[BACK]Return to ChangeLog CVS log [TXT] [DIR] Up to [Local Repository] / imach / src

Diff for /imach/src/ChangeLog between versions 1.48 and 1.73

version 1.48, 2022/04/05 21:11:15 version 1.73, 2024/07/02 13:25:47
Line 1 Line 1
 2022-04-05  Brouard Nicolas  <brouard@ined.fr>  2024-07-02  Nicolas Brouard  <brouard@ined.fr>
   
         * imach.c (Module): Fixed covariates (dummy or quantitative)          * imach.c (Module): Trying compiling on Linux with clang (instead
         with missing values have never been allowed but are ERRORS and          of gcc which is too slow) and lot of warnings suppressed
         program quits. Standard deviations of fixed covariates were  
         wrongly computed. Mean and standard deviations of time varying  2024-06-28  Nicolas Brouard   <brouard@ined.fr>
         covariates are still not computed.  
           * imach.c (Module): fixing some bugs in gnuplot and quantitative variables, but not completely solved
 2022-03-17  Brouard Nicolas  <brouard@ined.fr>  
   2024-06-28  Nicolas Brouard  <brouard@ined.fr>
         * 99r25 Improvements in fixing discrepancies between covariates  
         missing in result line but in model.          * imach.c (Module): s6 errors with age*age (harmless).
   
 *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>  2024-05-12  Nicolas Brouard   <brouard@ined.fr>
         * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett  
           * imach.c Version 0.99s5 In fact, the covariance of total life
 *2021-03-08  Nicolas Brouard   <brouard@ined.fr>          expectancy e.. with a partial life expectancy e.j is high,
           therefore the complete matrix of variance covariance has to be
         * ./ (Module): Fixed bug on result:          included in the formula of the standard error of the proportion of
           total life expectancy spent in a specific state:
 *2021-02-20  Nicolas Brouard   <brouard@ined.fr>          var(X/Y)=mu_x^2/mu_y^2*(sigma_x^2/mu_x^2 -2
           sigma_xy/mu_x/mu_y+sigma^2/mu_y^2).  Also an error with mle=-3
         * imach.c (Module): Fix bug on quitting after result lines!          made the program core dump. It is fixed in this version.
         (Module): Version 0.99r21  
   2024-04-30  Nicolas Brouard   <brouard@ined.fr>
 2021-02-12  Nicolas Brouard   <brouard@ined.fr>  
           * (Module): In version 0.99s4, we incorporated the calculation of
         * imach.c (Module): The use of a Windows BOM (huge) file is now an error          the std error of the proportion of total life expectancy spent in
           a specific state Var(e.j/e..) using the formula of Var(X/Y)
           depending only of the variances of X and Y and expectancies.
 2021-02-11  Nicolas  Brouard   <brouard@ined.fr>  
   2024-04-24  Nicolas Brouard   <brouard@ined.fr>
         *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.  
           * (Module): This version comes late after having tested
 2020-02-22  Brouard Nicolas  <brouard@ined.fr>          successfully the praxis C version of Buckhardt.  But Buckardt's
           version was difficult to read and Gegenfurtner's version had a few
         *  (Module): imach.c Update mle=-3 (for computing Life expectancy          typos which made its results less reliable than Buckhardt's
         and life table from the data without any state)          results.  The most important work consisted in retyping the Brent
           original PRAXIS program written in Algol W (published with errors,
 2019-05-20  Brouard Nicolas  <brouard@ined.fr>          ommitting the transposition of matrix V before its QR reduction
           from Golub. I used the recent "awe" compiler from Gkynn Webster.
         * version.h: Summary: version 0.99.r19          The awe library had errors, for example in arc tangent function
           which have been fixed.
         * imach.c: Summary: Projection syntax simplified  
         We can now start projections, forward or backward, from the mean date          The main objective was to get identical results with the three
         of inteviews up to or down to a number of years of projection:          versions: (1) Algol W, (2) Buckhardt'C version as well (3)
         prevforecast=1 yearsfproj=15.3 mobil_average=0          Gegenfürtner C versions on the various test functions published by
         or          Brent in 1973 in Algol W.
         prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0  
         or          Also, in order to compare them, the random function had to produce
         prevbackcast=1 yearsbproj=12.3 mobil_average=1          the same sequence for the 3 softwares. The random function used in
         or          imach corresponds to original Brent's random function written in
         prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1          Algol W.  Other point, in Algol W, the arrays of dimension n are
           'normal' mathematical arrays starting from 1 to n. But this is a
 2019-05-18  Brouard Nicolas  <brouard@ined.fr>          real issue in C where, by default, arrays are starting from 0 to
           n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
         * imach.c: Summary: doxygen tex bug          seen that authors while trying to mimick original Brent Algol W
           code are hesitating by changing either a loop originally from 1 to
 2019-05-16  Brouard Nicolas  <brouard@ined.fr>          n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
           shifting the index from original X(I) in Algol W to x[i-1] in C.
         * imach.c: Summary: There was some wrong lines added          But as IMaCh is using, since the beginning, the Numerical Recipes
           functions vector or matrix, I changed Geggenfürtner code to mimick
 2019-05-09  Brouard Nicolas  <brouard@ined.fr>          the original Algol W arrays. Thus the X(I) is translated in C as
           x[i] which minimizes the errors. The Golub QR algorithm was
         * Makefile, imach.c: *** empty log message ***          published in Algol with overflow errors which were reproduced in
           Brent's Algol W code. Buckhardt code fixed these errors which are
         * ChangeLog: Summary: C=          much more problematic in C than in Algol W.  Thus Buckhardt code
           seems very safe, but i haven't chosen it for IMaCh because the C
         * imach.c: Summary: Some updates          style is horrible and almost unreadable compared to Gegenfürtner
           CO code which is very close to Brent's original. Also what makes
         * imach.c: Summary: Before ncovmax          Buckhardt code more difficult to read is, instead of passing the
           minimum of parameters in the functions calls, as it is in Algol
         * version.h: *** empty log message ***          Brent's code or Gegenfürtner's code, the list of parameters is
           high. For example, the flin function LONG REAL PROCEDURE FLIN
         * imach.c: Summary: 0.99r18 unlimited number of individuals          (LONG REAL VALUE L) has only one parameter in Algol W, the
         The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.          Gegenfürtner flin function had two parameters: static double
           flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
 2018-12-13  Brouard Nicolas  <brouard@ined.fr>          function has 14 parameters which makes the code unreadable and
           useless. Gegenfürtner used a lot of static variables or functions
         * imach.c: Summary: Bug for young ages (<-30) will be in r17          which I tried to minimize. Also in Gegefürtner, array dimensions
           were fixed to N. In my adaptation the flin is static double
 2018-12-05  Brouard Nicolas  <brouard@ined.fr>          flin(double l, int j) and the parameter used are global variables.
   
