews up to or down to a number of years of projection:
           prevforecast=1 yearsfproj=15.3 mobil_average=0
         * imach.c: *** empty log message ***          or
           prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
         * imach.c: Summary: not working          or
           prevbackcast=1 yearsbproj=12.3 mobil_average=1
 2016-08-22  Brouard Nicolas  <brouard@ined.fr>          or
           prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
         * imach.c: Summary: not working  
   2019-05-18  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Not working  
           * imach.c: Summary: doxygen tex bug
 2016-07-23  Brouard Nicolas  <brouard@ined.fr>  
   2019-05-16  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Completing for func too  
           * imach.c: Summary: There was some wrong lines added
 2016-07-22  Brouard Nicolas  <brouard@ined.fr>  
   2019-05-09  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Fixing some arrays, still debugging  
           * Makefile, imach.c: *** empty log message ***
 2016-07-21  Brouard Nicolas  <brouard@ined.fr>  
           * ChangeLog: Summary: C=
         * imach.c:  
         Summary: 0.99 working (more or less) for Asian Workshop on multitate methods          * imach.c: Summary: Some updates
   
 2016-07-12  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Before ncovmax
   
         * imach.c: Summary: temp          * version.h: *** empty log message ***
   
         * imach.c: Summary: saving but not running          * imach.c: Summary: 0.99r18 unlimited number of individuals
           The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
 2016-07-01  Brouard Nicolas  <brouard@ined.fr>  
   2018-12-13  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Fixes  
           * imach.c: Summary: Bug for young ages (<-30) will be in r17
 2016-02-19  Brouard Nicolas  <brouard@ined.fr>  
   2018-12-05  Brouard Nicolas  <brouard@ined.fr>
         * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7  
           * Makefile: Summary: 0.99r16
         * setup.iss, Makefile, version.h: *** empty log message ***  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: temporary  
           * imach.c: Summary: Some bugs fixed
 2016-02-17  Brouard Nicolas  <brouard@ined.fr>  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Probably last 0.98 stable version 0.98r6  
           * imach.c:  Summary: Bug for young ages (<-30) will be in r17
 2016-02-16  Brouard Nicolas  <brouard@ined.fr>  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: minor bug  
           * imach.c: Summary: Some bugs fixed
         * imach.c: Summary: 0.99r2  
   2018-05-01  Brouard Nicolas  <brouard@ined.fr>
 2016-02-15  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c:
         * imach.c: *** empty log message ***          Summary: Bug fixed by providing frequencies only for non missing covariates
   
 2016-02-12  Brouard Nicolas  <brouard@ined.fr>  2018-04-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.99 Back projections          * imach.c: Summary: some minor bugs
   
 2015-12-23  Brouard Nicolas  <brouard@ined.fr>  2018-04-21  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Experimental backcast          * README.txt: *** empty log message ***
   
 2015-12-18  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Some bugs fixed, valgrind tested
   
         * imach.c: Summary: 0.98r4 Warning and status=-2  2018-04-20  Brouard Nicolas  <brouard@ined.fr>
   
         Version 0.98r4 is now:          * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
          - displaying an error when status is -1, date of interview unknown and date of death known;  
          - permitting a status -2 when the vital status is unknown at a known date of right truncation.          * imach.c:
         Older changes concerning s=-2, dating from 2005 have been supersed.          Summary: Computing mean and stdeviation of fixed quantitative variables
   
         * Makefile: *** empty log message ***  2018-04-19  Brouard Nicolas  <brouard@ined.fr>
   
 2015-12-16  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Some minor bugs fixed
   
         * Makefile: *** empty log message ***          * version.h: *** empty log message ***
   
         * imach.c: Summary: 0.98r4 working  2018-02-27  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: Summary: linuxrpm added          * imach.c: *** empty log message ***
   
         * Makefile: *** empty log message ***          * imach.c: Summary: Adding second argument for quitting
   
         * imach.c: Summary: temporary not working  2018-02-21  Brouard Nicolas  <brouard@ined.fr>
   
 2015-12-11  Brouard Nicolas  <brouard@ined.fr>          * Makefile, README.txt, imach.c: Summary: 0.99r15
           New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
         * imach.c: Summary: 0.98r4  
   2017-07-20  Brouard Nicolas  <brouard@ined.fr>
 2015-12-08  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: temporary working
         * Makefile: *** empty log message ***  
   2017-07-19  Brouard Nicolas  <brouard@ined.fr>
 2015-11-21  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
         * Makefile:  
         Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more  2017-07-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: minor typo          * imach.c: Summary: BOM files can be read now
   
         * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional  2017-06-30  Brouard Nicolas  <brouard@ined.fr>
   
         Author: Nicolas Brouard          * imach.c: Summary: Graphs improvements
   
 2015-11-18  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Saito's color
   
         * imach.c: Summary: Start working on projected prevalences  2017-06-29  Brouard Nicolas  <brouard@ined.fr>
   
 2015-11-17  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Version 0.99r14
   
         * imach.c: Summary: Adding ftolpl parameter  2017-06-27  Brouard Nicolas  <brouard@ined.fr>
         Author: N Brouard  
           * imach.c: Summary: More documentation on projections
         We had difficulties to get smoothed confidence intervals. It was due  
         to the period prevalence which wasn't computed accurately. The inner          * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
         parameter ftolpl is now an outer parameter of the .imach parameter  
         file after estepm. If ftolpl is small 1.e-4 and estepm too,          * imach.c: Summary: Some bug with rint
         computation are long.  
   2017-05-24  Brouard Nicolas  <brouard@ined.fr>
         * version.h: *** empty log message ***  
           * imach.c: *** empty log message ***
         * imach.c: Summary: temporary  
   2017-05-23  Brouard Nicolas  <brouard@ined.fr>
 2015-10-27  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Code into subroutine, cleanings
         * Makefile: *** empty log message ***  
   2017-05-18  Brouard Nicolas  <brouard@ined.fr>
         * setup.iss.in: Summary: some new subdirs  
           * imach.c:
         * imach.c: *** empty log message ***          Summary: backprojection and confidence intervals of backprevalence
   
         * setup.iss.in:  2017-05-13  Brouard Nicolas  <brouard@ined.fr>
         Summary: Adding gnuplot 5.1 with bin and etc for pango fonts  
           * imach.c: Summary: temporary save for backprojection
 2015-10-24  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
         * imach.c: *** empty log message ***  
   2017-04-26  Brouard Nicolas  <brouard@ined.fr>
 2015-10-23  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: imach 0.99r13 Some bugs fixed
         * imach.c:  
         Summary: 0.98r3 some clarification for graphs on likelihood contributions          * imach.c: Summary: Labels in graphs
   
 2015-10-01  Brouard Nicolas  <brouard@ined.fr>  2017-04-24  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Some new graphs of contribution to likelihood          * imach.c: Summary: to save
   
 2015-09-30  Brouard Nicolas  <brouard@ined.fr>  2017-04-18  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile:          * imach.c: *** empty log message ***
         Summary: Version read from version.h, itself read with cmake  
   2017-04-05  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: looking at better estimation of the hessian  
           * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
         Also a better criteria for convergence to the period prevalence And  
         therefore adding the number of years needed to converge. (The  2017-04-04  Brouard Nicolas  <brouard@ined.fr>
         prevalence in any alive state shold sum to one  
           * imach.c: Summary: Gnuplot indexations fixed (humm)
         * Makefile: *** empty log message ***  
           * imach.c:
 2015-09-22  Brouard Nicolas  <brouard@ined.fr>          Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
   
         * imach.c:  2017-04-03  Brouard Nicolas  <brouard@ined.fr>
         Summary: Adding some overall graph on contribution to likelihood. Might change  
           * imach.c: Summary: Version 0.99r12
 2015-09-15  Brouard Nicolas  <brouard@ined.fr>          Some cleanings, conformed with updated documentation.
   
         * Makefile: *** empty log message ***  2017-03-30  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r0          * version.h: *** empty log message ***
   
         - Some new graphs like suvival functions          * version.h: Summary:0.99r11
         - Some bugs fixed like model=1+age+V2.  
   2017-03-29  Brouard Nicolas  <brouard@ined.fr>
         * ChangeLog, Makefile: Summary: 0.98r0  
           * imach.c: Summary: Temp
         * CMakeLists.txt: Summary: Some tests for setup.iss  
   2017-03-27  Brouard Nicolas  <brouard@ined.fr>
 2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  
           * imach.c: Summary: Temporary
         *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc  
   2017-03-08  Brouard Nicolas  <brouard@ined.fr>
 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>  
           * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.  
           * imach.c: Summary: Fixing data parameter line
 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  
   2016-12-15  Brouard Nicolas  <brouard@ined.fr>
         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)  
           * imach.c: Summary: 0.99 in progress
 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>  
   2016-09-15  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Merging 1.61 to 1.162  
           * imach.c: *** empty log message ***
 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>  
           * imach.c: Summary: not working
         * prevlim.h (Module):  
   2016-09-08  Brouard Nicolas  <brouard@ined.fr>
 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>  
           * imach.c: Summary: continue
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...  
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.  2016-09-07  Brouard Nicolas  <brouard@ined.fr>
   
