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version 1.7, 2003/06/17 20:18:16
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version 1.47, 2022/03/17 08:58:13
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Line 1
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Line 1
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2022-03-17 Brouard Nicolas <brouard@ined.fr >
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* 99r25 Improvements in fixing discrepancies between covariates
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missing in result line but in model.
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*Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
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* imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
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*2021-03-08 Nicolas Brouard <brouard@ined.fr>
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* ./ (Module): Fixed bug on result:
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*2021-02-20 Nicolas Brouard <brouard@ined.fr>
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* imach.c (Module): Fix bug on quitting after result lines!
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(Module): Version 0.99r21
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2021-02-12 Nicolas Brouard <brouard@ined.fr>
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* imach.c (Module): The use of a Windows BOM (huge) file is now an error
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2021-02-11 Nicolas Brouard <brouard@ined.fr>
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* (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
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2020-02-22 Brouard Nicolas <brouard@ined.fr>
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* (Module): imach.c Update mle=-3 (for computing Life expectancy
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and life table from the data without any state)
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2019-05-20 Brouard Nicolas <brouard@ined.fr>
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* version.h: Summary: version 0.99.r19
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* imach.c: Summary: Projection syntax simplified
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We can now start projections, forward or backward, from the mean date
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of inteviews up to or down to a number of years of projection:
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prevforecast=1 yearsfproj=15.3 mobil_average=0
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or
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prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
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or
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prevbackcast=1 yearsbproj=12.3 mobil_average=1
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or
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prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
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2019-05-18 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: doxygen tex bug
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2019-05-16 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: There was some wrong lines added
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2019-05-09 Brouard Nicolas <brouard@ined.fr>
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* Makefile, imach.c: *** empty log message ***
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* ChangeLog: Summary: C=
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* imach.c: Summary: Some updates
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* imach.c: Summary: Before ncovmax
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* version.h: *** empty log message ***
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* imach.c: Summary: 0.99r18 unlimited number of individuals
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The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
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2018-12-13 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Bug for young ages (<-30) will be in r17
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2018-12-05 Brouard Nicolas <brouard@ined.fr>
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* Makefile: Summary: 0.99r16
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2018-05-02 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Some bugs fixed
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2018-05-02 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Bug for young ages (<-30) will be in r17
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2018-05-02 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Some bugs fixed
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2018-05-01 Brouard Nicolas <brouard@ined.fr>
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* imach.c:
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Summary: Bug fixed by providing frequencies only for non missing covariates
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2018-04-27 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: some minor bugs
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2018-04-21 Brouard Nicolas <brouard@ined.fr>
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* README.txt: *** empty log message ***
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* imach.c: Summary: Some bugs fixed, valgrind tested
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2018-04-20 Brouard Nicolas <brouard@ined.fr>
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* Makefile, README.txt, setup.iss: Summary: imach 0.99r16
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* imach.c:
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Summary: Computing mean and stdeviation of fixed quantitative variables
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2018-04-19 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Some minor bugs fixed
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* version.h: *** empty log message ***
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2018-02-27 Brouard Nicolas <brouard@ined.fr>
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* imach.c: *** empty log message ***
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* imach.c: Summary: Adding second argument for quitting
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2018-02-21 Brouard Nicolas <brouard@ined.fr>
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* Makefile, README.txt, imach.c: Summary: 0.99r15
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New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
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2017-07-20 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: temporary working
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2017-07-19 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
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2017-07-17 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: BOM files can be read now
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2017-06-30 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Graphs improvements
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* imach.c: Summary: Saito's color
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2017-06-29 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Version 0.99r14
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2017-06-27 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: More documentation on projections
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* imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
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* imach.c: Summary: Some bug with rint
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2017-05-24 Brouard Nicolas <brouard@ined.fr>
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* imach.c: *** empty log message ***
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2017-05-23 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Code into subroutine, cleanings
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2017-05-18 Brouard Nicolas <brouard@ined.fr>
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* imach.c:
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Summary: backprojection and confidence intervals of backprevalence
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2017-05-13 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: temporary save for backprojection
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* imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
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2017-04-26 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: imach 0.99r13 Some bugs fixed
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* imach.c: Summary: Labels in graphs
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2017-04-24 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: to save
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2017-04-18 Brouard Nicolas <brouard@ined.fr>
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* imach.c: *** empty log message ***
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2017-04-05 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
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2017-04-04 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Gnuplot indexations fixed (humm)
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* imach.c:
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Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
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2017-04-03 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Version 0.99r12
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Some cleanings, conformed with updated documentation.
