Diff for /imach/src/ChangeLog between versions 1.47 and 1.69

version 1.47, 2022/03/17 08:58:13 version 1.69, 2024/04/30 10:58:21
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 2022-03-17  Brouard Nicolas  <brouard@ined.fr  >  2024-04-30  Nicolas Brouard   <brouard@ined.fr>
   
         * 99r25 Improvements in fixing discrepancies between covariates          * (Module): In version 0.99s4, we incorporated the calculation of
         missing in result line but in model.          the std error of the proportion of total life expectancy spent in
           a specific state Var(e.j/e..) using the formula of Var(X/Y)
 *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>          depending only of the variances of X and Y and expectancies.
         * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett  
   2024-04-24  Nicolas Brouard   <brouard@ined.fr>
 *2021-03-08  Nicolas Brouard   <brouard@ined.fr>  
           * (Module): This version comes late after having tested
         * ./ (Module): Fixed bug on result:          successfully the praxis C version of Buckhardt.  But Buckardt's
           version was difficult to read and Gegenfurtner's version had a few
 *2021-02-20  Nicolas Brouard   <brouard@ined.fr>          typos which made its results less reliable than Buckhardt's
           results.  The most important work consisted in retyping the Brent
         * imach.c (Module): Fix bug on quitting after result lines!          original PRAXIS program written in Algol W (published with errors,
         (Module): Version 0.99r21          ommitting the transposition of matrix V before its QR reduction
           from Golub. I used the recent "awe" compiler from Gkynn Webster.
 2021-02-12  Nicolas Brouard   <brouard@ined.fr>          The awe library had errors, for example in arc tangent function
           which have been fixed.
         * imach.c (Module): The use of a Windows BOM (huge) file is now an error  
           The main objective was to get identical results with the three
           versions: (1) Algol W, (2) Buckhardt'C version as well (3)
 2021-02-11  Nicolas  Brouard   <brouard@ined.fr>          Gegenfürtner C versions on the various test functions published by
           Brent in 1973 in Algol W.
         *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.  
           Also, in order to compare them, the random function had to produce
 2020-02-22  Brouard Nicolas  <brouard@ined.fr>          the same sequence for the 3 softwares. The random function used in
           imach corresponds to original Brent's random function written in
         *  (Module): imach.c Update mle=-3 (for computing Life expectancy          Algol W.  Other point, in Algol W, the arrays of dimension n are
         and life table from the data without any state)          'normal' mathematical arrays starting from 1 to n. But this is a
           real issue in C where, by default, arrays are starting from 0 to
 2019-05-20  Brouard Nicolas  <brouard@ined.fr>          n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
           seen that authors while trying to mimick original Brent Algol W
         * version.h: Summary: version 0.99.r19          code are hesitating by changing either a loop originally from 1 to
           n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
         * imach.c: Summary: Projection syntax simplified          shifting the index from original X(I) in Algol W to x[i-1] in C.
         We can now start projections, forward or backward, from the mean date          But as IMaCh is using, since the beginning, the Numerical Recipes
         of inteviews up to or down to a number of years of projection:          functions vector or matrix, I changed Geggenfürtner code to mimick
         prevforecast=1 yearsfproj=15.3 mobil_average=0          the original Algol W arrays. Thus the X(I) is translated in C as
         or          x[i] which minimizes the errors. The Golub QR algorithm was
         prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0          published in Algol with overflow errors which were reproduced in
         or          Brent's Algol W code. Buckhardt code fixed these errors which are
         prevbackcast=1 yearsbproj=12.3 mobil_average=1          much more problematic in C than in Algol W.  Thus Buckhardt code
         or          seems very safe, but i haven't chosen it for IMaCh because the C
         prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1          style is horrible and almost unreadable compared to Gegenfürtner
           CO code which is very close to Brent's original. Also what makes
 2019-05-18  Brouard Nicolas  <brouard@ined.fr>          Buckhardt code more difficult to read is, instead of passing the
           minimum of parameters in the functions calls, as it is in Algol
         * imach.c: Summary: doxygen tex bug          Brent's code or Gegenfürtner's code, the list of parameters is
           high. For example, the flin function LONG REAL PROCEDURE FLIN
 2019-05-16  Brouard Nicolas  <brouard@ined.fr>          (LONG REAL VALUE L) has only one parameter in Algol W, the
           Gegenfürtner flin function had two parameters: static double
         * imach.c: Summary: There was some wrong lines added          flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
           function has 14 parameters which makes the code unreadable and
 2019-05-09  Brouard Nicolas  <brouard@ined.fr>          useless. Gegenfürtner used a lot of static variables or functions
           which I tried to minimize. Also in Gegefürtner, array dimensions
         * Makefile, imach.c: *** empty log message ***          were fixed to N. In my adaptation the flin is static double
           flin(double l, int j) and the parameter used are global variables.
         * ChangeLog: Summary: C=  
   2023-06-14  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Some updates  
           * imach.c (Module): Testing if conjugate gradient could be quicker
         * imach.c: Summary: Before ncovmax          when lot of variables POWELLORIGINCONJUGATE
   
