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Diff for /imach/src/ChangeLog between versions 1.33 and 1.59

version 1.33, 2010/04/30 18:19:29 version 1.59, 2022/09/04 17:40:02
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   2022-09-04  Nicolas Brouard   <brouard@ined.fr>
   
           * imach.c (Module): Now the easy runs i.e. without result or
           model=1+age only did not work. The defautl combination should be 1
           and not 0 because everything hasn't been tranformed yet.
   
   2022-09-02  Nicolas Brouard   <brouard@ined.fr>
   
           * imach.c: Version 0.99r35 because it outputs same results with
           1+age+V1+V1*age for females and 1+age for females only
           (education=1 noweight)
   
   2022-08-31  Nicolas Brouard   <brouard@ined.fr>
   
           * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
   
   2022-08-21  Nicolas Brouard   <brouard@ined.fr>
   
           * imach.c (Module): Version 0.99r33 A lot of changes in
           reassigning covariates: my first idea was that people will always
           use the first covariate V1 into the model but in fact they are
           producing data with many covariates and can use an equation model
           with some of the covariate; it means that in a model V2+V3 instead
           of codtabm(k,Tvaraff[j]) which calculates for combination k, for
           three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
           the equation model is restricted to two variables only (V2, V3)
           and the combination for V2 should be codtabm(k,1) instead of
           (codtabm(k,2), and the code should be
           codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
           made. All of these should be simplified once a day like we did in
           hpxij() for example by using precov[nres] which is computed in
           decoderesult for each nres of each resultline. Loop should be done
           on the equation model globally by distinguishing only product with
           age (which are changing with age) and no more on type of
           covariates, single dummies, single covariates. 
   
   2022-08-06  Nicolas Brouard   <brouard@ined.fr>
   
           *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
   
   2022-08-03  Nicolas Brouard   <brouard@ined.fr>
   
           *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
   
   2022-07-25  Brouard Nicolas  <brouard@brouard.name>
   
           * imach.c (Module): Error cptcovn instead of nsd in bmij (was
           coredumped, revealed by Feiuno, thank you.
   
   2022-07-23  Nicolas Brouard   <brouard@ined.fr>
   
           * r29 W and not sqrt(Wald)
   
   2022-07-22  Nicolas Brouard   <brouard@ined.fr>
   
           *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
   
   2022-06-02  Brouard Nicolas  <brouard@brouard.name>
   
           * imach.c (Module): Adding the Wald tests from the log to the main
           htm for better display of the maximum likelihood estimators.
   
   2022-05-30  Brouard Nicolas  <brouard@brouard.name>
   
           * imach.c: With products of covariates (age or dummies or
           quantitatives), estimates of parameters were good but when
           estimating variances the positions of newly created covariates
           were wrongly assigned and results were wrong. Thank to Feinua_Sun!
   
   2022-05-24  Nicolas Brouard   <brouard@ined.fr>
   
           * imach.c (Module): Some attempts to find a bug of wrong estimates
           of confidencce intervals with product in the equation modelC
   
   2022-05-15  Nicolas Brouard   <brouard@ined.fr>
   
           * imach.c (Module):  Some minor improvements
   
   2022-04-13  Brouard Nicolas  <brouard@brouard.name>
   
           * imach.c (Module): Adding link to text data files
   
   2022-04-11  Nicolas Brouard   <brouard@ined.fr>
   
           * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
   
   2022-04-05  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c (Module): Fixed covariates (dummy or quantitative)
           with missing values have never been allowed but are ERRORS and
           program quits. Standard deviations of fixed covariates were
           wrongly computed. Mean and standard deviations of time varying
           covariates are still not computed.
   
   2022-03-17  Brouard Nicolas  <brouard@ined.fr>
   
           * 99r25 Improvements in fixing discrepancies between covariates
           missing in result line but in model.
   