         * Makefile: Summary: 0.99r16  2023-06-14  Nicolas Brouard   <brouard@ined.fr>
   
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Testing if conjugate gradient could be quicker
           when lot of variables POWELLORIGINCONJUGATE
         * imach.c: Summary: Some bugs fixed  
   2023-05-23  Nicolas Brouard   <brouard@ined.fr>
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Fixed PROB_r 
         * imach.c:  Summary: Bug for young ages (<-30) will be in r17  
   2023-05-22  Nicolas Brouard   <brouard@ined.fr>
 2018-05-02  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): In the ILK....txt file, the number of columns
         * imach.c: Summary: Some bugs fixed          before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
   
 2018-05-01  Brouard Nicolas  <brouard@ined.fr>  2023-05-08  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c:          *  (Module): Error V0 when result:. and model 1+age+V1: fixed
         Summary: Bug fixed by providing frequencies only for non missing covariates  
   2023-04-29  Nicolas Brouard  <brouard@ined.fr>
 2018-04-27  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Inverting the model equation and fixingg bugs
         * imach.c: Summary: some minor bugs          in the drawings
           "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
 2018-04-21  Brouard Nicolas  <brouard@ined.fr>  
   2023-04-24  Nicolas Brouard  <brouard@ined.fr>
         * README.txt: *** empty log message ***  
           * imach.c (Module): some bugs in printinggnuplot 
         * imach.c: Summary: Some bugs fixed, valgrind tested  
   2022-09-19  Nicolas Brouard   <brouard@ined.fr>
 2018-04-20  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Version 0.99r42 needed a newer version of
         * Makefile, README.txt, setup.iss: Summary: imach 0.99r16          Gnuplot. But newer version 0.99r43 should run with the Gnuplot
           version 5.0 or 5.1 distributed with IMaCh.
         * imach.c:  
         Summary: Computing mean and stdeviation of fixed quantitative variables  2022-09-18  Nicolas Brouard   <brouard@ined.fr>
   
 2018-04-19  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Fixing when a state in the data is 0 or higher
           than lstate+ndeath. Fixing the plot of contribution to Likelihood.
         * imach.c: Summary: Some minor bugs fixed  
   2022-09-16  Nicolas Brouard   <brouard@ined.fr>
         * version.h: *** empty log message ***  
           * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you  Feinuo
 2018-02-27  Brouard Nicolas  <brouard@ined.fr>  
   2022-09-14  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
         * imach.c: Summary: Adding second argument for quitting  
   2022-09-14  Nicolas Brouard   <brouard@ined.fr>
 2018-02-21  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Version 0.99r39 with colored dummy covariates
         * Makefile, README.txt, imach.c: Summary: 0.99r15          (fixed or time varying), using new last columns of
         New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c          ILK_parameter.txt file.
   
 2017-07-20  Brouard Nicolas  <brouard@ined.fr>  2022-09-11  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: temporary working          * imach.c (Module): Adding timevarying products of any kinds,
           should work before shifting cotvar from ncovcol+nqv columns in
 2017-07-19  Brouard Nicolas  <brouard@ined.fr>          order to have a correspondance between the column of cotvar and
           the id of column.
         * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)          (Module): Some cleaning and adding covariates in ILK.txt
   
 2017-07-17  Brouard Nicolas  <brouard@ined.fr>  2022-09-09  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: BOM files can be read now          * imach.c (Module): Many improvements for fixing products of fixed
           timevarying as well as fixed * fixed, and test with quantitative
 2017-06-30  Brouard Nicolas  <brouard@ined.fr>          covariate.
   
         * imach.c: Summary: Graphs improvements  2022-09-04  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Saito's color          * imach.c (Module): Now the easy runs i.e. without result or
           model=1+age only did not work. The defautl combination should be 1
 2017-06-29  Brouard Nicolas  <brouard@ined.fr>          and not 0 because everything hasn't been tranformed yet.
   
