[BACK]Return to ChangeLog CVS log [TXT] [DIR] Up to [Local Repository] / imach / src

Diff for /imach/src/ChangeLog between versions 1.40 and 1.70

version 1.40, 2020/02/22 20:59:15 version 1.70, 2024/05/12 20:28:58
Line 1 Line 1
 2020-02-22  Brouard Nicolas  <brouard@brouard.name>  2024-05-12  Nicolas Brouard   <brouard@ined.fr>
   
         *  (Module): imach.c Update mle=-3 (for computing Life expectancy          * imach.c Version 0.99s5 In fact, the covariance of total life
         and life table from the data without any state)          expectancy e.. with a partial life expectancy e.j is high,
           therefore the complete matrix of variance covariance has to be
 2019-05-20  Brouard Nicolas  <brouard@brouard.name>          included in the formula of the standard error of the proportion of
           total life expectancy spent in a specific state:
         * version.h: Summary: version 0.99.r19          var(X/Y)=mu_x^2/mu_y^2*(sigma_x^2/mu_x^2 -2
           sigma_xy/mu_x/mu_y+sigma^2/mu_y^2).  Also an error with mle=-3
         * imach.c: Summary: Projection syntax simplified          made the program core dump. It is fixed in this version.
         We can now start projections, forward or backward, from the mean date  
         of inteviews up to or down to a number of years of projection:  2024-04-30  Nicolas Brouard   <brouard@ined.fr>
         prevforecast=1 yearsfproj=15.3 mobil_average=0  
         or          * (Module): In version 0.99s4, we incorporated the calculation of
         prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0          the std error of the proportion of total life expectancy spent in
         or          a specific state Var(e.j/e..) using the formula of Var(X/Y)
         prevbackcast=1 yearsbproj=12.3 mobil_average=1          depending only of the variances of X and Y and expectancies.
         or  
         prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1  2024-04-24  Nicolas Brouard   <brouard@ined.fr>
   
 2019-05-18  Brouard Nicolas  <brouard@brouard.name>          * (Module): This version comes late after having tested
           successfully the praxis C version of Buckhardt.  But Buckardt's
         * imach.c: Summary: doxygen tex bug          version was difficult to read and Gegenfurtner's version had a few
           typos which made its results less reliable than Buckhardt's
 2019-05-16  Brouard Nicolas  <brouard@brouard.name>          results.  The most important work consisted in retyping the Brent
           original PRAXIS program written in Algol W (published with errors,
         * imach.c: Summary: There was some wrong lines added          ommitting the transposition of matrix V before its QR reduction
           from Golub. I used the recent "awe" compiler from Gkynn Webster.
 2019-05-09  Brouard Nicolas  <brouard@brouard.name>          The awe library had errors, for example in arc tangent function
           which have been fixed.
         * Makefile, imach.c: *** empty log message ***  
           The main objective was to get identical results with the three
         * ChangeLog: Summary: C=          versions: (1) Algol W, (2) Buckhardt'C version as well (3)
           Gegenfürtner C versions on the various test functions published by
         * imach.c: Summary: Some updates          Brent in 1973 in Algol W.
   
         * imach.c: Summary: Before ncovmax          Also, in order to compare them, the random function had to produce
           the same sequence for the 3 softwares. The random function used in
         * version.h: *** empty log message ***          imach corresponds to original Brent's random function written in
           Algol W.  Other point, in Algol W, the arrays of dimension n are
         * imach.c: Summary: 0.99r18 unlimited number of individuals          'normal' mathematical arrays starting from 1 to n. But this is a
         The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.          real issue in C where, by default, arrays are starting from 0 to
           n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
 2018-12-13  Brouard Nicolas  <brouard@brouard.name>          seen that authors while trying to mimick original Brent Algol W
           code are hesitating by changing either a loop originally from 1 to
         * imach.c: Summary: Bug for young ages (<-30) will be in r17          n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
           shifting the index from original X(I) in Algol W to x[i-1] in C.
 2018-12-05  Brouard Nicolas  <brouard@brouard.name>          But as IMaCh is using, since the beginning, the Numerical Recipes
           functions vector or matrix, I changed Geggenfürtner code to mimick
         * Makefile: Summary: 0.99r16          the original Algol W arrays. Thus the X(I) is translated in C as
           x[i] which minimizes the errors. The Golub QR algorithm was
 2018-05-02  Brouard Nicolas  <brouard@brouard.name>          published in Algol with overflow errors which were reproduced in
           Brent's Algol W code. Buckhardt code fixed these errors which are
         * imach.c: Summary: Some bugs fixed          much more problematic in C than in Algol W.  Thus Buckhardt code
           seems very safe, but i haven't chosen it for IMaCh because the C
 2018-05-02  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          style is horrible and almost unreadable compared to Gegenfürtner
           CO code which is very close to Brent's original. Also what makes
         * imach.c:  Summary: Bug for young ages (<-30) will be in r17          Buckhardt code more difficult to read is, instead of passing the
           minimum of parameters in the functions calls, as it is in Algol
 2018-05-02  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          Brent's code or Gegenfürtner's code, the list of parameters is
           high. For example, the flin function LONG REAL PROCEDURE FLIN
         * imach.c: Summary: Some bugs fixed          (LONG REAL VALUE L) has only one parameter in Algol W, the
           Gegenfürtner flin function had two parameters: static double
 2018-05-01  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
           function has 14 parameters which makes the code unreadable and
         * imach.c:          useless. Gegenfürtner used a lot of static variables or functions
         Summary: Bug fixed by providing frequencies only for non missing covariates          which I tried to minimize. Also in Gegefürtner, array dimensions
           were fixed to N. In my adaptation the flin is static double
 2018-04-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          flin(double l, int j) and the parameter used are global variables.
   
