Diff for /imach/src/ChangeLog between versions 1.50 and 1.69

version 1.50, 2022/04/13 17:52:55 version 1.69, 2024/04/30 10:58:21
Line 1 Line 1
 2022-04-13  Brouard Nicolas  <brouard@brouard.name>  2024-04-30  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c (Module): Adding link to text data files          * (Module): In version 0.99s4, we incorporated the calculation of
           the std error of the proportion of total life expectancy spent in
 2022-04-11  Nicolas Brouard   <brouard@ined.fr>          a specific state Var(e.j/e..) using the formula of Var(X/Y)
           depending only of the variances of X and Y and expectancies.
         * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed  
   2024-04-24  Nicolas Brouard   <brouard@ined.fr>
 2022-04-05  Brouard Nicolas  <brouard@ined.fr>  
           * (Module): This version comes late after having tested
         * imach.c (Module): Fixed covariates (dummy or quantitative)          successfully the praxis C version of Buckhardt.  But Buckardt's
         with missing values have never been allowed but are ERRORS and          version was difficult to read and Gegenfurtner's version had a few
         program quits. Standard deviations of fixed covariates were          typos which made its results less reliable than Buckhardt's
         wrongly computed. Mean and standard deviations of time varying          results.  The most important work consisted in retyping the Brent
         covariates are still not computed.          original PRAXIS program written in Algol W (published with errors,
           ommitting the transposition of matrix V before its QR reduction
 2022-03-17  Brouard Nicolas  <brouard@ined.fr>          from Golub. I used the recent "awe" compiler from Gkynn Webster.
           The awe library had errors, for example in arc tangent function
         * 99r25 Improvements in fixing discrepancies between covariates          which have been fixed.
         missing in result line but in model.  
           The main objective was to get identical results with the three
 *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>          versions: (1) Algol W, (2) Buckhardt'C version as well (3)
         * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett          Gegenfürtner C versions on the various test functions published by
           Brent in 1973 in Algol W.
 *2021-03-08  Nicolas Brouard   <brouard@ined.fr>  
           Also, in order to compare them, the random function had to produce
         * ./ (Module): Fixed bug on result:          the same sequence for the 3 softwares. The random function used in
           imach corresponds to original Brent's random function written in
 *2021-02-20  Nicolas Brouard   <brouard@ined.fr>          Algol W.  Other point, in Algol W, the arrays of dimension n are
           'normal' mathematical arrays starting from 1 to n. But this is a
         * imach.c (Module): Fix bug on quitting after result lines!          real issue in C where, by default, arrays are starting from 0 to
         (Module): Version 0.99r21          n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
           seen that authors while trying to mimick original Brent Algol W
 2021-02-12  Nicolas Brouard   <brouard@ined.fr>          code are hesitating by changing either a loop originally from 1 to
           n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
         * imach.c (Module): The use of a Windows BOM (huge) file is now an error          shifting the index from original X(I) in Algol W to x[i-1] in C.
           But as IMaCh is using, since the beginning, the Numerical Recipes
           functions vector or matrix, I changed Geggenfürtner code to mimick
 2021-02-11  Nicolas  Brouard   <brouard@ined.fr>          the original Algol W arrays. Thus the X(I) is translated in C as
           x[i] which minimizes the errors. The Golub QR algorithm was
         *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.          published in Algol with overflow errors which were reproduced in
           Brent's Algol W code. Buckhardt code fixed these errors which are
 2020-02-22  Brouard Nicolas  <brouard@ined.fr>          much more problematic in C than in Algol W.  Thus Buckhardt code
           seems very safe, but i haven't chosen it for IMaCh because the C
         *  (Module): imach.c Update mle=-3 (for computing Life expectancy          style is horrible and almost unreadable compared to Gegenfürtner
         and life table from the data without any state)          CO code which is very close to Brent's original. Also what makes
           Buckhardt code more difficult to read is, instead of passing the
 2019-05-20  Brouard Nicolas  <brouard@ined.fr>          minimum of parameters in the functions calls, as it is in Algol
           Brent's code or Gegenfürtner's code, the list of parameters is
         * version.h: Summary: version 0.99.r19          high. For example, the flin function LONG REAL PROCEDURE FLIN
           (LONG REAL VALUE L) has only one parameter in Algol W, the
         * imach.c: Summary: Projection syntax simplified          Gegenfürtner flin function had two parameters: static double
         We can now start projections, forward or backward, from the mean date          flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
         of inteviews up to or down to a number of years of projection:          function has 14 parameters which makes the code unreadable and
         prevforecast=1 yearsfproj=15.3 mobil_average=0          useless. Gegenfürtner used a lot of static variables or functions
         or          which I tried to minimize. Also in Gegefürtner, array dimensions
         prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0          were fixed to N. In my adaptation the flin is static double
         or          flin(double l, int j) and the parameter used are global variables.
         prevbackcast=1 yearsbproj=12.3 mobil_average=1  
         or  2023-06-14  Nicolas Brouard   <brouard@ined.fr>
         prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1  
           * imach.c (Module): Testing if conjugate gradient could be quicker
 2019-05-18  Brouard Nicolas  <brouard@ined.fr>          when lot of variables POWELLORIGINCONJUGATE
   
         * imach.c: Summary: doxygen tex bug  2023-05-23  Nicolas Brouard   <brouard@ined.fr>
   