 2010-04-29  brouard  <brouard@ined.fr>          * imach.c: Summary: Starting values from frequencies
   
         * imach.c (Module): Checking covariates for more complex models          * imach.c: *** empty log message ***
         than V1+V2. A lot of change to be done. Unstable.  
   2016-09-02  Brouard Nicolas  <brouard@ined.fr>
 2010-04-26  brouard  <brouard@ined.fr>  
           * imach.c: *** empty log message ***
         * imach.c (Module): merging some libgsl code. Fixing computation  
         of likelione (using inter/intrapolation if mle = 0) in order to  2016-08-30  Brouard Nicolas  <brouard@ined.fr>
         get same likelihood as if mle=1.  
         Some cleaning of code and comments added.          * imach.c: Summary: Fixing a lots
   
 2009-10-29  brouard  <brouard@ined.fr>  2016-08-29  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.          * imach.c: Summary: gnuplot problem in Back projection to fix
   
 2006-06-30  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: Better
   
         * imach.c (Module): Clarifications on computing e.j  2016-08-26  Brouard Nicolas  <brouard@ined.fr>
   
 2006-04-28  Brouard Nicolas  <brouard@localhost>          * imach.c:
           Summary: Improvement in Powell output in order to copy and paste
         * imach.c (Module): Yes the sum of survivors was wrong since  
         imach-114 because nhstepm was no more computed in the age          * imach.c: Summary: Starting tests of 0.99
         loop. Now we define nhstepma in the age loop.  
         (Module): In order to speed up (in case of numerous covariates) we          * imach.c: Summary: to valgrind
         compute health expectancies (without variances) in a first step  
         and then all the health expectancies with variances or standard  2016-08-25  Brouard Nicolas  <brouard@ined.fr>
         deviation (needs data from the Hessian matrices) which slows the  
         computation.          * imach.c: *** empty log message ***
         In the future we should be able to stop the program is only health  
         expectancies and graph are needed without standard deviations.  2016-08-23  Brouard Nicolas  <brouard@ined.fr>
   
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * imach.c: *** empty log message ***
   
         * imach.iss (Module):          * imach.c: Summary: not working
   
         * imach.c (Module): bugs in evsi + population file added in htm output file  2016-08-22  Brouard Nicolas  <brouard@ined.fr>
   
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * imach.c: Summary: not working
   
         * imach.c (Module):          * imach.c: Summary: Not working
   
 2006-03-20  Brouard Nicolas  <brouard@localhost>  2016-07-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): <title> changed, corresponds to .htm file          * imach.c: Summary: Completing for func too
         name. <head> headers where missing.  
   2016-07-22  Brouard Nicolas  <brouard@ined.fr>
         * Makefile (Module): 0.98g  
           * imach.c: Summary: Fixing some arrays, still debugging
         * imach.c (Module): Weights can have a decimal point as for  
         English (a comma might work with a correct LC_NUMERIC environment,  2016-07-21  Brouard Nicolas  <brouard@ined.fr>
         otherwise the weight is truncated).  
         Modification of warning when the covariates values are not 0 or          * imach.c:
         1.          Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
         Version 0.98g  
   2016-07-12  Brouard Nicolas  <brouard@ined.fr>
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * imach.c: Summary: temp
         * imach.c (Module): Comments concerning covariates added  
           * imach.c: Summary: saving but not running
         * noreg-setup.iss (Module): Version 0.98f  
   2016-07-01  Brouard Nicolas  <brouard@ined.fr>
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup  
           * imach.c: Summary: Fixes
         * imach.c (Module): refinements in the computation of lli if  
         status=-2 in order to have more reliable computation if stepm is  2016-02-19  Brouard Nicolas  <brouard@ined.fr>
         not 1 month. Version 0.98f  
           * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
 2006-03-15  Brouard Nicolas  <brouard@localhost>  
           * setup.iss, Makefile, version.h: *** empty log message ***
         * imach.c (Module): Bug if status = -2, the loglikelihood was  
         computed as likelihood omitting the logarithm. Version O.98e          * imach.c: Summary: temporary
   