         * imach.c: Summary: some minor bugs  2023-06-14  Nicolas Brouard   <brouard@ined.fr>
   
 2018-04-21  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): Testing if conjugate gradient could be quicker
           when lot of variables POWELLORIGINCONJUGATE
         * README.txt: *** empty log message ***  
   2023-05-23  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Some bugs fixed, valgrind tested  
           * imach.c (Module): Fixed PROB_r 
 2018-04-20  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2023-05-22  Nicolas Brouard   <brouard@ined.fr>
         * Makefile, README.txt, setup.iss: Summary: imach 0.99r16  
           * imach.c (Module): In the ILK....txt file, the number of columns
         * imach.c:          before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
         Summary: Computing mean and stdeviation of fixed quantitative variables  
   2023-05-08  Nicolas Brouard   <brouard@ined.fr>
 2018-04-19  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           *  (Module): Error V0 when result:. and model 1+age+V1: fixed
         * imach.c: Summary: Some minor bugs fixed  
   2023-04-29  Nicolas Brouard  <brouard@ined.fr>
         * version.h: *** empty log message ***  
           * imach.c (Module): Inverting the model equation and fixingg bugs
 2018-02-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          in the drawings
           "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
         * imach.c: *** empty log message ***  
   2023-04-24  Nicolas Brouard  <brouard@ined.fr>
         * imach.c: Summary: Adding second argument for quitting  
           * imach.c (Module): some bugs in printinggnuplot 
 2018-02-21  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-09-19  Nicolas Brouard   <brouard@ined.fr>
         * Makefile, README.txt, imach.c: Summary: 0.99r15  
         New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c          * imach.c (Module): Version 0.99r42 needed a newer version of
           Gnuplot. But newer version 0.99r43 should run with the Gnuplot
 2017-07-20  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          version 5.0 or 5.1 distributed with IMaCh.
   
         * imach.c: Summary: temporary working  2022-09-18  Nicolas Brouard   <brouard@ined.fr>
   
 2017-07-19  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): Fixing when a state in the data is 0 or higher
           than lstate+ndeath. Fixing the plot of contribution to Likelihood.
         * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)  
   2022-09-16  Nicolas Brouard   <brouard@ined.fr>
 2017-07-17  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you  Feinuo
         * imach.c: Summary: BOM files can be read now  
   2022-09-14  Nicolas Brouard   <brouard@ined.fr>
 2017-06-30  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
         * imach.c: Summary: Graphs improvements  
   2022-09-14  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Saito's color  
           * imach.c (Module): Version 0.99r39 with colored dummy covariates
 2017-06-29  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          (fixed or time varying), using new last columns of
           ILK_parameter.txt file.
         * imach.c: Summary: Version 0.99r14  
   2022-09-11  Nicolas Brouard   <brouard@ined.fr>
 2017-06-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): Adding timevarying products of any kinds,
         * imach.c: Summary: More documentation on projections          should work before shifting cotvar from ncovcol+nqv columns in
           order to have a correspondance between the column of cotvar and
         * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)          the id of column.
           (Module): Some cleaning and adding covariates in ILK.txt
         * imach.c: Summary: Some bug with rint  
   2022-09-09  Nicolas Brouard   <brouard@ined.fr>
 2017-05-24  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): Many improvements for fixing products of fixed
         * imach.c: *** empty log message ***          timevarying as well as fixed * fixed, and test with quantitative
           covariate.
 2017-05-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-09-04  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Code into subroutine, cleanings  
           * imach.c (Module): Now the easy runs i.e. without result or
 2017-05-18  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          model=1+age only did not work. The defautl combination should be 1
           and not 0 because everything hasn't been tranformed yet.
         * imach.c:  
         Summary: backprojection and confidence intervals of backprevalence  2022-09-02  Nicolas Brouard   <brouard@ined.fr>
   
 2017-05-13  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Version 0.99r35 because it outputs same results with
           1+age+V1+V1*age for females and 1+age for females only
         * imach.c: Summary: temporary save for backprojection          (education=1 noweight)
   
         * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)  2022-08-31  Nicolas Brouard   <brouard@ined.fr>
   