 2019-05-16  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Fixed PROB_r 
   
         * imach.c: Summary: There was some wrong lines added  2023-05-22  Nicolas Brouard   <brouard@ined.fr>
   
 2019-05-09  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): In the ILK....txt file, the number of columns
           before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
         * Makefile, imach.c: *** empty log message ***  
   2023-05-08  Nicolas Brouard   <brouard@ined.fr>
         * ChangeLog: Summary: C=  
           *  (Module): Error V0 when result:. and model 1+age+V1: fixed
         * imach.c: Summary: Some updates  
   2023-04-29  Nicolas Brouard  <brouard@ined.fr>
         * imach.c: Summary: Before ncovmax  
           * imach.c (Module): Inverting the model equation and fixingg bugs
         * version.h: *** empty log message ***          in the drawings
           "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
         * imach.c: Summary: 0.99r18 unlimited number of individuals  
         The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.  2023-04-24  Nicolas Brouard  <brouard@ined.fr>
   
 2018-12-13  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): some bugs in printinggnuplot 
   
         * imach.c: Summary: Bug for young ages (<-30) will be in r17  2022-09-19  Nicolas Brouard   <brouard@ined.fr>
   
 2018-12-05  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Version 0.99r42 needed a newer version of
           Gnuplot. But newer version 0.99r43 should run with the Gnuplot
         * Makefile: Summary: 0.99r16          version 5.0 or 5.1 distributed with IMaCh.
   
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  2022-09-18  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Some bugs fixed          * imach.c (Module): Fixing when a state in the data is 0 or higher
           than lstate+ndeath. Fixing the plot of contribution to Likelihood.
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-16  Nicolas Brouard   <brouard@ined.fr>
         * imach.c:  Summary: Bug for young ages (<-30) will be in r17  
           * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you  Feinuo
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-14  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Some bugs fixed  
           * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
 2018-05-01  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-14  Nicolas Brouard   <brouard@ined.fr>
         * imach.c:  
         Summary: Bug fixed by providing frequencies only for non missing covariates          * imach.c (Module): Version 0.99r39 with colored dummy covariates
           (fixed or time varying), using new last columns of
 2018-04-27  Brouard Nicolas  <brouard@ined.fr>          ILK_parameter.txt file.
   
         * imach.c: Summary: some minor bugs  2022-09-11  Nicolas Brouard   <brouard@ined.fr>
   
 2018-04-21  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Adding timevarying products of any kinds,
           should work before shifting cotvar from ncovcol+nqv columns in
         * README.txt: *** empty log message ***          order to have a correspondance between the column of cotvar and
           the id of column.
         * imach.c: Summary: Some bugs fixed, valgrind tested          (Module): Some cleaning and adding covariates in ILK.txt
   
 2018-04-20  Brouard Nicolas  <brouard@ined.fr>  2022-09-09  Nicolas Brouard   <brouard@ined.fr>
   
         * Makefile, README.txt, setup.iss: Summary: imach 0.99r16          * imach.c (Module): Many improvements for fixing products of fixed
           timevarying as well as fixed * fixed, and test with quantitative
         * imach.c:          covariate.
         Summary: Computing mean and stdeviation of fixed quantitative variables  
   2022-09-04  Nicolas Brouard   <brouard@ined.fr>
 2018-04-19  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Now the easy runs i.e. without result or
         * imach.c: Summary: Some minor bugs fixed          model=1+age only did not work. The defautl combination should be 1
           and not 0 because everything hasn't been tranformed yet.
         * version.h: *** empty log message ***  
   2022-09-02  Nicolas Brouard   <brouard@ined.fr>
 2018-02-27  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Version 0.99r35 because it outputs same results with
         * imach.c: *** empty log message ***          1+age+V1+V1*age for females and 1+age for females only
           (education=1 noweight)
         * imach.c: Summary: Adding second argument for quitting  
   2022-08-31  Nicolas Brouard   <brouard@ined.fr>
 2018-02-21  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
         * Makefile, README.txt, imach.c: Summary: 0.99r15  
         New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c  2022-08-21  Nicolas Brouard   <brouard@ined.fr>
   
 2017-07-20  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Version 0.99r33 A lot of changes in
           reassigning covariates: my first idea was that people will always
         * imach.c: Summary: temporary working          use the first covariate V1 into the model but in fact they are
           producing data with many covariates and can use an equation model
 2017-07-19  Brouard Nicolas  <brouard@ined.fr>          with some of the covariate; it means that in a model V2+V3 instead
           of codtabm(k,Tvaraff[j]) which calculates for combination k, for
         * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)          three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
           the equation model is restricted to two variables only (V2, V3)
 2017-07-17  Brouard Nicolas  <brouard@ined.fr>          and the combination for V2 should be codtabm(k,1) instead of
           (codtabm(k,2), and the code should be
         * imach.c: Summary: BOM files can be read now          codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
           made. All of these should be simplified once a day like we did in
 2017-06-30  Brouard Nicolas  <brouard@ined.fr>          hpxij() for example by using precov[nres] which is computed in
           decoderesult for each nres of each resultline. Loop should be done
         * imach.c: Summary: Graphs improvements          on the equation model globally by distinguishing only product with
           age (which are changing with age) and no more on type of
         * imach.c: Summary: Saito's color          covariates, single dummies, single covariates. 
   