 2006-03-14  Brouard Nicolas  <brouard@localhost>  2016-02-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): varevsij Comments added explaining the second          * imach.c: Summary: Probably last 0.98 stable version 0.98r6
         table of variances if popbased=1 .  
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.  2016-02-16  Brouard Nicolas  <brouard@ined.fr>
         (Module): Function pstamp added  
         (Module): Version 0.98d          * imach.c: Summary: minor bug
   
 2006-03-06  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: 0.99r2
   
         * imach.c (Module): Variance-covariance wrong links and  2016-02-15  Brouard Nicolas  <brouard@ined.fr>
         varian-covariance of ej. is needed (Saito).  
           * imach.c: *** empty log message ***
 2006-02-27  Brouard Nicolas  <brouard@localhost>  
   2016-02-12  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): One freematrix added in mlikeli!  
           * imach.c: Summary: 0.99 Back projections
 2006-02-26  Brouard Nicolas  <brouard@localhost>  
   2015-12-23  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Some improvements in processing parameter  
         filename with strsep.          * imach.c: Summary: Experimental backcast
   
 2006-02-24  Brouard Nicolas  <brouard@localhost>  2015-12-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Memory leaks checks with valgrind and:          * imach.c: Summary: 0.98r4 Warning and status=-2
         datafile was not closed, some imatrix were not freed and on matrix  
         allocation too.          Version 0.98r4 is now:
            - displaying an error when status is -1, date of interview unknown and date of death known;
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>           - permitting a status -2 when the vital status is unknown at a known date of right truncation.
           Older changes concerning s=-2, dating from 2005 have been supersed.
         * strsep.c (Module): Inclusion because not in mingw32!!!  
           * Makefile: *** empty log message ***
         * setup.iss.in (Module): IMACHSETUPVERSION added  
   2015-12-16  Brouard Nicolas  <brouard@ined.fr>
         * noreg-setup.iss (Module): added to cvs tree  
           * Makefile: *** empty log message ***
         * Makefile (Module): IMACHSETUPVERSION added  
           * imach.c: Summary: 0.98r4 working
 2006-01-30  BROUARD Nicolas  <brouard@localhost>  
           * Makefile: Summary: linuxrpm added
         * Makefile (Module, Module): Latest Makefile  
           * Makefile: *** empty log message ***
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe  
           * imach.c: Summary: temporary not working
 2006-01-27  BROUARD Nicolas  <brouard@localhost>  
   2015-12-11  Brouard Nicolas  <brouard@ined.fr>
         * noreg-setup.iss (Module): ADDED  
           * imach.c: Summary: 0.98r4
 2006-01-24  BROUARD Nicolas  <brouard@localhost>  
   2015-12-08  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.  
           * Makefile: *** empty log message ***
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>  
   2015-11-21  Brouard Nicolas  <brouard@ined.fr>
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg  
           * Makefile:
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X          Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
   
 2005-09-30    <lievre@PC_00595>          * imach.c: Summary: minor typo
   
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.          * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
         (Module): If the status is missing at the last wave but we know  
         that the person is alive, then we can code his/her status as -2          Author: Nicolas Brouard
         (instead of missing=-1 in earlier versions) and his/her  
         contributions to the likelihood is 1 - Prob of dying from last  2015-11-18  Brouard Nicolas  <brouard@ined.fr>
         health status (= 1-p13= p11+p12 in the easiest case of somebody in  
         the healthy state at last known wave). Version is 0.98          * imach.c: Summary: Start working on projected prevalences
   
 2004-05-20  Brouard Nicolas  <brouard@localhost>  2015-11-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Repository):          * imach.c: Summary: Adding ftolpl parameter
         Agnes added a direct estimation of mortality (without the need of          Author: N Brouard
         computing period prevalence and differential mortality). Thus here  
         is version 0.97a which has been distributed to some people at          We had difficulties to get smoothed confidence intervals. It was due
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of          to the period prevalence which wasn't computed accurately. The inner
         mortality using covariates is not done today. Estimating direct          parameter ftolpl is now an outer parameter of the .imach parameter
         mortality is a very different process because it doesn't need          file after estepm. If ftolpl is small 1.e-4 and estepm too,
         interpolation because it is easy to get the lx from the force of          computation are long.
         the mortality mux in the simplest case as for a Gompertz (log mux  
         = a + b*x . But we have been able to incorporate the new code          * version.h: *** empty log message ***
         within former imach program (0.96d) without deteriorating too much  
         the understanding of the program.          * imach.c: Summary: temporary
   