 2017-04-26  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
   
         * imach.c: Summary: imach 0.99r13 Some bugs fixed  2022-08-21  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Labels in graphs          * imach.c (Module): Version 0.99r33 A lot of changes in
           reassigning covariates: my first idea was that people will always
 2017-04-24  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          use the first covariate V1 into the model but in fact they are
           producing data with many covariates and can use an equation model
         * imach.c: Summary: to save          with some of the covariate; it means that in a model V2+V3 instead
           of codtabm(k,Tvaraff[j]) which calculates for combination k, for
 2017-04-18  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
           the equation model is restricted to two variables only (V2, V3)
         * imach.c: *** empty log message ***          and the combination for V2 should be codtabm(k,1) instead of
           (codtabm(k,2), and the code should be
 2017-04-05  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
           made. All of these should be simplified once a day like we did in
         * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1          hpxij() for example by using precov[nres] which is computed in
           decoderesult for each nres of each resultline. Loop should be done
 2017-04-04  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          on the equation model globally by distinguishing only product with
           age (which are changing with age) and no more on type of
         * imach.c: Summary: Gnuplot indexations fixed (humm)          covariates, single dummies, single covariates. 
   
         * imach.c:  2022-08-06  Nicolas Brouard   <brouard@ined.fr>
         Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3  
           *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
 2017-04-03  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-08-03  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Version 0.99r12  
         Some cleanings, conformed with updated documentation.          *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
   
 2017-03-30  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2022-07-25  Brouard Nicolas  <brouard@brouard.name>
   
         * version.h: *** empty log message ***          * imach.c (Module): Error cptcovn instead of nsd in bmij (was
           coredumped, revealed by Feiuno, thank you.
         * version.h: Summary:0.99r11  
   2022-07-23  Nicolas Brouard   <brouard@ined.fr>
 2017-03-29  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * r29 W and not sqrt(Wald)
         * imach.c: Summary: Temp  
   2022-07-22  Nicolas Brouard   <brouard@ined.fr>
 2017-03-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
         * imach.c: Summary: Temporary  
   2022-06-02  Brouard Nicolas  <brouard@brouard.name>
 2017-03-08  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): Adding the Wald tests from the log to the main
         * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed          htm for better display of the maximum likelihood estimators.
   
         * imach.c: Summary: Fixing data parameter line  2022-05-30  Brouard Nicolas  <brouard@brouard.name>
   
 2016-12-15  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: With products of covariates (age or dummies or
           quantitatives), estimates of parameters were good but when
         * imach.c: Summary: 0.99 in progress          estimating variances the positions of newly created covariates
           were wrongly assigned and results were wrong. Thank to Feinua_Sun!
 2016-09-15  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2022-05-24  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * imach.c (Module): Some attempts to find a bug of wrong estimates
         * imach.c: Summary: not working          of confidencce intervals with product in the equation modelC
   
 2016-09-08  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2022-05-15  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: continue          * imach.c (Module):  Some minor improvements
   
 2016-09-07  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2022-04-13  Brouard Nicolas  <brouard@brouard.name>
   
         * imach.c: Summary: Starting values from frequencies          * imach.c (Module): Adding link to text data files
   
         * imach.c: *** empty log message ***  2022-04-11  Nicolas Brouard   <brouard@ined.fr>
   
 2016-09-02  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
   
         * imach.c: *** empty log message ***  2022-04-05  Brouard Nicolas  <brouard@ined.fr>
   
 2016-08-30  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c (Module): Fixed covariates (dummy or quantitative)
           with missing values have never been allowed but are ERRORS and
         * imach.c: Summary: Fixing a lots          program quits. Standard deviations of fixed covariates were
           wrongly computed. Mean and standard deviations of time varying
 2016-08-29  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          covariates are still not computed.
   
         * imach.c: Summary: gnuplot problem in Back projection to fix  2022-03-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Better          * 99r25 Improvements in fixing discrepancies between covariates
           missing in result line but in model. 
 2016-08-26  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
         * imach.c:          * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
         Summary: Improvement in Powell output in order to copy and paste  
   *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Starting tests of 0.99  
           * ./ (Module): Fixed bug on result:
         * imach.c: Summary: to valgrind  
   *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
 2016-08-25  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c (Module): Fix bug on quitting after result lines!
         * imach.c: *** empty log message ***          (Module): Version 0.99r21
   
 2016-08-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2021-02-12  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c (Module): The use of a Windows BOM (huge) file is now an error
   
         * imach.c: Summary: not working  
   2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
 2016-08-22  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
         * imach.c: Summary: not working  
   2020-02-22  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Not working  
           *  (Module): imach.c Update mle=-3 (for computing Life expectancy
 2016-07-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          and life table from the data without any state)
   
         * imach.c: Summary: Completing for func too  2019-05-20  Brouard Nicolas  <brouard@ined.fr>
   
 2016-07-22  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * version.h: Summary: version 0.99.r19
   
         * imach.c: Summary: Fixing some arrays, still debugging          * imach.c: Summary: Projection syntax simplified
           We can now start projections, forward or backward, from the mean date
 2016-07-21  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          of inteviews up to or down to a number of years of projection:
           prevforecast=1 yearsfproj=15.3 mobil_average=0
         * imach.c:          or
         Summary: 0.99 working (more or less) for Asian Workshop on multitate methods          prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
           or
 2016-07-12  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          prevbackcast=1 yearsbproj=12.3 mobil_average=1
           or
         * imach.c: Summary: temp          prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
   