 2017-06-29  Brouard Nicolas  <brouard@ined.fr>  2022-08-06  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Version 0.99r14          *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
   
 2017-06-27  Brouard Nicolas  <brouard@ined.fr>  2022-08-03  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: More documentation on projections          *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
   
         * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)  2022-07-25  Brouard Nicolas  <brouard@brouard.name>
   
         * imach.c: Summary: Some bug with rint          * imach.c (Module): Error cptcovn instead of nsd in bmij (was
           coredumped, revealed by Feiuno, thank you.
 2017-05-24  Brouard Nicolas  <brouard@ined.fr>  
   2022-07-23  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * r29 W and not sqrt(Wald)
 2017-05-23  Brouard Nicolas  <brouard@ined.fr>  
   2022-07-22  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Code into subroutine, cleanings  
           *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
 2017-05-18  Brouard Nicolas  <brouard@ined.fr>  
   2022-06-02  Brouard Nicolas  <brouard@brouard.name>
         * imach.c:  
         Summary: backprojection and confidence intervals of backprevalence          * imach.c (Module): Adding the Wald tests from the log to the main
           htm for better display of the maximum likelihood estimators.
 2017-05-13  Brouard Nicolas  <brouard@ined.fr>  
   2022-05-30  Brouard Nicolas  <brouard@brouard.name>
         * imach.c: Summary: temporary save for backprojection  
           * imach.c: With products of covariates (age or dummies or
         * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)          quantitatives), estimates of parameters were good but when
           estimating variances the positions of newly created covariates
 2017-04-26  Brouard Nicolas  <brouard@ined.fr>          were wrongly assigned and results were wrong. Thank to Feinua_Sun!
   
         * imach.c: Summary: imach 0.99r13 Some bugs fixed  2022-05-24  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Labels in graphs          * imach.c (Module): Some attempts to find a bug of wrong estimates
           of confidencce intervals with product in the equation modelC
 2017-04-24  Brouard Nicolas  <brouard@ined.fr>  
   2022-05-15  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: to save  
           * imach.c (Module):  Some minor improvements
 2017-04-18  Brouard Nicolas  <brouard@ined.fr>  
   2022-04-13  Brouard Nicolas  <brouard@brouard.name>
         * imach.c: *** empty log message ***  
           * imach.c (Module): Adding link to text data files
 2017-04-05  Brouard Nicolas  <brouard@ined.fr>  
   2022-04-11  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1  
           * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
 2017-04-04  Brouard Nicolas  <brouard@ined.fr>  
   2022-04-05  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Gnuplot indexations fixed (humm)  
           * imach.c (Module): Fixed covariates (dummy or quantitative)
         * imach.c:          with missing values have never been allowed but are ERRORS and
         Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3          program quits. Standard deviations of fixed covariates were
           wrongly computed. Mean and standard deviations of time varying
 2017-04-03  Brouard Nicolas  <brouard@ined.fr>          covariates are still not computed.
   
         * imach.c: Summary: Version 0.99r12  2022-03-17  Brouard Nicolas  <brouard@ined.fr>
         Some cleanings, conformed with updated documentation.  
           * 99r25 Improvements in fixing discrepancies between covariates
 2017-03-30  Brouard Nicolas  <brouard@ined.fr>          missing in result line but in model. 
   
         * version.h: *** empty log message ***  *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
           * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
         * version.h: Summary:0.99r11  
   *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
 2017-03-29  Brouard Nicolas  <brouard@ined.fr>  
           * ./ (Module): Fixed bug on result:
         * imach.c: Summary: Temp  
   *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
 2017-03-27  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Fix bug on quitting after result lines!
         * imach.c: Summary: Temporary          (Module): Version 0.99r21
   
 2017-03-08  Brouard Nicolas  <brouard@ined.fr>  2021-02-12  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed          * imach.c (Module): The use of a Windows BOM (huge) file is now an error
   
         * imach.c: Summary: Fixing data parameter line  
   2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
 2016-12-15  Brouard Nicolas  <brouard@ined.fr>  
           *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
         * imach.c: Summary: 0.99 in progress  
   2020-02-22  Brouard Nicolas  <brouard@ined.fr>
 2016-09-15  Brouard Nicolas  <brouard@ined.fr>  
           *  (Module): imach.c Update mle=-3 (for computing Life expectancy
         * imach.c: *** empty log message ***          and life table from the data without any state)
   
         * imach.c: Summary: not working  2019-05-20  Brouard Nicolas  <brouard@ined.fr>
   
 2016-09-08  Brouard Nicolas  <brouard@ined.fr>          * version.h: Summary: version 0.99.r19
   
         * imach.c: Summary: continue          * imach.c: Summary: Projection syntax simplified
           We can now start projections, forward or backward, from the mean date
 2016-09-07  Brouard Nicolas  <brouard@ined.fr>          of inteviews up to or down to a number of years of projection:
           prevforecast=1 yearsfproj=15.3 mobil_average=0
         * imach.c: Summary: Starting values from frequencies          or
           prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
         * imach.c: *** empty log message ***          or
           prevbackcast=1 yearsbproj=12.3 mobil_average=1
 2016-09-02  Brouard Nicolas  <brouard@ined.fr>          or
           prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
         * imach.c: *** empty log message ***  
   2019-05-18  Brouard Nicolas  <brouard@ined.fr>
 2016-08-30  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: doxygen tex bug
         * imach.c: Summary: Fixing a lots  
   2019-05-16  Brouard Nicolas  <brouard@ined.fr>
 2016-08-29  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: There was some wrong lines added
         * imach.c: Summary: gnuplot problem in Back projection to fix  
   2019-05-09  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Better  
           * Makefile, imach.c: *** empty log message ***
 2016-08-26  Brouard Nicolas  <brouard@ined.fr>  
           * ChangeLog: Summary: C=
         * imach.c:  
         Summary: Improvement in Powell output in order to copy and paste          * imach.c: Summary: Some updates
   