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2017-03-30 Brouard Nicolas <brouard@ined.fr>
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* version.h: *** empty log message ***
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* version.h: Summary:0.99r11
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2017-03-29 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Temp
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2017-03-27 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Temporary
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2017-03-08 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
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* imach.c: Summary: Fixing data parameter line
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2016-12-15 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: 0.99 in progress
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2016-09-15 Brouard Nicolas <brouard@ined.fr>
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* imach.c: *** empty log message ***
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* imach.c: Summary: not working
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2016-09-08 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: continue
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2016-09-07 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Starting values from frequencies
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* imach.c: *** empty log message ***
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2016-09-02 Brouard Nicolas <brouard@ined.fr>
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* imach.c: *** empty log message ***
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2016-08-30 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Fixing a lots
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2016-08-29 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: gnuplot problem in Back projection to fix
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* imach.c: Summary: Better
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2016-08-26 Brouard Nicolas <brouard@ined.fr>
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* imach.c:
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Summary: Improvement in Powell output in order to copy and paste
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* imach.c: Summary: Starting tests of 0.99
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* imach.c: Summary: to valgrind
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2016-08-25 Brouard Nicolas <brouard@ined.fr>
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* imach.c: *** empty log message ***
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2016-08-23 Brouard Nicolas <brouard@ined.fr>
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* imach.c: *** empty log message ***
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* imach.c: Summary: not working
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2016-08-22 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: not working
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* imach.c: Summary: Not working
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2016-07-23 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Completing for func too
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2016-07-22 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Fixing some arrays, still debugging
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2016-07-21 Brouard Nicolas <brouard@ined.fr>
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* imach.c:
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Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
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2016-07-12 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: temp
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* imach.c: Summary: saving but not running
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2016-07-01 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Fixes
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2016-02-19 Brouard Nicolas <brouard@ined.fr>
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* imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
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* setup.iss, Makefile, version.h: *** empty log message ***
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* imach.c: Summary: temporary
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2016-02-17 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Probably last 0.98 stable version 0.98r6
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2016-02-16 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: minor bug
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* imach.c: Summary: 0.99r2
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2016-02-15 Brouard Nicolas <brouard@ined.fr>
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* imach.c: *** empty log message ***
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2016-02-12 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: 0.99 Back projections
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2015-12-23 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Experimental backcast
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2015-12-18 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: 0.98r4 Warning and status=-2
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Version 0.98r4 is now:
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- displaying an error when status is -1, date of interview unknown and date of death known;
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- permitting a status -2 when the vital status is unknown at a known date of right truncation.
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Older changes concerning s=-2, dating from 2005 have been supersed.
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* Makefile: *** empty log message ***
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2015-12-16 Brouard Nicolas <brouard@ined.fr>
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* Makefile: *** empty log message ***
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* imach.c: Summary: 0.98r4 working
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* Makefile: Summary: linuxrpm added
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* Makefile: *** empty log message ***
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* imach.c: Summary: temporary not working
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2015-12-11 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: 0.98r4
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2015-12-08 Brouard Nicolas <brouard@ined.fr>
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* Makefile: *** empty log message ***
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2015-11-21 Brouard Nicolas <brouard@ined.fr>
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* Makefile:
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Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
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* imach.c: Summary: minor typo
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* imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
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Author: Nicolas Brouard
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2015-11-18 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Start working on projected prevalences
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2015-11-17 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Adding ftolpl parameter
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Author: N Brouard
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We had difficulties to get smoothed confidence intervals. It was due
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to the period prevalence which wasn't computed accurately. The inner
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parameter ftolpl is now an outer parameter of the .imach parameter
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file after estepm. If ftolpl is small 1.e-4 and estepm too,
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computation are long.