   *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
           * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
   
   *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
   
           * ./ (Module): Fixed bug on result:
   
   *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
   
           * imach.c (Module): Fix bug on quitting after result lines!
           (Module): Version 0.99r21
   
   2021-02-12  Nicolas Brouard   <brouard@ined.fr>
   
           * imach.c (Module): The use of a Windows BOM (huge) file is now an error
   
   
   2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
   
           *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
   
   2020-02-22  Brouard Nicolas  <brouard@ined.fr>
   
           *  (Module): imach.c Update mle=-3 (for computing Life expectancy
           and life table from the data without any state)
   
   2019-05-20  Brouard Nicolas  <brouard@ined.fr>
   
           * version.h: Summary: version 0.99.r19
   
           * imach.c: Summary: Projection syntax simplified
           We can now start projections, forward or backward, from the mean date
           of inteviews up to or down to a number of years of projection:
           prevforecast=1 yearsfproj=15.3 mobil_average=0
           or
           prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
           or
           prevbackcast=1 yearsbproj=12.3 mobil_average=1
           or
           prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
   
   2019-05-18  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: doxygen tex bug
   
   2019-05-16  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: There was some wrong lines added
   
   2019-05-09  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile, imach.c: *** empty log message ***
   
           * ChangeLog: Summary: C=
   
           * imach.c: Summary: Some updates
   
           * imach.c: Summary: Before ncovmax
   
           * version.h: *** empty log message ***
   
           * imach.c: Summary: 0.99r18 unlimited number of individuals
           The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
   
   2018-12-13  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Bug for young ages (<-30) will be in r17
   
   2018-12-05  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: Summary: 0.99r16
   
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Some bugs fixed
   
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:  Summary: Bug for young ages (<-30) will be in r17
   
   2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Some bugs fixed
   
   2018-05-01  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: Bug fixed by providing frequencies only for non missing covariates
   
   2018-04-27  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: some minor bugs
   
   2018-04-21  Brouard Nicolas  <brouard@ined.fr>
   
           * README.txt: *** empty log message ***
   
           * imach.c: Summary: Some bugs fixed, valgrind tested
   
   2018-04-20  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
   
           * imach.c:
           Summary: Computing mean and stdeviation of fixed quantitative variables
   
   2018-04-19  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Some minor bugs fixed
   
           * version.h: *** empty log message ***
   
   2018-02-27  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
           * imach.c: Summary: Adding second argument for quitting
   
   2018-02-21  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile, README.txt, imach.c: Summary: 0.99r15
           New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
   
   2017-07-20  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: temporary working
   
   2017-07-19  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
   
   2017-07-17  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: BOM files can be read now
   
   2017-06-30  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Graphs improvements
   
           * imach.c: Summary: Saito's color
   
   2017-06-29  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Version 0.99r14
   
   2017-06-27  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: More documentation on projections
   
           * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
   
           * imach.c: Summary: Some bug with rint
   
   2017-05-24  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2017-05-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Code into subroutine, cleanings
   
   2017-05-18  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: backprojection and confidence intervals of backprevalence
   
   2017-05-13  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: temporary save for backprojection
   
           * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
   
   2017-04-26  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: imach 0.99r13 Some bugs fixed
   
           * imach.c: Summary: Labels in graphs
   
   2017-04-24  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: to save
   
   2017-04-18  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2017-04-05  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
   
   2017-04-04  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Gnuplot indexations fixed (humm)
   
           * imach.c:
           Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
   
   2017-04-03  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Version 0.99r12
           Some cleanings, conformed with updated documentation.
   
   2017-03-30  Brouard Nicolas  <brouard@ined.fr>
   
           * version.h: *** empty log message ***
   
           * version.h: Summary:0.99r11
   
   2017-03-29  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Temp
   
   2017-03-27  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Temporary
   
   2017-03-08  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
   
           * imach.c: Summary: Fixing data parameter line
   
   2016-12-15  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: 0.99 in progress
   
   2016-09-15  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
           * imach.c: Summary: not working
   
   2016-09-08  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: continue
   
   2016-09-07  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Starting values from frequencies
   
           * imach.c: *** empty log message ***
   
   2016-09-02  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2016-08-30  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Fixing a lots
   
   2016-08-29  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: gnuplot problem in Back projection to fix
   
           * imach.c: Summary: Better
   
   2016-08-26  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: Improvement in Powell output in order to copy and paste
   
           * imach.c: Summary: Starting tests of 0.99
   
           * imach.c: Summary: to valgrind
   
   2016-08-25  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2016-08-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
           * imach.c: Summary: not working
   
   2016-08-22  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: not working
   
           * imach.c: Summary: Not working
   
   2016-07-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Completing for func too
   
   2016-07-22  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Fixing some arrays, still debugging
   
   2016-07-21  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
   
   2016-07-12  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: temp
   
           * imach.c: Summary: saving but not running
   
   2016-07-01  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Fixes
   
   2016-02-19  Brouard Nicolas  <brouard@ined.fr>
   
           * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
   
           * setup.iss, Makefile, version.h: *** empty log message ***
   
           * imach.c: Summary: temporary
   
   2016-02-17  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Probably last 0.98 stable version 0.98r6
   
   2016-02-16  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: minor bug
   
           * imach.c: Summary: 0.99r2
   
   2016-02-15  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2016-02-12  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: 0.99 Back projections
   
   2015-12-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Experimental backcast
   
   2015-12-18  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: 0.98r4 Warning and status=-2
   
           Version 0.98r4 is now:
            - displaying an error when status is -1, date of interview unknown and date of death known;
            - permitting a status -2 when the vital status is unknown at a known date of right truncation.
           Older changes concerning s=-2, dating from 2005 have been supersed.
   