         * imach.c: Summary: Starting tests of 0.99          * imach.c: Summary: Before ncovmax
   
         * imach.c: Summary: to valgrind          * version.h: *** empty log message ***
   
 2016-08-25  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: 0.99r18 unlimited number of individuals
           The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
         * imach.c: *** empty log message ***  
   2018-12-13  Brouard Nicolas  <brouard@ined.fr>
 2016-08-23  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Bug for young ages (<-30) will be in r17
         * imach.c: *** empty log message ***  
   2018-12-05  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: not working  
           * Makefile: Summary: 0.99r16
 2016-08-22  Brouard Nicolas  <brouard@ined.fr>  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: not working  
           * imach.c: Summary: Some bugs fixed
         * imach.c: Summary: Not working  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
 2016-07-23  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c:  Summary: Bug for young ages (<-30) will be in r17
         * imach.c: Summary: Completing for func too  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
 2016-07-22  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Some bugs fixed
         * imach.c: Summary: Fixing some arrays, still debugging  
   2018-05-01  Brouard Nicolas  <brouard@ined.fr>
 2016-07-21  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c:
         * imach.c:          Summary: Bug fixed by providing frequencies only for non missing covariates
         Summary: 0.99 working (more or less) for Asian Workshop on multitate methods  
   2018-04-27  Brouard Nicolas  <brouard@ined.fr>
 2016-07-12  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: some minor bugs
         * imach.c: Summary: temp  
   2018-04-21  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: saving but not running  
           * README.txt: *** empty log message ***
 2016-07-01  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Some bugs fixed, valgrind tested
         * imach.c: Summary: Fixes  
   2018-04-20  Brouard Nicolas  <brouard@ined.fr>
 2016-02-19  Brouard Nicolas  <brouard@ined.fr>  
           * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
         * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7  
           * imach.c:
         * setup.iss, Makefile, version.h: *** empty log message ***          Summary: Computing mean and stdeviation of fixed quantitative variables
   
         * imach.c: Summary: temporary  2018-04-19  Brouard Nicolas  <brouard@ined.fr>
   
 2016-02-17  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Some minor bugs fixed
   
         * imach.c: Summary: Probably last 0.98 stable version 0.98r6          * version.h: *** empty log message ***
   
 2016-02-16  Brouard Nicolas  <brouard@ined.fr>  2018-02-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: minor bug          * imach.c: *** empty log message ***
   
         * imach.c: Summary: 0.99r2          * imach.c: Summary: Adding second argument for quitting
   
 2016-02-15  Brouard Nicolas  <brouard@ined.fr>  2018-02-21  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * Makefile, README.txt, imach.c: Summary: 0.99r15
           New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
 2016-02-12  Brouard Nicolas  <brouard@ined.fr>  
   2017-07-20  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.99 Back projections  
           * imach.c: Summary: temporary working
 2015-12-23  Brouard Nicolas  <brouard@ined.fr>  
   2017-07-19  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Experimental backcast  
           * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
 2015-12-18  Brouard Nicolas  <brouard@ined.fr>  
   2017-07-17  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.98r4 Warning and status=-2  
           * imach.c: Summary: BOM files can be read now
         Version 0.98r4 is now:  
          - displaying an error when status is -1, date of interview unknown and date of death known;  2017-06-30  Brouard Nicolas  <brouard@ined.fr>
          - permitting a status -2 when the vital status is unknown at a known date of right truncation.  
         Older changes concerning s=-2, dating from 2005 have been supersed.          * imach.c: Summary: Graphs improvements
   
         * Makefile: *** empty log message ***          * imach.c: Summary: Saito's color
   
 2015-12-16  Brouard Nicolas  <brouard@ined.fr>  2017-06-29  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: *** empty log message ***          * imach.c: Summary: Version 0.99r14
   
         * imach.c: Summary: 0.98r4 working  2017-06-27  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: Summary: linuxrpm added          * imach.c: Summary: More documentation on projections
   
         * Makefile: *** empty log message ***          * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
   
         * imach.c: Summary: temporary not working          * imach.c: Summary: Some bug with rint
   
 2015-12-11  Brouard Nicolas  <brouard@ined.fr>  2017-05-24  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r4          * imach.c: *** empty log message ***
   
 2015-12-08  Brouard Nicolas  <brouard@ined.fr>  2017-05-23  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: *** empty log message ***          * imach.c: Summary: Code into subroutine, cleanings
   
 2015-11-21  Brouard Nicolas  <brouard@ined.fr>  2017-05-18  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile:          * imach.c:
         Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more          Summary: backprojection and confidence intervals of backprevalence
   
         * imach.c: Summary: minor typo  2017-05-13  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional          * imach.c: Summary: temporary save for backprojection
   
         Author: Nicolas Brouard          * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
   
 2015-11-18  Brouard Nicolas  <brouard@ined.fr>  2017-04-26  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Start working on projected prevalences          * imach.c: Summary: imach 0.99r13 Some bugs fixed
   