         * imach.c: Summary: Version 0.99r14  2022-09-02  Nicolas Brouard   <brouard@ined.fr>
   
 2017-06-27  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Version 0.99r35 because it outputs same results with
           1+age+V1+V1*age for females and 1+age for females only
         * imach.c: Summary: More documentation on projections          (education=1 noweight)
   
         * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)  2022-08-31  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Some bug with rint          * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
   
 2017-05-24  Brouard Nicolas  <brouard@ined.fr>  2022-08-21  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: *** empty log message ***          * imach.c (Module): Version 0.99r33 A lot of changes in
           reassigning covariates: my first idea was that people will always
 2017-05-23  Brouard Nicolas  <brouard@ined.fr>          use the first covariate V1 into the model but in fact they are
           producing data with many covariates and can use an equation model
         * imach.c: Summary: Code into subroutine, cleanings          with some of the covariate; it means that in a model V2+V3 instead
           of codtabm(k,Tvaraff[j]) which calculates for combination k, for
 2017-05-18  Brouard Nicolas  <brouard@ined.fr>          three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
           the equation model is restricted to two variables only (V2, V3)
         * imach.c:          and the combination for V2 should be codtabm(k,1) instead of
         Summary: backprojection and confidence intervals of backprevalence          (codtabm(k,2), and the code should be
           codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
 2017-05-13  Brouard Nicolas  <brouard@ined.fr>          made. All of these should be simplified once a day like we did in
           hpxij() for example by using precov[nres] which is computed in
         * imach.c: Summary: temporary save for backprojection          decoderesult for each nres of each resultline. Loop should be done
           on the equation model globally by distinguishing only product with
         * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)          age (which are changing with age) and no more on type of
           covariates, single dummies, single covariates. 
 2017-04-26  Brouard Nicolas  <brouard@ined.fr>  
   2022-08-06  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: imach 0.99r13 Some bugs fixed  
           *  imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
         * imach.c: Summary: Labels in graphs  
   2022-08-03  Nicolas Brouard   <brouard@ined.fr>
 2017-04-24  Brouard Nicolas  <brouard@ined.fr>  
           *  imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
         * imach.c: Summary: to save  
   2022-07-25  Brouard Nicolas  <brouard@brouard.name>
 2017-04-18  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Error cptcovn instead of nsd in bmij (was
         * imach.c: *** empty log message ***          coredumped, revealed by Feiuno, thank you.
   
 2017-04-05  Brouard Nicolas  <brouard@ined.fr>  2022-07-23  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1          * r29 W and not sqrt(Wald)
   
 2017-04-04  Brouard Nicolas  <brouard@ined.fr>  2022-07-22  Nicolas Brouard   <brouard@ined.fr>
   
         * imach.c: Summary: Gnuplot indexations fixed (humm)          *  imach.c (Module): Output of Wald test in the htm file and not only in the log. 
   
         * imach.c:  2022-06-02  Brouard Nicolas  <brouard@brouard.name>
         Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3  
           * imach.c (Module): Adding the Wald tests from the log to the main
 2017-04-03  Brouard Nicolas  <brouard@ined.fr>          htm for better display of the maximum likelihood estimators.
   
         * imach.c: Summary: Version 0.99r12  2022-05-30  Brouard Nicolas  <brouard@brouard.name>
         Some cleanings, conformed with updated documentation.  
           * imach.c: With products of covariates (age or dummies or
 2017-03-30  Brouard Nicolas  <brouard@ined.fr>          quantitatives), estimates of parameters were good but when
           estimating variances the positions of newly created covariates
         * version.h: *** empty log message ***          were wrongly assigned and results were wrong. Thank to Feinua_Sun!
   
         * version.h: Summary:0.99r11  2022-05-24  Nicolas Brouard   <brouard@ined.fr>
   
 2017-03-29  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): Some attempts to find a bug of wrong estimates
           of confidencce intervals with product in the equation modelC
         * imach.c: Summary: Temp  
   2022-05-15  Nicolas Brouard   <brouard@ined.fr>
 2017-03-27  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module):  Some minor improvements
         * imach.c: Summary: Temporary  
   2022-04-13  Brouard Nicolas  <brouard@brouard.name>
 2017-03-08  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c (Module): Adding link to text data files
         * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed  
   2022-04-11  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: Summary: Fixing data parameter line  
           * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
 2016-12-15  Brouard Nicolas  <brouard@ined.fr>  
   2022-04-05  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.99 in progress  
           * imach.c (Module): Fixed covariates (dummy or quantitative)
 2016-09-15  Brouard Nicolas  <brouard@ined.fr>          with missing values have never been allowed but are ERRORS and
           program quits. Standard deviations of fixed covariates were
         * imach.c: *** empty log message ***          wrongly computed. Mean and standard deviations of time varying
           covariates are still not computed.
         * imach.c: Summary: not working  
   2022-03-17  Brouard Nicolas  <brouard@ined.fr>
 2016-09-08  Brouard Nicolas  <brouard@ined.fr>  
           * 99r25 Improvements in fixing discrepancies between covariates
         * imach.c: Summary: continue          missing in result line but in model. 
   
 2016-09-07  Brouard Nicolas  <brouard@ined.fr>  *Wed Mar 31 2021  Nicolas Brouard   <brouard@ined.fr>
           * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
         * imach.c: Summary: Starting values from frequencies  
   *2021-03-08  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * ./ (Module): Fixed bug on result:
 2016-09-02  Brouard Nicolas  <brouard@ined.fr>  
   *2021-02-20  Nicolas Brouard   <brouard@ined.fr>
         * imach.c: *** empty log message ***  
           * imach.c (Module): Fix bug on quitting after result lines!
 2016-08-30  Brouard Nicolas  <brouard@ined.fr>          (Module): Version 0.99r21
   
         * imach.c: Summary: Fixing a lots  2021-02-12  Nicolas Brouard   <brouard@ined.fr>
   
 2016-08-29  Brouard Nicolas  <brouard@ined.fr>          * imach.c (Module): The use of a Windows BOM (huge) file is now an error
   