         * version.h: *** empty log message ***  2023-05-23  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: 0.99r18 unlimited number of individuals          * imach.c (Module): Fixed PROB_r 
         The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.  
   2023-05-22  Nicolas Brouard   <brouard@ined.fr>
 2018-12-13  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): In the ILK....txt file, the number of columns
         * imach.c: Summary: Bug for young ages (<-30) will be in r17          before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
   
 2018-12-05  Brouard Nicolas  <brouard@ined.fr>  2023-05-08  Nicolas Brouard   <brouard@ined.fr>
   
         * Makefile: Summary: 0.99r16          *  (Module): Error V0 when result:. and model 1+age+V1: fixed
   
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  2023-04-29  Nicolas Brouard  <brouard@ined.fr>
   
         * imach.c: Summary: Some bugs fixed          * imach.c (Module): Inverting the model equation and fixingg bugs
           in the drawings
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>          "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
   
         * imach.c:  Summary: Bug for young ages (<-30) will be in r17  2023-04-24  Nicolas Brouard  <brouard@ined.fr>
   
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): some bugs in printinggnuplot 
   
         * imach.c: Summary: Some bugs fixed  2022-09-19  Nicolas Brouard   <brouard@ined.fr>
   
 2018-05-01  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Version 0.99r42 needed a newer version of
           Gnuplot. But newer version 0.99r43 should run with the Gnuplot
         * imach.c:          version 5.0 or 5.1 distributed with IMaCh.
         Summary: Bug fixed by providing frequencies only for non missing covariates  
   2022-09-18  Nicolas Brouard   <brouard@ined.fr>
 2018-04-27  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Fixing when a state in the data is 0 or higher
         * imach.c: Summary: some minor bugs          than lstate+ndeath. Fixing the plot of contribution to Likelihood.
   
 2018-04-21  Brouard Nicolas  <brouard@ined.fr>  2022-09-16  Nicolas Brouard   <brouard@ined.fr>
   
         * README.txt: *** empty log message ***          * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you  Feinuo
   
         * imach.c: Summary: Some bugs fixed, valgrind tested  2022-09-14  Nicolas Brouard   <brouard@ined.fr>
   
 2018-04-20  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
   
         * Makefile, README.txt, setup.iss: Summary: imach 0.99r16  2022-09-14  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c:          * imach.c (Module): Version 0.99r39 with colored dummy covariates
         Summary: Computing mean and stdeviation of fixed quantitative variables          (fixed or time varying), using new last columns of
           ILK_parameter.txt file.
 2018-04-19  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-11  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Some minor bugs fixed  
           * imach.c (Module): Adding timevarying products of any kinds,
         * version.h: *** empty log message ***          should work before shifting cotvar from ncovcol+nqv columns in
           order to have a correspondance between the column of cotvar and
 2018-02-27  Brouard Nicolas  <brouard@ined.fr>          the id of column.
           (Module): Some cleaning and adding covariates in ILK.txt
         * imach.c: *** empty log message ***  
   2022-09-09  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Adding second argument for quitting  
           * imach.c (Module): Many improvements for fixing products of fixed
 2018-02-21  Brouard Nicolas  <brouard@ined.fr>          timevarying as well as fixed * fixed, and test with quantitative
           covariate.
         * Makefile, README.txt, imach.c: Summary: 0.99r15  
         New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c  2022-09-04  Nicolas Brouard   <brouard@ined.fr>
   
 2017-07-20  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Now the easy runs i.e. without result or
           model=1+age only did not work. The defautl combination should be 1
         * imach.c: Summary: temporary working          and not 0 because everything hasn't been tranformed yet.
   
 2017-07-19  Brouard Nicolas  <brouard@ined.fr>  2022-09-02  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)          * imach.c: Version 0.99r35 because it outputs same results with
           1+age+V1+V1*age for females and 1+age for females only
 2017-07-17  Brouard Nicolas  <brouard@ined.fr>          (education=1 noweight)
   
         * imach.c: Summary: BOM files can be read now  2022-08-31  Nicolas Brouard   <brouard@ined.fr>
   
 2017-06-30  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
   
         * imach.c: Summary: Graphs improvements  2022-08-21  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Saito's color          * imach.c (Module): Version 0.99r33 A lot of changes in
           reassigning covariates: my first idea was that people will always
 2017-06-29  Brouard Nicolas  <brouard@ined.fr>          use the first covariate V1 into the model but in fact they are
           producing data with many covariates and can use an equation model
         * imach.c: Summary: Version 0.99r14          with some of the covariate; it means that in a model V2+V3 instead
           of codtabm(k,Tvaraff[j]) which calculates for combination k, for
 2017-06-27  Brouard Nicolas  <brouard@ined.fr>          three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
           the equation model is restricted to two variables only (V2, V3)
         * imach.c: Summary: More documentation on projections          and the combination for V2 should be codtabm(k,1) instead of
           (codtabm(k,2), and the code should be
         * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)          codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
           made. All of these should be simplified once a day like we did in
         * imach.c: Summary: Some bug with rint          hpxij() for example by using precov[nres] which is computed in
           decoderesult for each nres of each resultline. Loop should be done
 2017-05-24  Brouard Nicolas  <brouard@ined.fr>          on the equation model globally by distinguishing only product with
           age (which are changing with age) and no more on type of
         * imach.c: *** empty log message ***          covariates, single dummies, single covariates. 
   