 2015-11-17  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Labels in graphs
   
         * imach.c: Summary: Adding ftolpl parameter  2017-04-24  Brouard Nicolas  <brouard@ined.fr>
         Author: N Brouard  
           * imach.c: Summary: to save
         We had difficulties to get smoothed confidence intervals. It was due  
         to the period prevalence which wasn't computed accurately. The inner  2017-04-18  Brouard Nicolas  <brouard@ined.fr>
         parameter ftolpl is now an outer parameter of the .imach parameter  
         file after estepm. If ftolpl is small 1.e-4 and estepm too,          * imach.c: *** empty log message ***
         computation are long.  
   2017-04-05  Brouard Nicolas  <brouard@ined.fr>
         * version.h: *** empty log message ***  
           * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
         * imach.c: Summary: temporary  
   2017-04-04  Brouard Nicolas  <brouard@ined.fr>
 2015-10-27  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Gnuplot indexations fixed (humm)
         * Makefile: *** empty log message ***  
           * imach.c:
         * setup.iss.in: Summary: some new subdirs          Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
   
         * imach.c: *** empty log message ***  2017-04-03  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss.in:          * imach.c: Summary: Version 0.99r12
         Summary: Adding gnuplot 5.1 with bin and etc for pango fonts          Some cleanings, conformed with updated documentation.
   
 2015-10-24  Brouard Nicolas  <brouard@ined.fr>  2017-03-30  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * version.h: *** empty log message ***
   
 2015-10-23  Brouard Nicolas  <brouard@ined.fr>          * version.h: Summary:0.99r11
   
         * imach.c:  2017-03-29  Brouard Nicolas  <brouard@ined.fr>
         Summary: 0.98r3 some clarification for graphs on likelihood contributions  
           * imach.c: Summary: Temp
 2015-10-01  Brouard Nicolas  <brouard@ined.fr>  
   2017-03-27  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Some new graphs of contribution to likelihood  
           * imach.c: Summary: Temporary
 2015-09-30  Brouard Nicolas  <brouard@ined.fr>  
   2017-03-08  Brouard Nicolas  <brouard@ined.fr>
         * Makefile:  
         Summary: Version read from version.h, itself read with cmake          * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
   
         * imach.c: Summary: looking at better estimation of the hessian          * imach.c: Summary: Fixing data parameter line
   
         Also a better criteria for convergence to the period prevalence And  2016-12-15  Brouard Nicolas  <brouard@ined.fr>
         therefore adding the number of years needed to converge. (The  
         prevalence in any alive state shold sum to one          * imach.c: Summary: 0.99 in progress
   
         * Makefile: *** empty log message ***  2016-09-15  Brouard Nicolas  <brouard@ined.fr>
   
 2015-09-22  Brouard Nicolas  <brouard@ined.fr>          * imach.c: *** empty log message ***
   
         * imach.c:          * imach.c: Summary: not working
         Summary: Adding some overall graph on contribution to likelihood. Might change  
   2016-09-08  Brouard Nicolas  <brouard@ined.fr>
 2015-09-15  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: continue
         * Makefile: *** empty log message ***  
   2016-09-07  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.98r0  
           * imach.c: Summary: Starting values from frequencies
         - Some new graphs like survival functions  
         - Some bugs fixed like model=1+age+V2.          * imach.c: *** empty log message ***
   
         * ChangeLog, Makefile: Summary: 0.98r0  2016-09-02  Brouard Nicolas  <brouard@ined.fr>
   
         * CMakeLists.txt: Summary: Some tests for setup.iss          * imach.c: *** empty log message ***
   
 2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  2016-08-30  Brouard Nicolas  <brouard@ined.fr>
   
         *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc          * imach.c: Summary: Fixing a lots
   
 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>  2016-08-29  Brouard Nicolas  <brouard@ined.fr>
   
         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.          * imach.c: Summary: gnuplot problem in Back projection to fix
   
 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>          * imach.c: Summary: Better
   
         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)  2016-08-26  Brouard Nicolas  <brouard@ined.fr>
   
 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>          * imach.c:
           Summary: Improvement in Powell output in order to copy and paste
         * imach.c (Module): Merging 1.61 to 1.162  
           * imach.c: Summary: Starting tests of 0.99
 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>  
           * imach.c: Summary: to valgrind
         * prevlim.h (Module):  
   2016-08-25  Brouard Nicolas  <brouard@ined.fr>
 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>  
           * imach.c: *** empty log message ***
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...  
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.  2016-08-23  Brouard Nicolas  <brouard@ined.fr>
   
 2010-04-29  brouard  <brouard@ined.fr>          * imach.c: *** empty log message ***
   
         * imach.c (Module): Checking covariates for more complex models          * imach.c: Summary: not working
         than V1+V2. A lot of change to be done. Unstable.  
   2016-08-22  Brouard Nicolas  <brouard@ined.fr>
 2010-04-26  brouard  <brouard@ined.fr>  
           * imach.c: Summary: not working
         * imach.c (Module): merging some libgsl code. Fixing computation  
         of likelione (using inter/intrapolation if mle = 0) in order to          * imach.c: Summary: Not working
         get same likelihood as if mle=1.  
         Some cleaning of code and comments added.  2016-07-23  Brouard Nicolas  <brouard@ined.fr>
   