         * imach.c: Summary: gnuplot problem in Back projection to fix  
   2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
         * imach.c: Summary: Better  
           *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
 2016-08-26  Brouard Nicolas  <brouard@ined.fr>  
   2020-02-22  Brouard Nicolas  <brouard@ined.fr>
         * imach.c:  
         Summary: Improvement in Powell output in order to copy and paste          *  (Module): imach.c Update mle=-3 (for computing Life expectancy
           and life table from the data without any state)
         * imach.c: Summary: Starting tests of 0.99  
   2019-05-20  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: to valgrind  
           * version.h: Summary: version 0.99.r19
 2016-08-25  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: Projection syntax simplified
         * imach.c: *** empty log message ***          We can now start projections, forward or backward, from the mean date
           of inteviews up to or down to a number of years of projection:
 2016-08-23  Brouard Nicolas  <brouard@ined.fr>          prevforecast=1 yearsfproj=15.3 mobil_average=0
           or
         * imach.c: *** empty log message ***          prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
           or
         * imach.c: Summary: not working          prevbackcast=1 yearsbproj=12.3 mobil_average=1
           or
 2016-08-22  Brouard Nicolas  <brouard@ined.fr>          prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
   
         * imach.c: Summary: not working  2019-05-18  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Not working          * imach.c: Summary: doxygen tex bug
   
 2016-07-23  Brouard Nicolas  <brouard@ined.fr>  2019-05-16  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Completing for func too          * imach.c: Summary: There was some wrong lines added
   
 2016-07-22  Brouard Nicolas  <brouard@ined.fr>  2019-05-09  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Fixing some arrays, still debugging          * Makefile, imach.c: *** empty log message ***
   
 2016-07-21  Brouard Nicolas  <brouard@ined.fr>          * ChangeLog: Summary: C=
   
         * imach.c:          * imach.c: Summary: Some updates
         Summary: 0.99 working (more or less) for Asian Workshop on multitate methods  
           * imach.c: Summary: Before ncovmax
 2016-07-12  Brouard Nicolas  <brouard@ined.fr>  
           * version.h: *** empty log message ***
         * imach.c: Summary: temp  
           * imach.c: Summary: 0.99r18 unlimited number of individuals
         * imach.c: Summary: saving but not running          The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
   
 2016-07-01  Brouard Nicolas  <brouard@ined.fr>  2018-12-13  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Fixes          * imach.c: Summary: Bug for young ages (<-30) will be in r17
   
 2016-02-19  Brouard Nicolas  <brouard@ined.fr>  2018-12-05  Brouard Nicolas  <brouard@ined.fr>
   
         * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7          * Makefile: Summary: 0.99r16
   
         * setup.iss, Makefile, version.h: *** empty log message ***  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: temporary          * imach.c: Summary: Some bugs fixed
   
 2016-02-17  Brouard Nicolas  <brouard@ined.fr>  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: Probably last 0.98 stable version 0.98r6          * imach.c:  Summary: Bug for young ages (<-30) will be in r17
   
 2016-02-16  Brouard Nicolas  <brouard@ined.fr>  2018-05-02  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: minor bug          * imach.c: Summary: Some bugs fixed
   
         * imach.c: Summary: 0.99r2  2018-05-01  Brouard Nicolas  <brouard@ined.fr>
   
 2016-02-15  Brouard Nicolas  <brouard@ined.fr>          * imach.c:
           Summary: Bug fixed by providing frequencies only for non missing covariates
         * imach.c: *** empty log message ***  
   2018-04-27  Brouard Nicolas  <brouard@ined.fr>
 2016-02-12  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: some minor bugs
         * imach.c: Summary: 0.99 Back projections  
   2018-04-21  Brouard Nicolas  <brouard@ined.fr>
 2015-12-23  Brouard Nicolas  <brouard@ined.fr>  
           * README.txt: *** empty log message ***
         * imach.c: Summary: Experimental backcast  
           * imach.c: Summary: Some bugs fixed, valgrind tested
 2015-12-18  Brouard Nicolas  <brouard@ined.fr>  
   2018-04-20  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.98r4 Warning and status=-2  
           * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
         Version 0.98r4 is now:  
          - displaying an error when status is -1, date of interview unknown and date of death known;          * imach.c:
          - permitting a status -2 when the vital status is unknown at a known date of right truncation.          Summary: Computing mean and stdeviation of fixed quantitative variables
         Older changes concerning s=-2, dating from 2005 have been supersed.  
   2018-04-19  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * imach.c: Summary: Some minor bugs fixed
 2015-12-16  Brouard Nicolas  <brouard@ined.fr>  
           * version.h: *** empty log message ***
         * Makefile: *** empty log message ***  
   2018-02-27  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.98r4 working  
           * imach.c: *** empty log message ***
         * Makefile: Summary: linuxrpm added  
           * imach.c: Summary: Adding second argument for quitting
         * Makefile: *** empty log message ***  
   2018-02-21  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: temporary not working  
           * Makefile, README.txt, imach.c: Summary: 0.99r15
 2015-12-11  Brouard Nicolas  <brouard@ined.fr>          New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
   
         * imach.c: Summary: 0.98r4  2017-07-20  Brouard Nicolas  <brouard@ined.fr>
   
 2015-12-08  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: temporary working
   
         * Makefile: *** empty log message ***  2017-07-19  Brouard Nicolas  <brouard@ined.fr>
   
 2015-11-21  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
   
         * Makefile:  2017-07-17  Brouard Nicolas  <brouard@ined.fr>
         Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more  
           * imach.c: Summary: BOM files can be read now
         * imach.c: Summary: minor typo  
   2017-06-30  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional  
           * imach.c: Summary: Graphs improvements
         Author: Nicolas Brouard  
           * imach.c: Summary: Saito's color
 2015-11-18  Brouard Nicolas  <brouard@ined.fr>  
   2017-06-29  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Start working on projected prevalences  
           * imach.c: Summary: Version 0.99r14
 2015-11-17  Brouard Nicolas  <brouard@ined.fr>  
   2017-06-27  Brouard Nicolas  <brouard@ined.fr>
         * imach.c: Summary: Adding ftolpl parameter  
         Author: N Brouard          * imach.c: Summary: More documentation on projections
   