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* version.h: *** empty log message ***
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* imach.c: Summary: temporary
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2015-10-27 Brouard Nicolas <brouard@ined.fr>
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* Makefile: *** empty log message ***
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* setup.iss.in: Summary: some new subdirs
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* imach.c: *** empty log message ***
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* setup.iss.in:
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Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
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2015-10-24 Brouard Nicolas <brouard@ined.fr>
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* imach.c: *** empty log message ***
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2015-10-23 Brouard Nicolas <brouard@ined.fr>
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* imach.c:
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Summary: 0.98r3 some clarification for graphs on likelihood contributions
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2015-10-01 Brouard Nicolas <brouard@ined.fr>
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* imach.c: Summary: Some new graphs of contribution to likelihood
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2015-09-30 Brouard Nicolas <brouard@ined.fr>
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* Makefile:
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Summary: Version read from version.h, itself read with cmake
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* imach.c: Summary: looking at better estimation of the hessian
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Also a better criteria for convergence to the period prevalence And
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therefore adding the number of years needed to converge. (The
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prevalence in any alive state shold sum to one
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* Makefile: *** empty log message ***
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2015-09-22 Brouard Nicolas <brouard@ined.fr>
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* imach.c:
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Summary: Adding some overall graph on contribution to likelihood. Might change
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2015-09-15 Brouard Nicolas <brouard@ined.fr>
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* Makefile: *** empty log message ***
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* imach.c: Summary: 0.98r0
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- Some new graphs like survival functions
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- Some bugs fixed like model=1+age+V2.
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* ChangeLog, Makefile: Summary: 0.98r0
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* CMakeLists.txt: Summary: Some tests for setup.iss
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2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
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* (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
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2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
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* (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
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2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
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* (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
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2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
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* imach.c (Module): Merging 1.61 to 1.162
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2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
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* prevlim.h (Module):
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2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
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* imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
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(Module): Version 0.98nR Running ok, but output format still only works for three covariates.
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2010-04-29 brouard <brouard@ined.fr>
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* imach.c (Module): Checking covariates for more complex models
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than V1+V2. A lot of change to be done. Unstable.
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2010-04-26 brouard <brouard@ined.fr>
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* imach.c (Module): merging some libgsl code. Fixing computation
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of likelione (using inter/intrapolation if mle = 0) in order to
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get same likelihood as if mle=1.
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Some cleaning of code and comments added.
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2009-10-29 brouard <brouard@ined.fr>
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* imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
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2006-06-30 Brouard Nicolas <brouard@localhost>
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* imach.c (Module): Clarifications on computing e.j
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2006-04-28 Brouard Nicolas <brouard@localhost>
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* imach.c (Module): Yes the sum of survivors was wrong since
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imach-114 because nhstepm was no more computed in the age
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loop. Now we define nhstepma in the age loop.
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(Module): In order to speed up (in case of numerous covariates) we
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compute health expectancies (without variances) in a first step
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and then all the health expectancies with variances or standard
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deviation (needs data from the Hessian matrices) which slows the
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computation.
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In the future we should be able to stop the program is only health
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expectancies and graph are needed without standard deviations.
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2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
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* imach.iss (Module):
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* imach.c (Module): bugs in evsi + population file added in htm output file
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2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
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* imach.c (Module):
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2006-03-20 Brouard Nicolas <brouard@localhost>
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* imach.c (Module): <title> changed, corresponds to .htm file
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name. <head> headers where missing.
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* Makefile (Module): 0.98g
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* imach.c (Module): Weights can have a decimal point as for
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English (a comma might work with a correct LC_NUMERIC environment,
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otherwise the weight is truncated).
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Modification of warning when the covariates values are not 0 or
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1.
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Version 0.98g
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2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
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* imach.c (Module): Comments concerning covariates added
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* noreg-setup.iss (Module): Version 0.98f
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* Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
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* imach.c (Module): refinements in the computation of lli if
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status=-2 in order to have more reliable computation if stepm is
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not 1 month. Version 0.98f
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2006-03-15 Brouard Nicolas <brouard@localhost>
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* imach.c (Module): Bug if status = -2, the loglikelihood was
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computed as likelihood omitting the logarithm. Version O.98e
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2006-03-14 Brouard Nicolas <brouard@localhost>
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* imach.c (Module): varevsij Comments added explaining the second
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table of variances if popbased=1 .
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(Module): Covariances of eij, ekl added, graphs fixed, new html link.
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(Module): Function pstamp added
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(Module): Version 0.98d
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2006-03-06 Brouard Nicolas <brouard@localhost>
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* imach.c (Module): Variance-covariance wrong links and
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varian-covariance of ej. is needed (Saito).
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2006-02-27 Brouard Nicolas <brouard@localhost>
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* imach.c (Module): One freematrix added in mlikeli!
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2006-02-26 Brouard Nicolas <brouard@localhost>
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* imach.c (Module): Some improvements in processing parameter
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filename with strsep.