         * imach.c: Summary: saving but not running  2019-05-18  Brouard Nicolas  <brouard@ined.fr>
   
 2016-07-01  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: doxygen tex bug
   
         * imach.c: Summary: Fixes  2019-05-16  Brouard Nicolas  <brouard@ined.fr>
   
 2016-02-19  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: There was some wrong lines added
   
         * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7  2019-05-09  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss, Makefile, version.h: *** empty log message ***          * Makefile, imach.c: *** empty log message ***
   
         * imach.c: Summary: temporary          * ChangeLog: Summary: C=
   
 2016-02-17  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: Some updates
   
         * imach.c: Summary: Probably last 0.98 stable version 0.98r6          * imach.c: Summary: Before ncovmax
   
 2016-02-16  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * version.h: *** empty log message ***
   
         * imach.c: Summary: minor bug          * imach.c: Summary: 0.99r18 unlimited number of individuals
           The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
         * imach.c: Summary: 0.99r2  
   2018-12-13  Brouard Nicolas  <brouard@ined.fr>
 2016-02-15  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c: Summary: Bug for young ages (<-30) will be in r17
         * imach.c: *** empty log message ***  
   2018-12-05  Brouard Nicolas  <brouard@ined.fr>
 2016-02-12  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * Makefile: Summary: 0.99r16
         * imach.c: Summary: 0.99 Back projections  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
 2015-12-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c: Summary: Some bugs fixed
         * imach.c: Summary: Experimental backcast  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
 2015-12-18  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c:  Summary: Bug for young ages (<-30) will be in r17
         * imach.c: Summary: 0.98r4 Warning and status=-2  
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
         Version 0.98r4 is now:  
          - displaying an error when status is -1, date of interview unknown and date of death known;          * imach.c: Summary: Some bugs fixed
          - permitting a status -2 when the vital status is unknown at a known date of right truncation.  
         Older changes concerning s=-2, dating from 2005 have been supersed.  2018-05-01  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: *** empty log message ***          * imach.c:
           Summary: Bug fixed by providing frequencies only for non missing covariates
 2015-12-16  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
   2018-04-27  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * imach.c: Summary: some minor bugs
         * imach.c: Summary: 0.98r4 working  
   2018-04-21  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: Summary: linuxrpm added  
           * README.txt: *** empty log message ***
         * Makefile: *** empty log message ***  
           * imach.c: Summary: Some bugs fixed, valgrind tested
         * imach.c: Summary: temporary not working  
   2018-04-20  Brouard Nicolas  <brouard@ined.fr>
 2015-12-11  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
         * imach.c: Summary: 0.98r4  
           * imach.c:
 2015-12-08  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          Summary: Computing mean and stdeviation of fixed quantitative variables
   
         * Makefile: *** empty log message ***  2018-04-19  Brouard Nicolas  <brouard@ined.fr>
   
 2015-11-21  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: Some minor bugs fixed
   
         * Makefile:          * version.h: *** empty log message ***
         Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more  
   2018-02-27  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: minor typo  
           * imach.c: *** empty log message ***
         * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional  
           * imach.c: Summary: Adding second argument for quitting
         Author: Nicolas Brouard  
   2018-02-21  Brouard Nicolas  <brouard@ined.fr>
 2015-11-18  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * Makefile, README.txt, imach.c: Summary: 0.99r15
         * imach.c: Summary: Start working on projected prevalences          New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
   
 2015-11-17  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2017-07-20  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Adding ftolpl parameter          * imach.c: Summary: temporary working
         Author: N Brouard  
   2017-07-19  Brouard Nicolas  <brouard@ined.fr>
         We had difficulties to get smoothed confidence intervals. It was due  
         to the period prevalence which wasn't computed accurately. The inner          * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
         parameter ftolpl is now an outer parameter of the .imach parameter  
         file after estepm. If ftolpl is small 1.e-4 and estepm too,  2017-07-17  Brouard Nicolas  <brouard@ined.fr>
         computation are long.  
           * imach.c: Summary: BOM files can be read now
         * version.h: *** empty log message ***  
   2017-06-30  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: temporary  
           * imach.c: Summary: Graphs improvements
 2015-10-27  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c: Summary: Saito's color
         * Makefile: *** empty log message ***  
   2017-06-29  Brouard Nicolas  <brouard@ined.fr>
         * setup.iss.in: Summary: some new subdirs  
           * imach.c: Summary: Version 0.99r14
         * imach.c: *** empty log message ***  
   2017-06-27  Brouard Nicolas  <brouard@ined.fr>
         * setup.iss.in:  
         Summary: Adding gnuplot 5.1 with bin and etc for pango fonts          * imach.c: Summary: More documentation on projections
   
 2015-10-24  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
   
         * imach.c: *** empty log message ***          * imach.c: Summary: Some bug with rint
   