 2017-05-23  Brouard Nicolas  <brouard@ined.fr>  2022-08-06  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Code into subroutine, cleanings          *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
   
 2017-05-18  Brouard Nicolas  <brouard@ined.fr>  2022-08-03  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c:          *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
         Summary: backprojection and confidence intervals of backprevalence  
   2022-07-25  Brouard Nicolas  <brouard@brouard.name>
 2017-05-13  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Error cptcovn instead of nsd in bmij (was
         * imach.c: Summary: temporary save for backprojection          coredumped, revealed by Feiuno, thank you.
   
         * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)  2022-07-23  Nicolas Brouard   <brouard@ined.fr>
   
 2017-04-26  Brouard Nicolas  <brouard@ined.fr>          * r29 W and not sqrt(Wald)
   
         * imach.c: Summary: imach 0.99r13 Some bugs fixed  2022-07-22  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Labels in graphs          *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
   
 2017-04-24  Brouard Nicolas  <brouard@ined.fr>  2022-06-02  Brouard Nicolas  <brouard@brouard.name>
   
         * imach.c: Summary: to save          * imach.c (Module): Adding the Wald tests from the log to the main
           htm for better display of the maximum likelihood estimators.
 2017-04-18  Brouard Nicolas  <brouard@ined.fr>  
   2022-05-30  Brouard Nicolas  <brouard@brouard.name>
         * imach.c: *** empty log message ***  
           * imach.c: With products of covariates (age or dummies or
 2017-04-05  Brouard Nicolas  <brouard@ined.fr>          quantitatives), estimates of parameters were good but when
           estimating variances the positions of newly created covariates
         * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1          were wrongly assigned and results were wrong. Thank to Feinua_Sun!
   
 2017-04-04  Brouard Nicolas  <brouard@ined.fr>  2022-05-24  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Gnuplot indexations fixed (humm)          * imach.c (Module): Some attempts to find a bug of wrong estimates
           of confidencce intervals with product in the equation modelC
         * imach.c:  
         Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3  2022-05-15  Nicolas Brouard   <brouard@ined.fr>
   
 2017-04-03  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module):  Some minor improvements
   
         * imach.c: Summary: Version 0.99r12  2022-04-13  Brouard Nicolas  <brouard@brouard.name>
         Some cleanings, conformed with updated documentation.  
           * imach.c (Module): Adding link to text data files
 2017-03-30  Brouard Nicolas  <brouard@ined.fr>  
   2022-04-11  Nicolas Brouard   <brouard@ined.fr>
         * version.h: *** empty log message ***  
           * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
         * version.h: Summary:0.99r11  
   2022-04-05  Brouard Nicolas  <brouard@ined.fr>
 2017-03-29  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Fixed covariates (dummy or quantitative)
         * imach.c: Summary: Temp          with missing values have never been allowed but are ERRORS and
           program quits. Standard deviations of fixed covariates were
 2017-03-27  Brouard Nicolas  <brouard@ined.fr>          wrongly computed. Mean and standard deviations of time varying
           covariates are still not computed.
         * imach.c: Summary: Temporary  
   2022-03-17  Brouard Nicolas  <brouard@ined.fr>
 2017-03-08  Brouard Nicolas  <brouard@ined.fr>  
           * 99r25 Improvements in fixing discrepancies between covariates
         * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed          missing in result line but in model. 
   
         * imach.c: Summary: Fixing data parameter line  *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
           * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
 2016-12-15  Brouard Nicolas  <brouard@ined.fr>  
   *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: 0.99 in progress  
           * ./ (Module): Fixed bug on result:
 2016-09-15  Brouard Nicolas  <brouard@ined.fr>  
   *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * imach.c (Module): Fix bug on quitting after result lines!
         * imach.c: Summary: not working          (Module): Version 0.99r21
   
 2016-09-08  Brouard Nicolas  <brouard@ined.fr>  2021-02-12  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: continue          * imach.c (Module): The use of a Windows BOM (huge) file is now an error
   
 2016-09-07  Brouard Nicolas  <brouard@ined.fr>  
   2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
         * imach.c: Summary: Starting values from frequencies  
           *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
         * imach.c: *** empty log message ***  
   2020-02-22  Brouard Nicolas  <brouard@ined.fr>
 2016-09-02  Brouard Nicolas  <brouard@ined.fr>  
           *  (Module): imach.c Update mle=-3 (for computing Life expectancy
         * imach.c: *** empty log message ***          and life table from the data without any state)
   
 2016-08-30  Brouard Nicolas  <brouard@ined.fr>  2019-05-20  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Fixing a lots          * version.h: Summary: version 0.99.r19
   
 2016-08-29  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Projection syntax simplified
           We can now start projections, forward or backward, from the mean date
         * imach.c: Summary: gnuplot problem in Back projection to fix          of inteviews up to or down to a number of years of projection:
           prevforecast=1 yearsfproj=15.3 mobil_average=0
         * imach.c: Summary: Better          or
           prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
 2016-08-26  Brouard Nicolas  <brouard@ined.fr>          or
           prevbackcast=1 yearsbproj=12.3 mobil_average=1
         * imach.c:          or
         Summary: Improvement in Powell output in order to copy and paste          prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
   