         We had difficulties to get smoothed confidence intervals. It was due          * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
         to the period prevalence which wasn't computed accurately. The inner  
         parameter ftolpl is now an outer parameter of the .imach parameter          * imach.c: Summary: Some bug with rint
         file after estepm. If ftolpl is small 1.e-4 and estepm too,  
         computation are long.  2017-05-24  Brouard Nicolas  <brouard@ined.fr>
   
         * version.h: *** empty log message ***          * imach.c: *** empty log message ***
   
         * imach.c: Summary: temporary  2017-05-23  Brouard Nicolas  <brouard@ined.fr>
   
 2015-10-27  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Code into subroutine, cleanings
   
         * Makefile: *** empty log message ***  2017-05-18  Brouard Nicolas  <brouard@ined.fr>
   
         * setup.iss.in: Summary: some new subdirs          * imach.c:
           Summary: backprojection and confidence intervals of backprevalence
         * imach.c: *** empty log message ***  
   2017-05-13  Brouard Nicolas  <brouard@ined.fr>
         * setup.iss.in:  
         Summary: Adding gnuplot 5.1 with bin and etc for pango fonts          * imach.c: Summary: temporary save for backprojection
   
 2015-10-24  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
   
         * imach.c: *** empty log message ***  2017-04-26  Brouard Nicolas  <brouard@ined.fr>
   
 2015-10-23  Brouard Nicolas  <brouard@ined.fr>          * imach.c: Summary: imach 0.99r13 Some bugs fixed
   
         * imach.c:          * imach.c: Summary: Labels in graphs
         Summary: 0.98r3 some clarification for graphs on likelihood contributions  
   2017-04-24  Brouard Nicolas  <brouard@ined.fr>
 2015-10-01  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: Summary: to save
         * imach.c: Summary: Some new graphs of contribution to likelihood  
   2017-04-18  Brouard Nicolas  <brouard@ined.fr>
 2015-09-30  Brouard Nicolas  <brouard@ined.fr>  
           * imach.c: *** empty log message ***
         * Makefile:  
         Summary: Version read from version.h, itself read with cmake  2017-04-05  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c: Summary: looking at better estimation of the hessian          * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
   
         Also a better criteria for convergence to the period prevalence And  2017-04-04  Brouard Nicolas  <brouard@ined.fr>
         therefore adding the number of years needed to converge. (The  
         prevalence in any alive state shold sum to one          * imach.c: Summary: Gnuplot indexations fixed (humm)
   
         * Makefile: *** empty log message ***          * imach.c:
           Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
 2015-09-22  Brouard Nicolas  <brouard@ined.fr>  
   2017-04-03  Brouard Nicolas  <brouard@ined.fr>
         * imach.c:  
         Summary: Adding some overall graph on contribution to likelihood. Might change          * imach.c: Summary: Version 0.99r12
           Some cleanings, conformed with updated documentation.
 2015-09-15  Brouard Nicolas  <brouard@ined.fr>  
   2017-03-30  Brouard Nicolas  <brouard@ined.fr>
         * Makefile: *** empty log message ***  
           * version.h: *** empty log message ***
         * imach.c: Summary: 0.98r0  
           * version.h: Summary:0.99r11
         - Some new graphs like survival functions  
         - Some bugs fixed like model=1+age+V2.  2017-03-29  Brouard Nicolas  <brouard@ined.fr>
   
         * ChangeLog, Makefile: Summary: 0.98r0          * imach.c: Summary: Temp
   
         * CMakeLists.txt: Summary: Some tests for setup.iss  2017-03-27  Brouard Nicolas  <brouard@ined.fr>
   
 2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>          * imach.c: Summary: Temporary
   
         *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc  2017-03-08  Brouard Nicolas  <brouard@ined.fr>
   
 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>          * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
   
         *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.          * imach.c: Summary: Fixing data parameter line
   
 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>  2016-12-15  Brouard Nicolas  <brouard@ined.fr>
   
         *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)          * imach.c: Summary: 0.99 in progress
   
 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>  2016-09-15  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Merging 1.61 to 1.162          * imach.c: *** empty log message ***
   
 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>          * imach.c: Summary: not working
   
         * prevlim.h (Module):  2016-09-08  Brouard Nicolas  <brouard@ined.fr>
   
 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>          * imach.c: Summary: continue
   
         * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...  2016-09-07  Brouard Nicolas  <brouard@ined.fr>
         (Module): Version 0.98nR Running ok, but output format still only works for three covariates.  
           * imach.c: Summary: Starting values from frequencies
 2010-04-29  brouard  <brouard@ined.fr>  
           * imach.c: *** empty log message ***
         * imach.c (Module): Checking covariates for more complex models  
         than V1+V2. A lot of change to be done. Unstable.  2016-09-02  Brouard Nicolas  <brouard@ined.fr>
   
 2010-04-26  brouard  <brouard@ined.fr>          * imach.c: *** empty log message ***
   
         * imach.c (Module): merging some libgsl code. Fixing computation  2016-08-30  Brouard Nicolas  <brouard@ined.fr>
         of likelione (using inter/intrapolation if mle = 0) in order to  
         get same likelihood as if mle=1.          * imach.c: Summary: Fixing a lots
         Some cleaning of code and comments added.  
   2016-08-29  Brouard Nicolas  <brouard@ined.fr>
 2009-10-29  brouard  <brouard@ined.fr>  
           * imach.c: Summary: gnuplot problem in Back projection to fix
         * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.  
           * imach.c: Summary: Better
 2006-06-30  Brouard Nicolas  <brouard@localhost>  
   2016-08-26  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Clarifications on computing e.j  
           * imach.c:
 2006-04-28  Brouard Nicolas  <brouard@localhost>          Summary: Improvement in Powell output in order to copy and paste
   