 2015-10-23  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  2017-05-24  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c:          * imach.c: *** empty log message ***
         Summary: 0.98r3 some clarification for graphs on likelihood contributions  
   2017-05-23  Brouard Nicolas  <brouard@ined.fr>
 2015-10-01  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c: Summary: Code into subroutine, cleanings
         * imach.c: Summary: Some new graphs of contribution to likelihood  
   2017-05-18  Brouard Nicolas  <brouard@ined.fr>
 2015-09-30  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c:
         * Makefile:          Summary: backprojection and confidence intervals of backprevalence
         Summary: Version read from version.h, itself read with cmake  
   2017-05-13  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: looking at better estimation of the hessian  
           * imach.c: Summary: temporary save for backprojection
         Also a better criteria for convergence to the period prevalence And  
         therefore adding the number of years needed to converge. (The          * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
         prevalence in any alive state shold sum to one  
   2017-04-26  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * imach.c: Summary: imach 0.99r13 Some bugs fixed
 2015-09-22  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>  
           * imach.c: Summary: Labels in graphs
         * imach.c:  
         Summary: Adding some overall graph on contribution to likelihood. Might change  2017-04-24  Brouard Nicolas  <brouard@ined.fr>
   
 2015-09-15  Brouard Nicolas  <brouard@brouard-antoine.homelinux.com>          * imach.c: Summary: to save
   
         * Makefile: *** empty log message ***  2017-04-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r0          * imach.c: *** empty log message ***
   
         - Some new graphs like suvival functions  2017-04-05  Brouard Nicolas  <brouard@ined.fr>
         - Some bugs fixed like model=1+age+V2.  
           * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
         * ChangeLog, Makefile: Summary: 0.98r0  
   2017-04-04  Brouard Nicolas  <brouard@ined.fr>
         * CMakeLists.txt: Summary: Some tests for setup.iss  
           * imach.c: Summary: Gnuplot indexations fixed (humm)
 2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  
           * imach.c:
         *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc          Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
   
 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>  2017-04-03  Brouard Nicolas  <brouard@ined.fr>
   
         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.          * imach.c: Summary: Version 0.99r12
           Some cleanings, conformed with updated documentation.
 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  
   2017-03-30  Brouard Nicolas  <brouard@ined.fr>
         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)  
           * version.h: *** empty log message ***
 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>  
           * version.h: Summary:0.99r11
         * imach.c (Module): Merging 1.61 to 1.162  
   2017-03-29  Brouard Nicolas  <brouard@ined.fr>
 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>  
           * imach.c: Summary: Temp
         * prevlim.h (Module):  
   2017-03-27  Brouard Nicolas  <brouard@ined.fr>
 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>  
           * imach.c: Summary: Temporary
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...  
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.  2017-03-08  Brouard Nicolas  <brouard@ined.fr>
   
 2010-04-29  brouard  <brouard@ined.fr>          * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
   
         * imach.c (Module): Checking covariates for more complex models          * imach.c: Summary: Fixing data parameter line
         than V1+V2. A lot of change to be done. Unstable.  
   2016-12-15  Brouard Nicolas  <brouard@ined.fr>
 2010-04-26  brouard  <brouard@ined.fr>  
           * imach.c: Summary: 0.99 in progress
         * imach.c (Module): merging some libgsl code. Fixing computation  
         of likelione (using inter/intrapolation if mle = 0) in order to  2016-09-15  Brouard Nicolas  <brouard@ined.fr>
         get same likelihood as if mle=1.  
         Some cleaning of code and comments added.          * imach.c: *** empty log message ***
   
 2009-10-29  brouard  <brouard@ined.fr>          * imach.c: Summary: not working
   
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.  2016-09-08  Brouard Nicolas  <brouard@ined.fr>
   
 2006-06-30  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: continue
   
         * imach.c (Module): Clarifications on computing e.j  2016-09-07  Brouard Nicolas  <brouard@ined.fr>
   
 2006-04-28  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: Starting values from frequencies
   
         * imach.c (Module): Yes the sum of survivors was wrong since          * imach.c: *** empty log message ***
         imach-114 because nhstepm was no more computed in the age  
         loop. Now we define nhstepma in the age loop.  2016-09-02  Brouard Nicolas  <brouard@ined.fr>
         (Module): In order to speed up (in case of numerous covariates) we  
         compute health expectancies (without variances) in a first step          * imach.c: *** empty log message ***
         and then all the health expectancies with variances or standard  
         deviation (needs data from the Hessian matrices) which slows the  2016-08-30  Brouard Nicolas  <brouard@ined.fr>
         computation.  
         In the future we should be able to stop the program is only health          * imach.c: Summary: Fixing a lots
         expectancies and graph are needed without standard deviations.  
   2016-08-29  Brouard Nicolas  <brouard@ined.fr>
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * imach.c: Summary: gnuplot problem in Back projection to fix
         * imach.iss (Module):  
           * imach.c: Summary: Better
         * imach.c (Module): bugs in evsi + population file added in htm output file  
   2016-08-26  Brouard Nicolas  <brouard@ined.fr>
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * imach.c:
         * imach.c (Module):          Summary: Improvement in Powell output in order to copy and paste
   