         * imach.c: Summary: Starting tests of 0.99  2019-05-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: to valgrind          * imach.c: Summary: doxygen tex bug
   
 2016-08-25  Brouard Nicolas  <brouard@ined.fr>  2019-05-16  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: Summary: There was some wrong lines added
   
 2016-08-23  Brouard Nicolas  <brouard@ined.fr>  2019-05-09  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * Makefile, imach.c: *** empty log message ***
   
         * imach.c: Summary: not working          * ChangeLog: Summary: C=
   
 2016-08-22  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Some updates
   
         * imach.c: Summary: not working          * imach.c: Summary: Before ncovmax
   
         * imach.c: Summary: Not working          * version.h: *** empty log message ***
   
 2016-07-23  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: 0.99r18 unlimited number of individuals
           The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
         * imach.c: Summary: Completing for func too  
   2018-12-13  Brouard Nicolas  <brouard@ined.fr>
 2016-07-22  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Bug for young ages (<-30) will be in r17
         * imach.c: Summary: Fixing some arrays, still debugging  
   2018-12-05  Brouard Nicolas  <brouard@ined.fr>
 2016-07-21  Brouard Nicolas  <brouard@ined.fr>  
           * Makefile: Summary: 0.99r16
         * imach.c:  
         Summary: 0.99 working (more or less) for Asian Workshop on multitate methods  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
 2016-07-12  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Some bugs fixed
   
         * imach.c: Summary: temp  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: saving but not running          * imach.c:  Summary: Bug for young ages (<-30) will be in r17
   
 2016-07-01  Brouard Nicolas  <brouard@ined.fr>  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Fixes          * imach.c: Summary: Some bugs fixed
   
 2016-02-19  Brouard Nicolas  <brouard@ined.fr>  2018-05-01  Brouard Nicolas  <brouard@ined.fr>
   
         * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7          * imach.c:
           Summary: Bug fixed by providing frequencies only for non missing covariates
         * setup.iss, Makefile, version.h: *** empty log message ***  
   2018-04-27  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: temporary  
           * imach.c: Summary: some minor bugs
 2016-02-17  Brouard Nicolas  <brouard@ined.fr>  
   2018-04-21  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Probably last 0.98 stable version 0.98r6  
           * README.txt: *** empty log message ***
 2016-02-16  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Some bugs fixed, valgrind tested
         * imach.c: Summary: minor bug  
   2018-04-20  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.99r2  
           * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
 2016-02-15  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c:
         * imach.c: *** empty log message ***          Summary: Computing mean and stdeviation of fixed quantitative variables
   
 2016-02-12  Brouard Nicolas  <brouard@ined.fr>  2018-04-19  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.99 Back projections          * imach.c: Summary: Some minor bugs fixed
   
 2015-12-23  Brouard Nicolas  <brouard@ined.fr>          * version.h: *** empty log message ***
   
         * imach.c: Summary: Experimental backcast  2018-02-27  Brouard Nicolas  <brouard@ined.fr>
   
 2015-12-18  Brouard Nicolas  <brouard@ined.fr>          * imach.c: *** empty log message ***
   
         * imach.c: Summary: 0.98r4 Warning and status=-2          * imach.c: Summary: Adding second argument for quitting
   
         Version 0.98r4 is now:  2018-02-21  Brouard Nicolas  <brouard@ined.fr>
          - displaying an error when status is -1, date of interview unknown and date of death known;  
          - permitting a status -2 when the vital status is unknown at a known date of right truncation.          * Makefile, README.txt, imach.c: Summary: 0.99r15
         Older changes concerning s=-2, dating from 2005 have been supersed.          New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
   
         * Makefile: *** empty log message ***  2017-07-20  Brouard Nicolas  <brouard@ined.fr>
   
 2015-12-16  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: temporary working
   
         * Makefile: *** empty log message ***  2017-07-19  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: 0.98r4 working          * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
   
         * Makefile: Summary: linuxrpm added  2017-07-17  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: *** empty log message ***          * imach.c: Summary: BOM files can be read now
   
         * imach.c: Summary: temporary not working  2017-06-30  Brouard Nicolas  <brouard@ined.fr>
   
 2015-12-11  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Graphs improvements
   
         * imach.c: Summary: 0.98r4          * imach.c: Summary: Saito's color
   
 2015-12-08  Brouard Nicolas  <brouard@ined.fr>  2017-06-29  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: *** empty log message ***          * imach.c: Summary: Version 0.99r14
   