         * imach.c (Module): Yes the sum of survivors was wrong since          * imach.c: Summary: Starting tests of 0.99
         imach-114 because nhstepm was no more computed in the age  
         loop. Now we define nhstepma in the age loop.          * imach.c: Summary: to valgrind
         (Module): In order to speed up (in case of numerous covariates) we  
         compute health expectancies (without variances) in a first step  2016-08-25  Brouard Nicolas  <brouard@ined.fr>
         and then all the health expectancies with variances or standard  
         deviation (needs data from the Hessian matrices) which slows the          * imach.c: *** empty log message ***
         computation.  
         In the future we should be able to stop the program is only health  2016-08-23  Brouard Nicolas  <brouard@ined.fr>
         expectancies and graph are needed without standard deviations.  
           * imach.c: *** empty log message ***
 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * imach.c: Summary: not working
         * imach.iss (Module):  
   2016-08-22  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): bugs in evsi + population file added in htm output file  
           * imach.c: Summary: not working
 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>  
           * imach.c: Summary: Not working
         * imach.c (Module):  
   2016-07-23  Brouard Nicolas  <brouard@ined.fr>
 2006-03-20  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: Completing for func too
         * imach.c (Module): <title> changed, corresponds to .htm file  
         name. <head> headers where missing.  2016-07-22  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile (Module): 0.98g          * imach.c: Summary: Fixing some arrays, still debugging
   
         * imach.c (Module): Weights can have a decimal point as for  2016-07-21  Brouard Nicolas  <brouard@ined.fr>
         English (a comma might work with a correct LC_NUMERIC environment,  
         otherwise the weight is truncated).          * imach.c:
         Modification of warning when the covariates values are not 0 or          Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
         1.  
         Version 0.98g  2016-07-12  Brouard Nicolas  <brouard@ined.fr>
   
 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          * imach.c: Summary: temp
   
         * imach.c (Module): Comments concerning covariates added          * imach.c: Summary: saving but not running
   
         * noreg-setup.iss (Module): Version 0.98f  2016-07-01  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup          * imach.c: Summary: Fixes
   
         * imach.c (Module): refinements in the computation of lli if  2016-02-19  Brouard Nicolas  <brouard@ined.fr>
         status=-2 in order to have more reliable computation if stepm is  
         not 1 month. Version 0.98f          * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
   
 2006-03-15  Brouard Nicolas  <brouard@localhost>          * setup.iss, Makefile, version.h: *** empty log message ***
   
         * imach.c (Module): Bug if status = -2, the loglikelihood was          * imach.c: Summary: temporary
         computed as likelihood omitting the logarithm. Version O.98e  
   2016-02-17  Brouard Nicolas  <brouard@ined.fr>
 2006-03-14  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: Probably last 0.98 stable version 0.98r6
         * imach.c (Module): varevsij Comments added explaining the second  
         table of variances if popbased=1 .  2016-02-16  Brouard Nicolas  <brouard@ined.fr>
         (Module): Covariances of eij, ekl added, graphs fixed, new html link.  
         (Module): Function pstamp added          * imach.c: Summary: minor bug
         (Module): Version 0.98d  
           * imach.c: Summary: 0.99r2
 2006-03-06  Brouard Nicolas  <brouard@localhost>  
   2016-02-15  Brouard Nicolas  <brouard@ined.fr>
         * imach.c (Module): Variance-covariance wrong links and  
         varian-covariance of ej. is needed (Saito).          * imach.c: *** empty log message ***
   
 2006-02-27  Brouard Nicolas  <brouard@localhost>  2016-02-12  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): One freematrix added in mlikeli!          * imach.c: Summary: 0.99 Back projections
   
 2006-02-26  Brouard Nicolas  <brouard@localhost>  2015-12-23  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Some improvements in processing parameter          * imach.c: Summary: Experimental backcast
         filename with strsep.  
   2015-12-18  Brouard Nicolas  <brouard@ined.fr>
 2006-02-24  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: 0.98r4 Warning and status=-2
         * imach.c (Module): Memory leaks checks with valgrind and:  
         datafile was not closed, some imatrix were not freed and on matrix          Version 0.98r4 is now:
         allocation too.           - displaying an error when status is -1, date of interview unknown and date of death known;
            - permitting a status -2 when the vital status is unknown at a known date of right truncation.
 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>          Older changes concerning s=-2, dating from 2005 have been supersed.
   
         * strsep.c (Module): Inclusion because not in mingw32!!!          * Makefile: *** empty log message ***
   
         * setup.iss.in (Module): IMACHSETUPVERSION added  2015-12-16  Brouard Nicolas  <brouard@ined.fr>
   
         * noreg-setup.iss (Module): added to cvs tree          * Makefile: *** empty log message ***
   
         * Makefile (Module): IMACHSETUPVERSION added          * imach.c: Summary: 0.98r4 working
   
 2006-01-30  BROUARD Nicolas  <brouard@localhost>          * Makefile: Summary: linuxrpm added
   
         * Makefile (Module, Module): Latest Makefile          * Makefile: *** empty log message ***
   
         * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe          * imach.c: Summary: temporary not working
   
 2006-01-27  BROUARD Nicolas  <brouard@localhost>  2015-12-11  Brouard Nicolas  <brouard@ined.fr>
   
         * noreg-setup.iss (Module): ADDED          * imach.c: Summary: 0.98r4
   
 2006-01-24  BROUARD Nicolas  <brouard@localhost>  2015-12-08  Brouard Nicolas  <brouard@ined.fr>
   
         * imach.c (Module): Comments (lines starting with a #) are allowed in data.          * Makefile: *** empty log message ***
   
 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>  2015-11-21  Brouard Nicolas  <brouard@ined.fr>
   