 2009-10-29  brouard  <brouard@ined.fr>          * imach.c: Summary: Completing for func too
   
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.  2016-07-22  Brouard Nicolas  <brouard@ined.fr>
   
 2006-06-30  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: Fixing some arrays, still debugging
   
         * imach.c (Module): Clarifications on computing e.j  2016-07-21  Brouard Nicolas  <brouard@ined.fr>
   
 2006-04-28  Brouard Nicolas  <brouard@localhost>          * imach.c:
           Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
         * imach.c (Module): Yes the sum of survivors was wrong since  
         imach-114 because nhstepm was no more computed in the age  2016-07-12  Brouard Nicolas  <brouard@ined.fr>
         loop. Now we define nhstepma in the age loop.  
         (Module): In order to speed up (in case of numerous covariates) we          * imach.c: Summary: temp
         compute health expectancies (without variances) in a first step  
         and then all the health expectancies with variances or standard          * imach.c: Summary: saving but not running
         deviation (needs data from the Hessian matrices) which slows the  
         computation.  2016-07-01  Brouard Nicolas  <brouard@ined.fr>
         In the future we should be able to stop the program is only health  
         expectancies and graph are needed without standard deviations.          * imach.c: Summary: Fixes
   
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  2016-02-19  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.iss (Module):          * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
   
         * imach.c (Module): bugs in evsi + population file added in htm output file          * setup.iss, Makefile, version.h: *** empty log message ***
   
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * imach.c: Summary: temporary
   
         * imach.c (Module):  2016-02-17  Brouard Nicolas  <brouard@ined.fr>
   
 2006-03-20  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: Probably last 0.98 stable version 0.98r6
   
         * imach.c (Module): <title> changed, corresponds to .htm file  2016-02-16  Brouard Nicolas  <brouard@ined.fr>
         name. <head> headers where missing.  
           * imach.c: Summary: minor bug
         * Makefile (Module): 0.98g  
           * imach.c: Summary: 0.99r2
         * imach.c (Module): Weights can have a decimal point as for  
         English (a comma might work with a correct LC_NUMERIC environment,  2016-02-15  Brouard Nicolas  <brouard@ined.fr>
         otherwise the weight is truncated).  
         Modification of warning when the covariates values are not 0 or          * imach.c: *** empty log message ***
         1.  
         Version 0.98g  2016-02-12  Brouard Nicolas  <brouard@ined.fr>
   
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * imach.c: Summary: 0.99 Back projections
   
         * imach.c (Module): Comments concerning covariates added  2015-12-23  Brouard Nicolas  <brouard@ined.fr>
   
         * noreg-setup.iss (Module): Version 0.98f          * imach.c: Summary: Experimental backcast
   
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup  2015-12-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): refinements in the computation of lli if          * imach.c: Summary: 0.98r4 Warning and status=-2
         status=-2 in order to have more reliable computation if stepm is  
         not 1 month. Version 0.98f          Version 0.98r4 is now:
            - displaying an error when status is -1, date of interview unknown and date of death known;
 2006-03-15  Brouard Nicolas  <brouard@localhost>           - permitting a status -2 when the vital status is unknown at a known date of right truncation.
           Older changes concerning s=-2, dating from 2005 have been supersed.
         * imach.c (Module): Bug if status = -2, the loglikelihood was  
         computed as likelihood omitting the logarithm. Version O.98e          * Makefile: *** empty log message ***
   
 2006-03-14  Brouard Nicolas  <brouard@localhost>  2015-12-16  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): varevsij Comments added explaining the second          * Makefile: *** empty log message ***
         table of variances if popbased=1 .  
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.          * imach.c: Summary: 0.98r4 working
         (Module): Function pstamp added  
         (Module): Version 0.98d          * Makefile: Summary: linuxrpm added
   
 2006-03-06  Brouard Nicolas  <brouard@localhost>          * Makefile: *** empty log message ***
   
         * imach.c (Module): Variance-covariance wrong links and          * imach.c: Summary: temporary not working
         varian-covariance of ej. is needed (Saito).  
   2015-12-11  Brouard Nicolas  <brouard@ined.fr>
 2006-02-27  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: 0.98r4
         * imach.c (Module): One freematrix added in mlikeli!  
   2015-12-08  Brouard Nicolas  <brouard@ined.fr>
 2006-02-26  Brouard Nicolas  <brouard@localhost>  
           * Makefile: *** empty log message ***
         * imach.c (Module): Some improvements in processing parameter  
         filename with strsep.  2015-11-21  Brouard Nicolas  <brouard@ined.fr>
   
 2006-02-24  Brouard Nicolas  <brouard@localhost>          * Makefile:
           Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
         * imach.c (Module): Memory leaks checks with valgrind and:  
         datafile was not closed, some imatrix were not freed and on matrix          * imach.c: Summary: minor typo
         allocation too.  
           * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           Author: Nicolas Brouard
         * strsep.c (Module): Inclusion because not in mingw32!!!  
   2015-11-18  Brouard Nicolas  <brouard@ined.fr>
         * setup.iss.in (Module): IMACHSETUPVERSION added  
           * imach.c: Summary: Start working on projected prevalences
         * noreg-setup.iss (Module): added to cvs tree  
   2015-11-17  Brouard Nicolas  <brouard@ined.fr>
         * Makefile (Module): IMACHSETUPVERSION added  
           * imach.c: Summary: Adding ftolpl parameter
 2006-01-30  BROUARD Nicolas  <brouard@localhost>          Author: N Brouard
   
         * Makefile (Module, Module): Latest Makefile          We had difficulties to get smoothed confidence intervals. It was due
           to the period prevalence which wasn't computed accurately. The inner
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe          parameter ftolpl is now an outer parameter of the .imach parameter
           file after estepm. If ftolpl is small 1.e-4 and estepm too,
 2006-01-27  BROUARD Nicolas  <brouard@localhost>          computation are long.
   