 2015-11-21  Brouard Nicolas  <brouard@ined.fr>  2017-06-27  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile:          * imach.c: Summary: More documentation on projections
         Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more  
           * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
         * imach.c: Summary: minor typo  
           * imach.c: Summary: Some bug with rint
         * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional  
   2017-05-24  Brouard Nicolas  <brouard@ined.fr>
         Author: Nicolas Brouard  
           * imach.c: *** empty log message ***
 2015-11-18  Brouard Nicolas  <brouard@ined.fr>  
   2017-05-23  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Start working on projected prevalences  
           * imach.c: Summary: Code into subroutine, cleanings
 2015-11-17  Brouard Nicolas  <brouard@ined.fr>  
   2017-05-18  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Adding ftolpl parameter  
         Author: N Brouard          * imach.c:
           Summary: backprojection and confidence intervals of backprevalence
         We had difficulties to get smoothed confidence intervals. It was due  
         to the period prevalence which wasn't computed accurately. The inner  2017-05-13  Brouard Nicolas  <brouard@ined.fr>
         parameter ftolpl is now an outer parameter of the .imach parameter  
         file after estepm. If ftolpl is small 1.e-4 and estepm too,          * imach.c: Summary: temporary save for backprojection
         computation are long.  
           * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
         * version.h: *** empty log message ***  
   2017-04-26  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: temporary  
           * imach.c: Summary: imach 0.99r13 Some bugs fixed
 2015-10-27  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Labels in graphs
         * Makefile: *** empty log message ***  
   2017-04-24  Brouard Nicolas  <brouard@ined.fr>
         * setup.iss.in: Summary: some new subdirs  
           * imach.c: Summary: to save
         * imach.c: *** empty log message ***  
   2017-04-18  Brouard Nicolas  <brouard@ined.fr>
         * setup.iss.in:  
         Summary: Adding gnuplot 5.1 with bin and etc for pango fonts          * imach.c: *** empty log message ***
   
 2015-10-24  Brouard Nicolas  <brouard@ined.fr>  2017-04-05  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
   
 2015-10-23  Brouard Nicolas  <brouard@ined.fr>  2017-04-04  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c:          * imach.c: Summary: Gnuplot indexations fixed (humm)
         Summary: 0.98r3 some clarification for graphs on likelihood contributions  
           * imach.c:
 2015-10-01  Brouard Nicolas  <brouard@ined.fr>          Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
   
         * imach.c: Summary: Some new graphs of contribution to likelihood  2017-04-03  Brouard Nicolas  <brouard@ined.fr>
   
 2015-09-30  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Version 0.99r12
           Some cleanings, conformed with updated documentation.
         * Makefile:  
         Summary: Version read from version.h, itself read with cmake  2017-03-30  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: looking at better estimation of the hessian          * version.h: *** empty log message ***
   
         Also a better criteria for convergence to the period prevalence And          * version.h: Summary:0.99r11
         therefore adding the number of years needed to converge. (The  
         prevalence in any alive state shold sum to one  2017-03-29  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile: *** empty log message ***          * imach.c: Summary: Temp
   
 2015-09-22  Brouard Nicolas  <brouard@ined.fr>  2017-03-27  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c:          * imach.c: Summary: Temporary
         Summary: Adding some overall graph on contribution to likelihood. Might change  
   2017-03-08  Brouard Nicolas  <brouard@ined.fr>
 2015-09-15  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
         * Makefile: *** empty log message ***  
           * imach.c: Summary: Fixing data parameter line
         * imach.c: Summary: 0.98r0  
   2016-12-15  Brouard Nicolas  <brouard@ined.fr>
         - Some new graphs like survival functions  
         - Some bugs fixed like model=1+age+V2.          * imach.c: Summary: 0.99 in progress
   
         * ChangeLog, Makefile: Summary: 0.98r0  2016-09-15  Brouard Nicolas  <brouard@ined.fr>
   
         * CMakeLists.txt: Summary: Some tests for setup.iss          * imach.c: *** empty log message ***
   
 2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>          * imach.c: Summary: not working
   
         *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc  2016-09-08  Brouard Nicolas  <brouard@ined.fr>
   
 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>          * imach.c: Summary: continue
   
         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.  2016-09-07  Brouard Nicolas  <brouard@ined.fr>
   
 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>          * imach.c: Summary: Starting values from frequencies
   
         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)          * imach.c: *** empty log message ***
   
 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>  2016-09-02  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Merging 1.61 to 1.162          * imach.c: *** empty log message ***
   
 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>  2016-08-30  Brouard Nicolas  <brouard@ined.fr>
   
         * prevlim.h (Module):          * imach.c: Summary: Fixing a lots
   
 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>  2016-08-29  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...          * imach.c: Summary: gnuplot problem in Back projection to fix
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.  
           * imach.c: Summary: Better
 2010-04-29  brouard  <brouard@ined.fr>  
   2016-08-26  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Checking covariates for more complex models  
         than V1+V2. A lot of change to be done. Unstable.          * imach.c:
           Summary: Improvement in Powell output in order to copy and paste
 2010-04-26  brouard  <brouard@ined.fr>  
           * imach.c: Summary: Starting tests of 0.99
         * imach.c (Module): merging some libgsl code. Fixing computation  
         of likelione (using inter/intrapolation if mle = 0) in order to          * imach.c: Summary: to valgrind
         get same likelihood as if mle=1.  
         Some cleaning of code and comments added.  2016-08-25  Brouard Nicolas  <brouard@ined.fr>
   
 2009-10-29  brouard  <brouard@ined.fr>          * imach.c: *** empty log message ***
   
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.  2016-08-23  Brouard Nicolas  <brouard@ined.fr>
   
 2006-06-30  Brouard Nicolas  <brouard@localhost>          * imach.c: *** empty log message ***
   
         * imach.c (Module): Clarifications on computing e.j          * imach.c: Summary: not working
   