         * Makefile (Module): Added Imach98.pmsp and howto crete a dmg          * Makefile:
           Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
         * createdmg.sh (Module): Creates a dmg disk for MaC OS/X  
           * imach.c: Summary: minor typo
 2005-09-30    <lievre@PC_00595>  
           * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
         * imach.c (Module): sump fixed, loop imx fixed, and simplifications.  
         (Module): If the status is missing at the last wave but we know          Author: Nicolas Brouard
         that the person is alive, then we can code his/her status as -2  
         (instead of missing=-1 in earlier versions) and his/her  2015-11-18  Brouard Nicolas  <brouard@ined.fr>
         contributions to the likelihood is 1 - Prob of dying from last  
         health status (= 1-p13= p11+p12 in the easiest case of somebody in          * imach.c: Summary: Start working on projected prevalences
         the healthy state at last known wave). Version is 0.98  
   2015-11-17  Brouard Nicolas  <brouard@ined.fr>
 2004-05-20  Brouard Nicolas  <brouard@localhost>  
           * imach.c: Summary: Adding ftolpl parameter
         * imach.c (Repository):          Author: N Brouard
         Agnes added a direct estimation of mortality (without the need of  
         computing period prevalence and differential mortality). Thus here          We had difficulties to get smoothed confidence intervals. It was due
         is version 0.97a which has been distributed to some people at          to the period prevalence which wasn't computed accurately. The inner
         REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of          parameter ftolpl is now an outer parameter of the .imach parameter
         mortality using covariates is not done today. Estimating direct          file after estepm. If ftolpl is small 1.e-4 and estepm too,
         mortality is a very different process because it doesn't need          computation are long.
         interpolation because it is easy to get the lx from the force of  
         the mortality mux in the simplest case as for a Gompertz (log mux          * version.h: *** empty log message ***
         = a + b*x . But we have been able to incorporate the new code  
         within former imach program (0.96d) without deteriorating too much          * imach.c: Summary: temporary
         the understanding of the program.  
   2015-10-27  Brouard Nicolas  <brouard@ined.fr>
 2003-06-25    <brouard@BROUARD>  
           * Makefile: *** empty log message ***
         * imach.c (Module): On windows (cygwin) function asctime_r doesn't  
         exist so I changed back to asctime which exists.          * setup.iss.in: Summary: some new subdirs
         (Module): Version 0.96b  
           * imach.c: *** empty log message ***
 2003-06-24    <brouard@BROUARD>  
           * setup.iss.in:
         * imach.c (Module): Some bugs corrected for windows. Also, when          Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
         mle=-1 a template is output in file "or"mypar.txt with the design  
         of the covariance matrix to be input.  2015-10-24  Brouard Nicolas  <brouard@ined.fr>
   
 2003-06-25  Brouard Nicolas  <brouard@homebrou>          * imach.c: *** empty log message ***
   
         * imach.c (Repository): Duplicated warning errors corrected.  2015-10-23  Brouard Nicolas  <brouard@ined.fr>
         (Repository): Elapsed time after each iteration is now output. It  
         helps to forecast when convergence will be reached. Elapsed time          * imach.c:
         is stamped in powell.  We created a new html file for the graphs          Summary: 0.98r3 some clarification for graphs on likelihood contributions
         concerning matrix of covariance. It has extension -cov.htm.  
   2015-10-01  Brouard Nicolas  <brouard@ined.fr>
 2003-06-23  Brouard Nicolas  <brouard@homebrou>  
           * imach.c: Summary: Some new graphs of contribution to likelihood
         * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.  
   2015-09-30  Brouard Nicolas  <brouard@ined.fr>
 2003-06-18  Brouard Nicolas  <brouard@homebrou>  
           * Makefile:
         * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96          Summary: Version read from version.h, itself read with cmake
   
 2003-06-17  Brouard Nicolas  <brouard@homebrou>          * imach.c: Summary: looking at better estimation of the hessian
   
           Also a better criteria for convergence to the period prevalence And
         * imach.c (Repository): Check when date of death was earlier that          therefore adding the number of years needed to converge. (The
         current date of interview. It may happen when the death was just          prevalence in any alive state shold sum to one
         prior to the death. In this case, dh was negative and likelihood  
         was wrong (infinity). We still send an "Error" but patch by          * Makefile: *** empty log message ***
         assuming that the date of death was just one stepm after the  
         interview.  2015-09-22  Brouard Nicolas  <brouard@ined.fr>
         (Repository): Because some people have very long ID (first column)  
         we changed int to long in num[] and we added a new lvector for          * imach.c:
         memory allocation. But we also truncated to 8 characters (left          Summary: Adding some overall graph on contribution to likelihood. Might change
         truncation)  
   2015-09-15  Brouard Nicolas  <brouard@ined.fr>
         (Repository): No more line truncation errors.  
           * Makefile: *** empty log message ***
 2003-06-14  Brouard Nicolas  <brouard@homebrou>  
           * imach.c: Summary: 0.98r0
         * imach.c (Repository): Add of a routine likelione (likelihood  
         only once) which prints on a text file          - Some new graphs like survival functions
         (ilk) the contributions to the likelihood for each          - Some bugs fixed like model=1+age+V2.
         individual/wave.  
           * ChangeLog, Makefile: Summary: 0.98r0
 2003-06-13  Brouard Nicolas  <brouard@homebrou>  
         * imach.c (Repository): Replace "freqsummary" at a correct          * CMakeLists.txt: Summary: Some tests for setup.iss
         place. It differs from routine "prevalence" which may be called  
         many times. Probs is memory consuming and must be used with  2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         parcimony.  
           *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
 2003-06-17    <brouard@BROUARD>  
   2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
         * timeval.h (Module): Added included file to make use of  
         gettimeofday working on win32 with cygwin.          *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
   