         * noreg-setup.iss (Module): ADDED          * version.h: *** empty log message ***
   
 2006-01-24  BROUARD Nicolas  <brouard@localhost>          * imach.c: Summary: temporary
   
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.  2015-10-27  Brouard Nicolas  <brouard@ined.fr>
   
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>          * Makefile: *** empty log message ***
   
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg          * setup.iss.in: Summary: some new subdirs
   
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X          * imach.c: *** empty log message ***
   
 2005-09-30    <lievre@PC_00595>          * setup.iss.in:
           Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.  
         (Module): If the status is missing at the last wave but we know  2015-10-24  Brouard Nicolas  <brouard@ined.fr>
         that the person is alive, then we can code his/her status as -2  
         (instead of missing=-1 in earlier versions) and his/her          * imach.c: *** empty log message ***
         contributions to the likelihood is 1 - Prob of dying from last  
         health status (= 1-p13= p11+p12 in the easiest case of somebody in  2015-10-23  Brouard Nicolas  <brouard@ined.fr>
         the healthy state at last known wave). Version is 0.98  
           * imach.c:
 2004-05-20  Brouard Nicolas  <brouard@localhost>          Summary: 0.98r3 some clarification for graphs on likelihood contributions
   
         * imach.c (Repository):  2015-10-01  Brouard Nicolas  <brouard@ined.fr>
         Agnes added a direct estimation of mortality (without the need of  
         computing period prevalence and differential mortality). Thus here          * imach.c: Summary: Some new graphs of contribution to likelihood
         is version 0.97a which has been distributed to some people at  
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of  2015-09-30  Brouard Nicolas  <brouard@ined.fr>
         mortality using covariates is not done today. Estimating direct  
         mortality is a very different process because it doesn't need          * Makefile:
         interpolation because it is easy to get the lx from the force of          Summary: Version read from version.h, itself read with cmake
         the mortality mux in the simplest case as for a Gompertz (log mux  
         = a + b*x . But we have been able to incorporate the new code          * imach.c: Summary: looking at better estimation of the hessian
         within former imach program (0.96d) without deteriorating too much  
         the understanding of the program.          Also a better criteria for convergence to the period prevalence And
           therefore adding the number of years needed to converge. (The
 2003-06-25    <brouard@BROUARD>          prevalence in any alive state shold sum to one
   
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't          * Makefile: *** empty log message ***
         exist so I changed back to asctime which exists.  
         (Module): Version 0.96b  2015-09-22  Brouard Nicolas  <brouard@ined.fr>
   
 2003-06-24    <brouard@BROUARD>          * imach.c:
           Summary: Adding some overall graph on contribution to likelihood. Might change
         * imach.c (Module): Some bugs corrected for windows. Also, when  
         mle=-1 a template is output in file "or"mypar.txt with the design  2015-09-15  Brouard Nicolas  <brouard@ined.fr>
         of the covariance matrix to be input.  
           * Makefile: *** empty log message ***
 2003-06-25  Brouard Nicolas  <brouard@homebrou>  
           * imach.c: Summary: 0.98r0
         * imach.c (Repository): Duplicated warning errors corrected.  
         (Repository): Elapsed time after each iteration is now output. It          - Some new graphs like survival functions
         helps to forecast when convergence will be reached. Elapsed time          - Some bugs fixed like model=1+age+V2.
         is stamped in powell.  We created a new html file for the graphs  
         concerning matrix of covariance. It has extension -cov.htm.          * ChangeLog, Makefile: Summary: 0.98r0
   
 2003-06-23  Brouard Nicolas  <brouard@homebrou>          * CMakeLists.txt: Summary: Some tests for setup.iss
   
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.  2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
 2003-06-18  Brouard Nicolas  <brouard@homebrou>          *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
   
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96  2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
   
 2003-06-17  Brouard Nicolas  <brouard@homebrou>          *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
   
   2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         * imach.c (Repository): Check when date of death was earlier that  
         current date of interview. It may happen when the death was just          *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
         prior to the death. In this case, dh was negative and likelihood  
         was wrong (infinity). We still send an "Error" but patch by  2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
         assuming that the date of death was just one stepm after the  
         interview.          * imach.c (Module): Merging 1.61 to 1.162
         (Repository): Because some people have very long ID (first column)  
         we changed int to long in num[] and we added a new lvector for  2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
         memory allocation. But we also truncated to 8 characters (left  
         truncation)          * prevlim.h (Module): 
   
         (Repository): No more line truncation errors.  2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
   
 2003-06-14  Brouard Nicolas  <brouard@homebrou>          * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
           (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
         * imach.c (Repository): Add of a routine likelione (likelihood  
         only once) which prints on a text file  2010-04-29  brouard  <brouard@ined.fr>
         (ilk) the contributions to the likelihood for each  
         individual/wave.          * imach.c (Module): Checking covariates for more complex models
           than V1+V2. A lot of change to be done. Unstable.
 2003-06-13  Brouard Nicolas  <brouard@homebrou>  
         * imach.c (Repository): Replace "freqsummary" at a correct  2010-04-26  brouard  <brouard@ined.fr>
         place. It differs from routine "prevalence" which may be called  
         many times. Probs is memory consuming and must be used with          * imach.c (Module): merging some libgsl code. Fixing computation
         parcimony.          of likelione (using inter/intrapolation if mle = 0) in order to
           get same likelihood as if mle=1.
 2003-06-17    <brouard@BROUARD>          Some cleaning of code and comments added.
   