 2006-04-28  Brouard Nicolas  <brouard@localhost>  2016-08-22  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Yes the sum of survivors was wrong since          * imach.c: Summary: not working
         imach-114 because nhstepm was no more computed in the age  
         loop. Now we define nhstepma in the age loop.          * imach.c: Summary: Not working
         (Module): In order to speed up (in case of numerous covariates) we  
         compute health expectancies (without variances) in a first step  2016-07-23  Brouard Nicolas  <brouard@ined.fr>
         and then all the health expectancies with variances or standard  
         deviation (needs data from the Hessian matrices) which slows the          * imach.c: Summary: Completing for func too
         computation.  
         In the future we should be able to stop the program is only health  2016-07-22  Brouard Nicolas  <brouard@ined.fr>
         expectancies and graph are needed without standard deviations.  
           * imach.c: Summary: Fixing some arrays, still debugging
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
   2016-07-21  Brouard Nicolas  <brouard@ined.fr>
         * imach.iss (Module):  
           * imach.c:
         * imach.c (Module): bugs in evsi + population file added in htm output file          Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
   
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  2016-07-12  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module):          * imach.c: Summary: temp
   
 2006-03-20  Brouard Nicolas  <brouard@localhost>          * imach.c: Summary: saving but not running
   
         * imach.c (Module): <title> changed, corresponds to .htm file  2016-07-01  Brouard Nicolas  <brouard@ined.fr>
         name. <head> headers where missing.  
           * imach.c: Summary: Fixes
         * Makefile (Module): 0.98g  
   2016-02-19  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Weights can have a decimal point as for  
         English (a comma might work with a correct LC_NUMERIC environment,          * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
         otherwise the weight is truncated).  
         Modification of warning when the covariates values are not 0 or          * setup.iss, Makefile, version.h: *** empty log message ***
         1.  
         Version 0.98g          * imach.c: Summary: temporary
   
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  2016-02-17  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Comments concerning covariates added          * imach.c: Summary: Probably last 0.98 stable version 0.98r6
   
         * noreg-setup.iss (Module): Version 0.98f  2016-02-16  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup          * imach.c: Summary: minor bug
   
         * imach.c (Module): refinements in the computation of lli if          * imach.c: Summary: 0.99r2
         status=-2 in order to have more reliable computation if stepm is  
         not 1 month. Version 0.98f  2016-02-15  Brouard Nicolas  <brouard@ined.fr>
   
 2006-03-15  Brouard Nicolas  <brouard@localhost>          * imach.c: *** empty log message ***
   
         * imach.c (Module): Bug if status = -2, the loglikelihood was  2016-02-12  Brouard Nicolas  <brouard@ined.fr>
         computed as likelihood omitting the logarithm. Version O.98e  
           * imach.c: Summary: 0.99 Back projections
 2006-03-14  Brouard Nicolas  <brouard@localhost>  
   2015-12-23  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): varevsij Comments added explaining the second  
         table of variances if popbased=1 .          * imach.c: Summary: Experimental backcast
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.  
         (Module): Function pstamp added  2015-12-18  Brouard Nicolas  <brouard@ined.fr>
         (Module): Version 0.98d  
           * imach.c: Summary: 0.98r4 Warning and status=-2
 2006-03-06  Brouard Nicolas  <brouard@localhost>  
           Version 0.98r4 is now:
         * imach.c (Module): Variance-covariance wrong links and           - displaying an error when status is -1, date of interview unknown and date of death known;
         varian-covariance of ej. is needed (Saito).           - permitting a status -2 when the vital status is unknown at a known date of right truncation.
           Older changes concerning s=-2, dating from 2005 have been supersed.
 2006-02-27  Brouard Nicolas  <brouard@localhost>  
           * Makefile: *** empty log message ***
         * imach.c (Module): One freematrix added in mlikeli!  
   2015-12-16  Brouard Nicolas  <brouard@ined.fr>
 2006-02-26  Brouard Nicolas  <brouard@localhost>  
           * Makefile: *** empty log message ***
         * imach.c (Module): Some improvements in processing parameter  
         filename with strsep.          * imach.c: Summary: 0.98r4 working
   
 2006-02-24  Brouard Nicolas  <brouard@localhost>          * Makefile: Summary: linuxrpm added
   
         * imach.c (Module): Memory leaks checks with valgrind and:          * Makefile: *** empty log message ***
         datafile was not closed, some imatrix were not freed and on matrix  
         allocation too.          * imach.c: Summary: temporary not working
   
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  2015-12-11  Brouard Nicolas  <brouard@ined.fr>
   
         * strsep.c (Module): Inclusion because not in mingw32!!!          * imach.c: Summary: 0.98r4
   
         * setup.iss.in (Module): IMACHSETUPVERSION added  2015-12-08  Brouard Nicolas  <brouard@ined.fr>
   
         * noreg-setup.iss (Module): added to cvs tree          * Makefile: *** empty log message ***
   
         * Makefile (Module): IMACHSETUPVERSION added  2015-11-21  Brouard Nicolas  <brouard@ined.fr>
   