 2006-03-20  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: Starting tests of 0.99
   
         * imach.c (Module): <title> changed, corresponds to .htm file          * imach.c: Summary: to valgrind
         name. <head> headers where missing.  
   2016-08-25  Brouard Nicolas  <brouard@ined.fr>
         * Makefile (Module): 0.98g  
           * imach.c: *** empty log message ***
         * imach.c (Module): Weights can have a decimal point as for  
         English (a comma might work with a correct LC_NUMERIC environment,  2016-08-23  Brouard Nicolas  <brouard@ined.fr>
         otherwise the weight is truncated).  
         Modification of warning when the covariates values are not 0 or          * imach.c: *** empty log message ***
         1.  
         Version 0.98g          * imach.c: Summary: not working
   
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  2016-08-22  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Comments concerning covariates added          * imach.c: Summary: not working
   
         * noreg-setup.iss (Module): Version 0.98f          * imach.c: Summary: Not working
   
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup  2016-07-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): refinements in the computation of lli if          * imach.c: Summary: Completing for func too
         status=-2 in order to have more reliable computation if stepm is  
         not 1 month. Version 0.98f  2016-07-22  Brouard Nicolas  <brouard@ined.fr>
   
 2006-03-15  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: Fixing some arrays, still debugging
   
         * imach.c (Module): Bug if status = -2, the loglikelihood was  2016-07-21  Brouard Nicolas  <brouard@ined.fr>
         computed as likelihood omitting the logarithm. Version O.98e  
           * imach.c:
 2006-03-14  Brouard Nicolas  <brouard@localhost>          Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
   
         * imach.c (Module): varevsij Comments added explaining the second  2016-07-12  Brouard Nicolas  <brouard@ined.fr>
         table of variances if popbased=1 .  
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.          * imach.c: Summary: temp
         (Module): Function pstamp added  
         (Module): Version 0.98d          * imach.c: Summary: saving but not running
   
 2006-03-06  Brouard Nicolas  <brouard@localhost>  2016-07-01  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Variance-covariance wrong links and          * imach.c: Summary: Fixes
         varian-covariance of ej. is needed (Saito).  
   2016-02-19  Brouard Nicolas  <brouard@ined.fr>
 2006-02-27  Brouard Nicolas  <brouard@localhost>  
           * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
         * imach.c (Module): One freematrix added in mlikeli!  
           * setup.iss, Makefile, version.h: *** empty log message ***
 2006-02-26  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: temporary
         * imach.c (Module): Some improvements in processing parameter  
         filename with strsep.  2016-02-17  Brouard Nicolas  <brouard@ined.fr>
   
 2006-02-24  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: Probably last 0.98 stable version 0.98r6
   
         * imach.c (Module): Memory leaks checks with valgrind and:  2016-02-16  Brouard Nicolas  <brouard@ined.fr>
         datafile was not closed, some imatrix were not freed and on matrix  
         allocation too.          * imach.c: Summary: minor bug
   
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * imach.c: Summary: 0.99r2
   
         * strsep.c (Module): Inclusion because not in mingw32!!!  2016-02-15  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss.in (Module): IMACHSETUPVERSION added          * imach.c: *** empty log message ***
   
         * noreg-setup.iss (Module): added to cvs tree  2016-02-12  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile (Module): IMACHSETUPVERSION added          * imach.c: Summary: 0.99 Back projections
   
 2006-01-30  BROUARD Nicolas  <brouard@localhost>  2015-12-23  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile (Module, Module): Latest Makefile          * imach.c: Summary: Experimental backcast
   
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe  2015-12-18  Brouard Nicolas  <brouard@ined.fr>
   
 2006-01-27  BROUARD Nicolas  <brouard@localhost>          * imach.c: Summary: 0.98r4 Warning and status=-2
   