 2003-06-25    <brouard@BROUARD>  2015-10-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't          * Makefile: *** empty log message ***
         exist so I changed back to asctime which exists.  
         (Module): Version 0.96b          * setup.iss.in: Summary: some new subdirs
   
 2003-06-24    <brouard@BROUARD>          * imach.c: *** empty log message ***
   
         * imach.c (Module): Some bugs corrected for windows. Also, when          * setup.iss.in:
         mle=-1 a template is output in file "or"mypar.txt with the design          Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
         of the covariance matrix to be input.  
   2015-10-24  Brouard Nicolas  <brouard@ined.fr>
 2003-06-25  Brouard Nicolas  <brouard@homebrou>  
           * imach.c: *** empty log message ***
         * imach.c (Repository): Duplicated warning errors corrected.  
         (Repository): Elapsed time after each iteration is now output. It  2015-10-23  Brouard Nicolas  <brouard@ined.fr>
         helps to forecast when convergence will be reached. Elapsed time  
         is stamped in powell.  We created a new html file for the graphs          * imach.c:
         concerning matrix of covariance. It has extension -cov.htm.          Summary: 0.98r3 some clarification for graphs on likelihood contributions
   
 2003-06-23  Brouard Nicolas  <brouard@homebrou>  2015-10-01  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.          * imach.c: Summary: Some new graphs of contribution to likelihood
   
 2003-06-18  Brouard Nicolas  <brouard@homebrou>  2015-09-30  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96          * Makefile:
           Summary: Version read from version.h, itself read with cmake
 2003-06-17  Brouard Nicolas  <brouard@homebrou>  
           * imach.c: Summary: looking at better estimation of the hessian
   
         * imach.c (Repository): Check when date of death was earlier that          Also a better criteria for convergence to the period prevalence And
         current date of interview. It may happen when the death was just          therefore adding the number of years needed to converge. (The
         prior to the death. In this case, dh was negative and likelihood          prevalence in any alive state shold sum to one
         was wrong (infinity). We still send an "Error" but patch by  
         assuming that the date of death was just one stepm after the          * Makefile: *** empty log message ***
         interview.  
         (Repository): Because some people have very long ID (first column)  2015-09-22  Brouard Nicolas  <brouard@ined.fr>
         we changed int to long in num[] and we added a new lvector for  
         memory allocation. But we also truncated to 8 characters (left          * imach.c:
         truncation)          Summary: Adding some overall graph on contribution to likelihood. Might change
   
         (Repository): No more line truncation errors.  2015-09-15  Brouard Nicolas  <brouard@ined.fr>
   
 2003-06-14  Brouard Nicolas  <brouard@homebrou>          * Makefile: *** empty log message ***
   
         * imach.c (Repository): Add of a routine likelione (likelihood          * imach.c: Summary: 0.98r0
         only once) which prints on a text file  
         (ilk) the contributions to the likelihood for each          - Some new graphs like survival functions
         individual/wave.          - Some bugs fixed like model=1+age+V2.
   
 2003-06-13  Brouard Nicolas  <brouard@homebrou>          * ChangeLog, Makefile: Summary: 0.98r0
         * imach.c (Repository): Replace "freqsummary" at a correct  
         place. It differs from routine "prevalence" which may be called          * CMakeLists.txt: Summary: Some tests for setup.iss
         many times. Probs is memory consuming and must be used with  
         parcimony.  2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
 2003-06-17    <brouard@BROUARD>          *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
   