 2006-01-30  BROUARD Nicolas  <brouard@localhost>          * Makefile:
           Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
         * Makefile (Module, Module): Latest Makefile  
           * imach.c: Summary: minor typo
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe  
           * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
 2006-01-27  BROUARD Nicolas  <brouard@localhost>  
           Author: Nicolas Brouard
         * noreg-setup.iss (Module): ADDED  
   2015-11-18  Brouard Nicolas  <brouard@ined.fr>
 2006-01-24  BROUARD Nicolas  <brouard@localhost>  
           * imach.c: Summary: Start working on projected prevalences
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.  
   2015-11-17  Brouard Nicolas  <brouard@ined.fr>
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>  
           * imach.c: Summary: Adding ftolpl parameter
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg          Author: N Brouard
   
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X          We had difficulties to get smoothed confidence intervals. It was due
           to the period prevalence which wasn't computed accurately. The inner
 2005-09-30    <lievre@PC_00595>          parameter ftolpl is now an outer parameter of the .imach parameter
           file after estepm. If ftolpl is small 1.e-4 and estepm too,
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.          computation are long.
         (Module): If the status is missing at the last wave but we know  
         that the person is alive, then we can code his/her status as -2          * version.h: *** empty log message ***
         (instead of missing=-1 in earlier versions) and his/her  
         contributions to the likelihood is 1 - Prob of dying from last          * imach.c: Summary: temporary
         health status (= 1-p13= p11+p12 in the easiest case of somebody in  
         the healthy state at last known wave). Version is 0.98  2015-10-27  Brouard Nicolas  <brouard@ined.fr>
   
 2004-05-20  Brouard Nicolas  <brouard@localhost>          * Makefile: *** empty log message ***
   
         * imach.c (Repository):          * setup.iss.in: Summary: some new subdirs
         Agnes added a direct estimation of mortality (without the need of  
         computing period prevalence and differential mortality). Thus here          * imach.c: *** empty log message ***
         is version 0.97a which has been distributed to some people at  
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of          * setup.iss.in:
         mortality using covariates is not done today. Estimating direct          Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
         mortality is a very different process because it doesn't need  
         interpolation because it is easy to get the lx from the force of  2015-10-24  Brouard Nicolas  <brouard@ined.fr>
         the mortality mux in the simplest case as for a Gompertz (log mux  
         = a + b*x . But we have been able to incorporate the new code          * imach.c: *** empty log message ***
         within former imach program (0.96d) without deteriorating too much  
         the understanding of the program.  2015-10-23  Brouard Nicolas  <brouard@ined.fr>
   
 2003-06-25    <brouard@BROUARD>          * imach.c:
           Summary: 0.98r3 some clarification for graphs on likelihood contributions
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't  
         exist so I changed back to asctime which exists.  2015-10-01  Brouard Nicolas  <brouard@ined.fr>
         (Module): Version 0.96b  
           * imach.c: Summary: Some new graphs of contribution to likelihood
 2003-06-24    <brouard@BROUARD>  
   2015-09-30  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Some bugs corrected for windows. Also, when  
         mle=-1 a template is output in file "or"mypar.txt with the design          * Makefile:
         of the covariance matrix to be input.          Summary: Version read from version.h, itself read with cmake
   
 2003-06-25  Brouard Nicolas  <brouard@homebrou>          * imach.c: Summary: looking at better estimation of the hessian
   
         * imach.c (Repository): Duplicated warning errors corrected.          Also a better criteria for convergence to the period prevalence And
         (Repository): Elapsed time after each iteration is now output. It          therefore adding the number of years needed to converge. (The
         helps to forecast when convergence will be reached. Elapsed time          prevalence in any alive state shold sum to one
         is stamped in powell.  We created a new html file for the graphs  
         concerning matrix of covariance. It has extension -cov.htm.          * Makefile: *** empty log message ***
   
 2003-06-23  Brouard Nicolas  <brouard@homebrou>  2015-09-22  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.          * imach.c:
           Summary: Adding some overall graph on contribution to likelihood. Might change
 2003-06-18  Brouard Nicolas  <brouard@homebrou>  
   2015-09-15  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96  
           * Makefile: *** empty log message ***
 2003-06-17  Brouard Nicolas  <brouard@homebrou>  
           * imach.c: Summary: 0.98r0
   
         * imach.c (Repository): Check when date of death was earlier that          - Some new graphs like survival functions
         current date of interview. It may happen when the death was just          - Some bugs fixed like model=1+age+V2.
         prior to the death. In this case, dh was negative and likelihood  
         was wrong (infinity). We still send an "Error" but patch by          * ChangeLog, Makefile: Summary: 0.98r0
         assuming that the date of death was just one stepm after the  
         interview.          * CMakeLists.txt: Summary: Some tests for setup.iss
         (Repository): Because some people have very long ID (first column)  
         we changed int to long in num[] and we added a new lvector for  2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         memory allocation. But we also truncated to 8 characters (left  
         truncation)          *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
   
         (Repository): No more line truncation errors.  2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
   
 2003-06-14  Brouard Nicolas  <brouard@homebrou>          *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
   
         * imach.c (Repository): Add of a routine likelione (likelihood  2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         only once) which prints on a text file  
         (ilk) the contributions to the likelihood for each          *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
         individual/wave.  
   2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
 2003-06-13  Brouard Nicolas  <brouard@homebrou>  
         * imach.c (Repository): Replace "freqsummary" at a correct          * imach.c (Module): Merging 1.61 to 1.162
         place. It differs from routine "prevalence" which may be called  
         many times. Probs is memory consuming and must be used with  2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
         parcimony.  
           * prevlim.h (Module): 
 2003-06-17    <brouard@BROUARD>  
   2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
         * timeval.h (Module): Added included file to make use of  
         gettimeofday working on win32 with cygwin.          * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
           (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
 2003-05-16  Brouard Nicolas  <brouard@brouard>  
         * imach.c (Module): Insert of a warning if the delay between two  2010-04-29  brouard  <brouard@ined.fr>
         waves is negative.  
           * imach.c (Module): Checking covariates for more complex models
         * imach.c (Module):          than V1+V2. A lot of change to be done. Unstable.
   