         * timeval.h (Module): Added included file to make use of  2009-10-29  brouard  <brouard@ined.fr>
         gettimeofday working on win32 with cygwin.  
           * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
 2003-05-16  Brouard Nicolas  <brouard@brouard>  
         * imach.c (Module): Insert of a warning if the delay between two  2006-06-30  Brouard Nicolas  <brouard@localhost>
         waves is negative.  
           * imach.c (Module): Clarifications on computing e.j
         * imach.c (Module):  
   2006-04-28  Brouard Nicolas  <brouard@localhost>
 2003-05-03    <brouard@BROUARD>  
           * imach.c (Module): Yes the sum of survivors was wrong since
         * imach.c: Some cleaning          imach-114 because nhstepm was no more computed in the age
           loop. Now we define nhstepma in the age loop.
 2003-03-28    <brouard@BROUARD>          (Module): In order to speed up (in case of numerous covariates) we
         * imach.c (Module): In version up to 0.92 likelihood was computed          compute health expectancies (without variances) in a first step
         as if date of death was unknown. Death was treated as any other          and then all the health expectancies with variances or standard
         health state: the date of the interview describes the actual state          deviation (needs data from the Hessian matrices) which slows the
         and not the date of a change in health state. The former idea was          computation.
         to consider that at each interview the state was recorded          In the future we should be able to stop the program is only health
         (healthy, disable or death) and IMaCh was corrected; but when we          expectancies and graph are needed without standard deviations.
         introduced the exact date of death then we should have modified  
         the contribution of an exact death to the likelihood. This new  2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
         contribution is smaller and very dependent of the step unit  
         stepm. It is no more the probability to die between last interview          * imach.iss (Module): 
         and month of death but the probability to survive from last  
         interview up to one month before death multiplied by the          * imach.c (Module): bugs in evsi + population file added in htm output file
         probability to die within a month. Thanks to Chris  
         Jackson for correcting this bug.  Former versions increased  2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
         mortality artificially. The bad side is that we add another loop  
         which slows down the processing. The difference can be up to 10%          * imach.c (Module): 
         lower mortality.  
   2006-03-20  Brouard Nicolas  <brouard@localhost>
 2002-05-30    <brouard@BROUARD>  
         *          * imach.c (Module): <title> changed, corresponds to .htm file
         * imach.c (Module): Add correlation matrix of one-step          name. <head> headers where missing.
         probabilities and covariance matrix  
           * Makefile (Module): 0.98g
   
           * imach.c (Module): Weights can have a decimal point as for
           English (a comma might work with a correct LC_NUMERIC environment,
           otherwise the weight is truncated).
           Modification of warning when the covariates values are not 0 or
           1. 
           Version 0.98g
   
   2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): Comments concerning covariates added
   
           * noreg-setup.iss (Module): Version 0.98f
   
           * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
   
           * imach.c (Module): refinements in the computation of lli if
           status=-2 in order to have more reliable computation if stepm is
           not 1 month. Version 0.98f
   
   2006-03-15  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Bug if status = -2, the loglikelihood was
           computed as likelihood omitting the logarithm. Version O.98e
   
   2006-03-14  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): varevsij Comments added explaining the second
           table of variances if popbased=1 .
           (Module): Covariances of eij, ekl added, graphs fixed, new html link.
           (Module): Function pstamp added
           (Module): Version 0.98d 
   
   2006-03-06  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Variance-covariance wrong links and
           varian-covariance of ej. is needed (Saito).
   
   2006-02-27  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): One freematrix added in mlikeli!
   
   2006-02-26  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Some improvements in processing parameter
           filename with strsep.
   
   2006-02-24  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Memory leaks checks with valgrind and:
           datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
   
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * strsep.c (Module): Inclusion because not in mingw32!!!
   
           * setup.iss.in (Module): IMACHSETUPVERSION added
   
           * noreg-setup.iss (Module): added to cvs tree
   
           * Makefile (Module): IMACHSETUPVERSION added
   
   2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
           * Makefile (Module, Module): Latest Makefile
   
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
           * noreg-setup.iss (Module): ADDED
   
   2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
           * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
   2005-09-30    <lievre@PC_00595>
   
           * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
           that the person is alive, then we can code his/her status as -2
           (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
           health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98 
   
   2004-05-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Repository): 
           Agnes added a direct estimation of mortality (without the need of
           computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
           REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
           mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
           the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
           within former imach program (0.96d) without deteriorating too much
           the understanding of the program. 
   
   2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module): 
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
           which slows down the processing. The difference can be up to 10%
           lower mortality.
   
   2002-05-30    <brouard@BROUARD>
   
           * imach.c (Module): Add correlation matrix of one-step
           probabilities and covariance matrix
   

Removed from v.1.50  
changed lines
  Added in v.1.69


FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>