         * timeval.h (Module): Added included file to make use of  2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
         gettimeofday working on win32 with cygwin.  
           *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
 2003-05-16  Brouard Nicolas  <brouard@brouard>  
         * imach.c (Module): Insert of a warning if the delay between two  2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         waves is negative.  
           *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
         * imach.c (Module):  
   2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
 2003-05-03    <brouard@BROUARD>  
           * imach.c (Module): Merging 1.61 to 1.162
         * imach.c: Some cleaning  
   2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
 2003-03-28    <brouard@BROUARD>  
         * imach.c (Module): In version up to 0.92 likelihood was computed          * prevlim.h (Module): 
         as if date of death was unknown. Death was treated as any other  
         health state: the date of the interview describes the actual state  2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
         and not the date of a change in health state. The former idea was  
         to consider that at each interview the state was recorded          * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
         (healthy, disable or death) and IMaCh was corrected; but when we          (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
         introduced the exact date of death then we should have modified  
         the contribution of an exact death to the likelihood. This new  2010-04-29  brouard  <brouard@ined.fr>
         contribution is smaller and very dependent of the step unit  
         stepm. It is no more the probability to die between last interview          * imach.c (Module): Checking covariates for more complex models
         and month of death but the probability to survive from last          than V1+V2. A lot of change to be done. Unstable.
         interview up to one month before death multiplied by the  
         probability to die within a month. Thanks to Chris  2010-04-26  brouard  <brouard@ined.fr>
         Jackson for correcting this bug.  Former versions increased  
         mortality artificially. The bad side is that we add another loop          * imach.c (Module): merging some libgsl code. Fixing computation
           of likelione (using inter/intrapolation if mle = 0) in order to
           get same likelihood as if mle=1.
         which slows down the processing. The difference can be up to 10%          Some cleaning of code and comments added.
   
   2009-10-29  brouard  <brouard@ined.fr>
         lower mortality.  
           * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
   
   2006-06-30  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Clarifications on computing e.j
 2002-05-30    <brouard@BROUARD>  
   2006-04-28  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Yes the sum of survivors was wrong since
           imach-114 because nhstepm was no more computed in the age
           loop. Now we define nhstepma in the age loop.
         *          (Module): In order to speed up (in case of numerous covariates) we
           compute health expectancies (without variances) in a first step
           and then all the health expectancies with variances or standard
           deviation (needs data from the Hessian matrices) which slows the
           computation.
           In the future we should be able to stop the program is only health
         * imach.c (Module): Add correlation matrix of one-step          expectancies and graph are needed without standard deviations.
   
   2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
         probabilities and covariance matrix  
           * imach.iss (Module): 
   
           * imach.c (Module): bugs in evsi + population file added in htm output file
   
   2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): 
   
   2006-03-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): <title> changed, corresponds to .htm file
           name. <head> headers where missing.
   
           * Makefile (Module): 0.98g
   
           * imach.c (Module): Weights can have a decimal point as for
           English (a comma might work with a correct LC_NUMERIC environment,
           otherwise the weight is truncated).
           Modification of warning when the covariates values are not 0 or
           1. 
           Version 0.98g
   
   2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): Comments concerning covariates added
   
           * noreg-setup.iss (Module): Version 0.98f
   
           * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
   
           * imach.c (Module): refinements in the computation of lli if
           status=-2 in order to have more reliable computation if stepm is
           not 1 month. Version 0.98f
   
   2006-03-15  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Bug if status = -2, the loglikelihood was
           computed as likelihood omitting the logarithm. Version O.98e
   
   2006-03-14  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): varevsij Comments added explaining the second
           table of variances if popbased=1 .
           (Module): Covariances of eij, ekl added, graphs fixed, new html link.
           (Module): Function pstamp added
           (Module): Version 0.98d 
   
   2006-03-06  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Variance-covariance wrong links and
           varian-covariance of ej. is needed (Saito).
   
   2006-02-27  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): One freematrix added in mlikeli!
   
   2006-02-26  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Some improvements in processing parameter
           filename with strsep.
   
   2006-02-24  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Memory leaks checks with valgrind and:
           datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
   
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * strsep.c (Module): Inclusion because not in mingw32!!!
   
           * setup.iss.in (Module): IMACHSETUPVERSION added
   
           * noreg-setup.iss (Module): added to cvs tree
   
           * Makefile (Module): IMACHSETUPVERSION added
   
   2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
           * Makefile (Module, Module): Latest Makefile
   
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
           * noreg-setup.iss (Module): ADDED
   
   2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
           * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
   2005-09-30    <lievre@PC_00595>
   
           * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
           that the person is alive, then we can code his/her status as -2
           (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
           health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98 
   
   2004-05-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Repository): 
           Agnes added a direct estimation of mortality (without the need of
           computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
           REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
           mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
           the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
           within former imach program (0.96d) without deteriorating too much
           the understanding of the program. 
   
   2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module): 
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
           which slows down the processing. The difference can be up to 10%
           lower mortality.
   
   2002-05-30    <brouard@BROUARD>
   
           * imach.c (Module): Add correlation matrix of one-step
           probabilities and covariance matrix
   
Removed from v.1.42  
changed lines
  Added in v.1.69

FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>