 2003-05-03    <brouard@BROUARD>  2010-04-26  brouard  <brouard@ined.fr>
   
         * imach.c: Some cleaning          * imach.c (Module): merging some libgsl code. Fixing computation
           of likelione (using inter/intrapolation if mle = 0) in order to
 2003-03-28    <brouard@BROUARD>          get same likelihood as if mle=1.
         * imach.c (Module): In version up to 0.92 likelihood was computed          Some cleaning of code and comments added.
         as if date of death was unknown. Death was treated as any other  
         health state: the date of the interview describes the actual state  2009-10-29  brouard  <brouard@ined.fr>
         and not the date of a change in health state. The former idea was  
         to consider that at each interview the state was recorded          * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
         (healthy, disable or death) and IMaCh was corrected; but when we  
         introduced the exact date of death then we should have modified  2006-06-30  Brouard Nicolas  <brouard@localhost>
         the contribution of an exact death to the likelihood. This new  
         contribution is smaller and very dependent of the step unit          * imach.c (Module): Clarifications on computing e.j
         stepm. It is no more the probability to die between last interview  
         and month of death but the probability to survive from last  2006-04-28  Brouard Nicolas  <brouard@localhost>
         interview up to one month before death multiplied by the  
         probability to die within a month. Thanks to Chris          * imach.c (Module): Yes the sum of survivors was wrong since
         Jackson for correcting this bug.  Former versions increased          imach-114 because nhstepm was no more computed in the age
         mortality artificially. The bad side is that we add another loop          loop. Now we define nhstepma in the age loop.
         which slows down the processing. The difference can be up to 10%          (Module): In order to speed up (in case of numerous covariates) we
         lower mortality.          compute health expectancies (without variances) in a first step
           and then all the health expectancies with variances or standard
 2002-05-30    <brouard@BROUARD>          deviation (needs data from the Hessian matrices) which slows the
         *          computation.
         * imach.c (Module): Add correlation matrix of one-step          In the future we should be able to stop the program is only health
         probabilities and covariance matrix          expectancies and graph are needed without standard deviations.
   
   2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.iss (Module): 
   
           * imach.c (Module): bugs in evsi + population file added in htm output file
   
   2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): 
   
   2006-03-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): <title> changed, corresponds to .htm file
           name. <head> headers where missing.
   
           * Makefile (Module): 0.98g
   
           * imach.c (Module): Weights can have a decimal point as for
           English (a comma might work with a correct LC_NUMERIC environment,
           otherwise the weight is truncated).
           Modification of warning when the covariates values are not 0 or
           1. 
           Version 0.98g
   
   2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): Comments concerning covariates added
   
           * noreg-setup.iss (Module): Version 0.98f
   
           * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
   
           * imach.c (Module): refinements in the computation of lli if
           status=-2 in order to have more reliable computation if stepm is
           not 1 month. Version 0.98f
   
   2006-03-15  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Bug if status = -2, the loglikelihood was
           computed as likelihood omitting the logarithm. Version O.98e
   
   2006-03-14  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): varevsij Comments added explaining the second
           table of variances if popbased=1 .
           (Module): Covariances of eij, ekl added, graphs fixed, new html link.
           (Module): Function pstamp added
           (Module): Version 0.98d 
   
   2006-03-06  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Variance-covariance wrong links and
           varian-covariance of ej. is needed (Saito).
   
   2006-02-27  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): One freematrix added in mlikeli!
   
   2006-02-26  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Some improvements in processing parameter
           filename with strsep.
   
   2006-02-24  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Memory leaks checks with valgrind and:
           datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
   
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * strsep.c (Module): Inclusion because not in mingw32!!!
   
           * setup.iss.in (Module): IMACHSETUPVERSION added
   
           * noreg-setup.iss (Module): added to cvs tree
   
           * Makefile (Module): IMACHSETUPVERSION added
   
   2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
           * Makefile (Module, Module): Latest Makefile
   
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
           * noreg-setup.iss (Module): ADDED
   
   2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
           * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
   2005-09-30    <lievre@PC_00595>
   
           * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
           that the person is alive, then we can code his/her status as -2
           (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
           health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98 
   
   2004-05-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Repository): 
           Agnes added a direct estimation of mortality (without the need of
           computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
           REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
           mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
           the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
           within former imach program (0.96d) without deteriorating too much
           the understanding of the program. 
   
   2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module): 
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
           which slows down the processing. The difference can be up to 10%
           lower mortality.
   
   2002-05-30    <brouard@BROUARD>
   
           * imach.c (Module): Add correlation matrix of one-step
           probabilities and covariance matrix
   

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changed lines
  Added in v.1.69


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