           * Makefile: *** empty log message ***
   
   2015-12-16  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: *** empty log message ***
   
           * imach.c: Summary: 0.98r4 working
   
           * Makefile: Summary: linuxrpm added
   
           * Makefile: *** empty log message ***
   
           * imach.c: Summary: temporary not working
   
   2015-12-11  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: 0.98r4
   
   2015-12-08  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: *** empty log message ***
   
   2015-11-21  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile:
           Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
   
           * imach.c: Summary: minor typo
   
           * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
   
           Author: Nicolas Brouard
   
   2015-11-18  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Start working on projected prevalences
   
   2015-11-17  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Adding ftolpl parameter
           Author: N Brouard
   
           We had difficulties to get smoothed confidence intervals. It was due
           to the period prevalence which wasn't computed accurately. The inner
           parameter ftolpl is now an outer parameter of the .imach parameter
           file after estepm. If ftolpl is small 1.e-4 and estepm too,
           computation are long.
   
           * version.h: *** empty log message ***
   
           * imach.c: Summary: temporary
   
   2015-10-27  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: *** empty log message ***
   
           * setup.iss.in: Summary: some new subdirs
   
           * imach.c: *** empty log message ***
   
           * setup.iss.in:
           Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
   
   2015-10-24  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: *** empty log message ***
   
   2015-10-23  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: 0.98r3 some clarification for graphs on likelihood contributions
   
   2015-10-01  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c: Summary: Some new graphs of contribution to likelihood
   
   2015-09-30  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile:
           Summary: Version read from version.h, itself read with cmake
   
           * imach.c: Summary: looking at better estimation of the hessian
   
           Also a better criteria for convergence to the period prevalence And
           therefore adding the number of years needed to converge. (The
           prevalence in any alive state shold sum to one
   
           * Makefile: *** empty log message ***
   
   2015-09-22  Brouard Nicolas  <brouard@ined.fr>
   
           * imach.c:
           Summary: Adding some overall graph on contribution to likelihood. Might change
   
   2015-09-15  Brouard Nicolas  <brouard@ined.fr>
   
           * Makefile: *** empty log message ***
   
           * imach.c: Summary: 0.98r0
   
           - Some new graphs like survival functions
           - Some bugs fixed like model=1+age+V2.
   
           * ChangeLog, Makefile: Summary: 0.98r0
   
           * CMakeLists.txt: Summary: Some tests for setup.iss
   
   2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
           *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
   
   2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
   
           *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
   
   2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
   
           *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
   
   2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
   
           * imach.c (Module): Merging 1.61 to 1.162
   
   2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
   
           * prevlim.h (Module):
   
   2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
   
           * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
           (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
   
 2010-04-29  brouard  <brouard@ined.fr>  2010-04-29  brouard  <brouard@ined.fr>
   
         * imach.c (Module): Checking covariates for more complex models          * imach.c (Module): Checking covariates for more complex models
Line 243 Line 817
         probability to die within a month. Thanks to Chris          probability to die within a month. Thanks to Chris
         Jackson for correcting this bug.  Former versions increased          Jackson for correcting this bug.  Former versions increased
         mortality artificially. The bad side is that we add another loop          mortality artificially. The bad side is that we add another loop
   
   
         which slows down the processing. The difference can be up to 10%          which slows down the processing. The difference can be up to 10%
   
   
         lower mortality.          lower mortality.
   
   
   
   
   
 2002-05-30    <brouard@BROUARD>  2002-05-30    <brouard@BROUARD>
   
   
   
   
   
         *  
   
   
   
   
   
         * imach.c (Module): Add correlation matrix of one-step          * imach.c (Module): Add correlation matrix of one-step
   
   
         probabilities and covariance matrix          probabilities and covariance matrix
   
   
   
   
   
Removed from v.1.33  
changed lines
  Added in v.1.59

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