         * noreg-setup.iss (Module): ADDED          Version 0.98r4 is now:
            - displaying an error when status is -1, date of interview unknown and date of death known;
 2006-01-24  BROUARD Nicolas  <brouard@localhost>           - permitting a status -2 when the vital status is unknown at a known date of right truncation.
           Older changes concerning s=-2, dating from 2005 have been supersed.
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.  
           * Makefile: *** empty log message ***
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>  
   2015-12-16  Brouard Nicolas  <brouard@ined.fr>
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg  
           * Makefile: *** empty log message ***
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X  
           * imach.c: Summary: 0.98r4 working
 2005-09-30    <lievre@PC_00595>  
           * Makefile: Summary: linuxrpm added
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.  
         (Module): If the status is missing at the last wave but we know          * Makefile: *** empty log message ***
         that the person is alive, then we can code his/her status as -2  
         (instead of missing=-1 in earlier versions) and his/her          * imach.c: Summary: temporary not working
         contributions to the likelihood is 1 - Prob of dying from last  
         health status (= 1-p13= p11+p12 in the easiest case of somebody in  2015-12-11  Brouard Nicolas  <brouard@ined.fr>
         the healthy state at last known wave). Version is 0.98  
           * imach.c: Summary: 0.98r4
 2004-05-20  Brouard Nicolas  <brouard@localhost>  
   2015-12-08  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Repository):  
         Agnes added a direct estimation of mortality (without the need of          * Makefile: *** empty log message ***
         computing period prevalence and differential mortality). Thus here  
         is version 0.97a which has been distributed to some people at  2015-11-21  Brouard Nicolas  <brouard@ined.fr>
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of  
         mortality using covariates is not done today. Estimating direct          * Makefile:
         mortality is a very different process because it doesn't need          Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
         interpolation because it is easy to get the lx from the force of  
         the mortality mux in the simplest case as for a Gompertz (log mux          * imach.c: Summary: minor typo
         = a + b*x . But we have been able to incorporate the new code  
         within former imach program (0.96d) without deteriorating too much          * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
         the understanding of the program.  
           Author: Nicolas Brouard
 2003-06-25    <brouard@BROUARD>  
   2015-11-18  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't  
         exist so I changed back to asctime which exists.          * imach.c: Summary: Start working on projected prevalences
         (Module): Version 0.96b  
   2015-11-17  Brouard Nicolas  <brouard@ined.fr>
 2003-06-24    <brouard@BROUARD>  
           * imach.c: Summary: Adding ftolpl parameter
         * imach.c (Module): Some bugs corrected for windows. Also, when          Author: N Brouard
         mle=-1 a template is output in file "or"mypar.txt with the design  
         of the covariance matrix to be input.          We had difficulties to get smoothed confidence intervals. It was due
           to the period prevalence which wasn't computed accurately. The inner
 2003-06-25  Brouard Nicolas  <brouard@homebrou>          parameter ftolpl is now an outer parameter of the .imach parameter
           file after estepm. If ftolpl is small 1.e-4 and estepm too,
         * imach.c (Repository): Duplicated warning errors corrected.          computation are long.
         (Repository): Elapsed time after each iteration is now output. It  
         helps to forecast when convergence will be reached. Elapsed time          * version.h: *** empty log message ***
         is stamped in powell.  We created a new html file for the graphs  
         concerning matrix of covariance. It has extension -cov.htm.          * imach.c: Summary: temporary
   
 2003-06-23  Brouard Nicolas  <brouard@homebrou>  2015-10-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.          * Makefile: *** empty log message ***
   
 2003-06-18  Brouard Nicolas  <brouard@homebrou>          * setup.iss.in: Summary: some new subdirs
   
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96          * imach.c: *** empty log message ***
   
 2003-06-17  Brouard Nicolas  <brouard@homebrou>          * setup.iss.in:
           Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
   
         * imach.c (Repository): Check when date of death was earlier that  2015-10-24  Brouard Nicolas  <brouard@ined.fr>
         current date of interview. It may happen when the death was just  
         prior to the death. In this case, dh was negative and likelihood          * imach.c: *** empty log message ***
         was wrong (infinity). We still send an "Error" but patch by  
         assuming that the date of death was just one stepm after the  2015-10-23  Brouard Nicolas  <brouard@ined.fr>
         interview.  
         (Repository): Because some people have very long ID (first column)          * imach.c:
         we changed int to long in num[] and we added a new lvector for          Summary: 0.98r3 some clarification for graphs on likelihood contributions
         memory allocation. But we also truncated to 8 characters (left  
         truncation)  2015-10-01  Brouard Nicolas  <brouard@ined.fr>
   
         (Repository): No more line truncation errors.          * imach.c: Summary: Some new graphs of contribution to likelihood
   
 2003-06-14  Brouard Nicolas  <brouard@homebrou>  2015-09-30  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Repository): Add of a routine likelione (likelihood          * Makefile:
         only once) which prints on a text file          Summary: Version read from version.h, itself read with cmake
         (ilk) the contributions to the likelihood for each  
         individual/wave.          * imach.c: Summary: looking at better estimation of the hessian
   
 2003-06-13  Brouard Nicolas  <brouard@homebrou>          Also a better criteria for convergence to the period prevalence And
         * imach.c (Repository): Replace "freqsummary" at a correct          therefore adding the number of years needed to converge. (The
         place. It differs from routine "prevalence" which may be called          prevalence in any alive state shold sum to one
         many times. Probs is memory consuming and must be used with  
         parcimony.          * Makefile: *** empty log message ***
   
 2003-06-17    <brouard@BROUARD>  2015-09-22  Brouard Nicolas  <brouard@ined.fr>
   
         * timeval.h (Module): Added included file to make use of          * imach.c:
         gettimeofday working on win32 with cygwin.          Summary: Adding some overall graph on contribution to likelihood. Might change
   
 2003-05-16  Brouard Nicolas  <brouard@brouard>  2015-09-15  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Insert of a warning if the delay between two  
         waves is negative.          * Makefile: *** empty log message ***
   