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2006-02-24 Brouard Nicolas <brouard@localhost>
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* imach.c (Module): Memory leaks checks with valgrind and:
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datafile was not closed, some imatrix were not freed and on matrix
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allocation too.
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2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
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* strsep.c (Module): Inclusion because not in mingw32!!!
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* setup.iss.in (Module): IMACHSETUPVERSION added
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* noreg-setup.iss (Module): added to cvs tree
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* Makefile (Module): IMACHSETUPVERSION added
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2006-01-30 BROUARD Nicolas <brouard@localhost>
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* Makefile (Module, Module): Latest Makefile
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* imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
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2006-01-27 BROUARD Nicolas <brouard@localhost>
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* noreg-setup.iss (Module): ADDED
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2006-01-24 BROUARD Nicolas <brouard@localhost>
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* imach.c (Module): Comments (lines starting with a #) are allowed in data.
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2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
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* Makefile (Module): Added Imach98.pmsp and howto crete a dmg
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* createdmg.sh (Module): Creates a dmg disk for MaC OS/X
|
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2005-09-30 <lievre@PC_00595>
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* imach.c (Module): sump fixed, loop imx fixed, and simplifications.
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| |
(Module): If the status is missing at the last wave but we know
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| |
that the person is alive, then we can code his/her status as -2
|
| |
(instead of missing=-1 in earlier versions) and his/her
|
| |
contributions to the likelihood is 1 - Prob of dying from last
|
| |
health status (= 1-p13= p11+p12 in the easiest case of somebody in
|
| |
the healthy state at last known wave). Version is 0.98
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| |
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2004-05-20 Brouard Nicolas <brouard@localhost>
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| |
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| |
* imach.c (Repository):
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| |
Agnes added a direct estimation of mortality (without the need of
|
| |
computing period prevalence and differential mortality). Thus here
|
| |
is version 0.97a which has been distributed to some people at
|
| |
REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
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| |
mortality using covariates is not done today. Estimating direct
|
| |
mortality is a very different process because it doesn't need
|
| |
interpolation because it is easy to get the lx from the force of
|
| |
the mortality mux in the simplest case as for a Gompertz (log mux
|
| |
= a + b*x . But we have been able to incorporate the new code
|
| |
within former imach program (0.96d) without deteriorating too much
|
| |
the understanding of the program.
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| |
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| |
2003-06-25 <brouard@BROUARD>
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| |
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| |
* imach.c (Module): On windows (cygwin) function asctime_r doesn't
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| |
exist so I changed back to asctime which exists.
|
| |
(Module): Version 0.96b
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| |
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| |
2003-06-24 <brouard@BROUARD>
|
| |
|
| |
* imach.c (Module): Some bugs corrected for windows. Also, when
|
| |
mle=-1 a template is output in file "or"mypar.txt with the design
|
| |
of the covariance matrix to be input.
|
| |
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| |
2003-06-25 Brouard Nicolas <brouard@homebrou>
|
| |
|
| |
* imach.c (Repository): Duplicated warning errors corrected.
|
| |
(Repository): Elapsed time after each iteration is now output. It
|
| |
helps to forecast when convergence will be reached. Elapsed time
|
| |
is stamped in powell. We created a new html file for the graphs
|
| |
concerning matrix of covariance. It has extension -cov.htm.
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| |
|
| |
2003-06-23 Brouard Nicolas <brouard@homebrou>
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| |
|
| |
* imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
|
| |
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| |
2003-06-18 Brouard Nicolas <brouard@homebrou>
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| |
|
| |
* imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
|
| |
|
| 2003-06-17 Brouard Nicolas <brouard@homebrou>
|
2003-06-17 Brouard Nicolas <brouard@homebrou>
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Line 58
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Line 723
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| probability to die within a month. Thanks to Chris
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probability to die within a month. Thanks to Chris
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| Jackson for correcting this bug. Former versions increased
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Jackson for correcting this bug. Former versions increased
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| mortality artificially. The bad side is that we add another loop
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mortality artificially. The bad side is that we add another loop
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| which slows down the processing. The difference can be up to 10%
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which slows down the processing. The difference can be up to 10%
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| lower mortality.
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lower mortality.
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| 2002-05-30 <brouard@BROUARD>
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2002-05-30 <brouard@BROUARD>
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| *
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*
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| * imach.c (Module): Add correlation matrix of one-step
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* imach.c (Module): Add correlation matrix of one-step
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| probabilities and covariance matrix
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probabilities and covariance matrix
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