         * imach.c (Module):          * imach.c: Summary: 0.98r0
   
 2003-05-03    <brouard@BROUARD>          - Some new graphs like survival functions
           - Some bugs fixed like model=1+age+V2.
         * imach.c: Some cleaning  
           * ChangeLog, Makefile: Summary: 0.98r0
 2003-03-28    <brouard@BROUARD>  
         * imach.c (Module): In version up to 0.92 likelihood was computed          * CMakeLists.txt: Summary: Some tests for setup.iss
         as if date of death was unknown. Death was treated as any other  
         health state: the date of the interview describes the actual state  2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         and not the date of a change in health state. The former idea was  
         to consider that at each interview the state was recorded          *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
         (healthy, disable or death) and IMaCh was corrected; but when we  
         introduced the exact date of death then we should have modified  2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
         the contribution of an exact death to the likelihood. This new  
         contribution is smaller and very dependent of the step unit          *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
         stepm. It is no more the probability to die between last interview  
         and month of death but the probability to survive from last  2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         interview up to one month before death multiplied by the  
         probability to die within a month. Thanks to Chris          *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
         Jackson for correcting this bug.  Former versions increased  
         mortality artificially. The bad side is that we add another loop  2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
   
           * imach.c (Module): Merging 1.61 to 1.162
         which slows down the processing. The difference can be up to 10%  
   2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
   
         lower mortality.          * prevlim.h (Module): 
   
   2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
   
           * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
           (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
 2002-05-30    <brouard@BROUARD>  
   2010-04-29  brouard  <brouard@ined.fr>
   
           * imach.c (Module): Checking covariates for more complex models
           than V1+V2. A lot of change to be done. Unstable.
   
         *  2010-04-26  brouard  <brouard@ined.fr>
   
           * imach.c (Module): merging some libgsl code. Fixing computation
           of likelione (using inter/intrapolation if mle = 0) in order to
           get same likelihood as if mle=1.
           Some cleaning of code and comments added.
         * imach.c (Module): Add correlation matrix of one-step  
   2009-10-29  brouard  <brouard@ined.fr>
   
         probabilities and covariance matrix          * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
   
   2006-06-30  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Clarifications on computing e.j
   
   2006-04-28  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Yes the sum of survivors was wrong since
           imach-114 because nhstepm was no more computed in the age
           loop. Now we define nhstepma in the age loop.
           (Module): In order to speed up (in case of numerous covariates) we
           compute health expectancies (without variances) in a first step
           and then all the health expectancies with variances or standard
           deviation (needs data from the Hessian matrices) which slows the
           computation.
           In the future we should be able to stop the program is only health
           expectancies and graph are needed without standard deviations.
   
   2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.iss (Module): 
   
           * imach.c (Module): bugs in evsi + population file added in htm output file
   
   2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): 
   
   2006-03-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): <title> changed, corresponds to .htm file
           name. <head> headers where missing.
   
           * Makefile (Module): 0.98g
   
           * imach.c (Module): Weights can have a decimal point as for
           English (a comma might work with a correct LC_NUMERIC environment,
           otherwise the weight is truncated).
           Modification of warning when the covariates values are not 0 or
           1. 
           Version 0.98g
   
   2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): Comments concerning covariates added
   
           * noreg-setup.iss (Module): Version 0.98f
   
           * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
   
           * imach.c (Module): refinements in the computation of lli if
           status=-2 in order to have more reliable computation if stepm is
           not 1 month. Version 0.98f
   
   2006-03-15  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Bug if status = -2, the loglikelihood was
           computed as likelihood omitting the logarithm. Version O.98e
   
   2006-03-14  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): varevsij Comments added explaining the second
           table of variances if popbased=1 .
           (Module): Covariances of eij, ekl added, graphs fixed, new html link.
           (Module): Function pstamp added
           (Module): Version 0.98d 
   
   2006-03-06  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Variance-covariance wrong links and
           varian-covariance of ej. is needed (Saito).
   
   2006-02-27  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): One freematrix added in mlikeli!
   
   2006-02-26  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Some improvements in processing parameter
           filename with strsep.
   
   2006-02-24  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Memory leaks checks with valgrind and:
           datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
   
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * strsep.c (Module): Inclusion because not in mingw32!!!
   
           * setup.iss.in (Module): IMACHSETUPVERSION added
   
           * noreg-setup.iss (Module): added to cvs tree
   
           * Makefile (Module): IMACHSETUPVERSION added
   
   2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
           * Makefile (Module, Module): Latest Makefile
   
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
           * noreg-setup.iss (Module): ADDED
   
   2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
           * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
   2005-09-30    <lievre@PC_00595>
   
           * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
           that the person is alive, then we can code his/her status as -2
           (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
           health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98 
   
   2004-05-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Repository): 
           Agnes added a direct estimation of mortality (without the need of
           computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
           REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
           mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
           the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
           within former imach program (0.96d) without deteriorating too much
           the understanding of the program. 
   
   2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module): 
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
           which slows down the processing. The difference can be up to 10%
           lower mortality.
   
   2002-05-30    <brouard@BROUARD>
   
           * imach.c (Module): Add correlation matrix of one-step
           probabilities and covariance matrix
   
Removed from v.1.40  
changed lines
  Added in v.1.70

FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>