 2003-05-16  Brouard Nicolas  <brouard@brouard>  2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
         * imach.c (Module): Insert of a warning if the delay between two  
         waves is negative.          *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
   
         * imach.c (Module):  2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
   
 2003-05-03    <brouard@BROUARD>          * imach.c (Module): Merging 1.61 to 1.162
   
         * imach.c: Some cleaning  2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
   
 2003-03-28    <brouard@BROUARD>          * prevlim.h (Module): 
         * imach.c (Module): In version up to 0.92 likelihood was computed  
         as if date of death was unknown. Death was treated as any other  2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
         health state: the date of the interview describes the actual state  
         and not the date of a change in health state. The former idea was          * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
         to consider that at each interview the state was recorded          (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
         (healthy, disable or death) and IMaCh was corrected; but when we  
         introduced the exact date of death then we should have modified  2010-04-29  brouard  <brouard@ined.fr>
         the contribution of an exact death to the likelihood. This new  
         contribution is smaller and very dependent of the step unit          * imach.c (Module): Checking covariates for more complex models
         stepm. It is no more the probability to die between last interview          than V1+V2. A lot of change to be done. Unstable.
         and month of death but the probability to survive from last  
         interview up to one month before death multiplied by the  2010-04-26  brouard  <brouard@ined.fr>
         probability to die within a month. Thanks to Chris  
         Jackson for correcting this bug.  Former versions increased          * imach.c (Module): merging some libgsl code. Fixing computation
         mortality artificially. The bad side is that we add another loop          of likelione (using inter/intrapolation if mle = 0) in order to
         which slows down the processing. The difference can be up to 10%          get same likelihood as if mle=1.
         lower mortality.          Some cleaning of code and comments added.
   
 2002-05-30    <brouard@BROUARD>  2009-10-29  brouard  <brouard@ined.fr>
         *  
         * imach.c (Module): Add correlation matrix of one-step          * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
         probabilities and covariance matrix  
   2006-06-30  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Clarifications on computing e.j
   
   2006-04-28  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Yes the sum of survivors was wrong since
           imach-114 because nhstepm was no more computed in the age
           loop. Now we define nhstepma in the age loop.
           (Module): In order to speed up (in case of numerous covariates) we
           compute health expectancies (without variances) in a first step
           and then all the health expectancies with variances or standard
           deviation (needs data from the Hessian matrices) which slows the
           computation.
           In the future we should be able to stop the program is only health
           expectancies and graph are needed without standard deviations.
   
   2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.iss (Module): 
   
           * imach.c (Module): bugs in evsi + population file added in htm output file
   
   2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): 
   
   2006-03-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): <title> changed, corresponds to .htm file
           name. <head> headers where missing.
   
           * Makefile (Module): 0.98g
   
           * imach.c (Module): Weights can have a decimal point as for
           English (a comma might work with a correct LC_NUMERIC environment,
           otherwise the weight is truncated).
           Modification of warning when the covariates values are not 0 or
           1. 
           Version 0.98g
   
   2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * imach.c (Module): Comments concerning covariates added
   
           * noreg-setup.iss (Module): Version 0.98f
   
           * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
   
           * imach.c (Module): refinements in the computation of lli if
           status=-2 in order to have more reliable computation if stepm is
           not 1 month. Version 0.98f
   
   2006-03-15  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Bug if status = -2, the loglikelihood was
           computed as likelihood omitting the logarithm. Version O.98e
   
   2006-03-14  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): varevsij Comments added explaining the second
           table of variances if popbased=1 .
           (Module): Covariances of eij, ekl added, graphs fixed, new html link.
           (Module): Function pstamp added
           (Module): Version 0.98d 
   
   2006-03-06  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Variance-covariance wrong links and
           varian-covariance of ej. is needed (Saito).
   
   2006-02-27  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): One freematrix added in mlikeli!
   
   2006-02-26  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Some improvements in processing parameter
           filename with strsep.
   
   2006-02-24  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Module): Memory leaks checks with valgrind and:
           datafile was not closed, some imatrix were not freed and on matrix
           allocation too.
   
   2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   
           * strsep.c (Module): Inclusion because not in mingw32!!!
   
           * setup.iss.in (Module): IMACHSETUPVERSION added
   
           * noreg-setup.iss (Module): added to cvs tree
   
           * Makefile (Module): IMACHSETUPVERSION added
   
   2006-01-30  BROUARD Nicolas  <brouard@localhost>
   
           * Makefile (Module, Module): Latest Makefile
   
           * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   
   2006-01-27  BROUARD Nicolas  <brouard@localhost>
   
           * noreg-setup.iss (Module): ADDED
   
   2006-01-24  BROUARD Nicolas  <brouard@localhost>
   
           * imach.c (Module): Comments (lines starting with a #) are allowed in data.
   
   2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   
           * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   
           * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   
   2005-09-30    <lievre@PC_00595>
   
           * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
           (Module): If the status is missing at the last wave but we know
           that the person is alive, then we can code his/her status as -2
           (instead of missing=-1 in earlier versions) and his/her
           contributions to the likelihood is 1 - Prob of dying from last
           health status (= 1-p13= p11+p12 in the easiest case of somebody in
           the healthy state at last known wave). Version is 0.98 
   
   2004-05-20  Brouard Nicolas  <brouard@localhost>
   
           * imach.c (Repository): 
           Agnes added a direct estimation of mortality (without the need of
           computing period prevalence and differential mortality). Thus here
           is version 0.97a which has been distributed to some people at
           REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
           mortality using covariates is not done today. Estimating direct
           mortality is a very different process because it doesn't need
           interpolation because it is easy to get the lx from the force of
           the mortality mux in the simplest case as for a Gompertz (log mux
           = a + b*x . But we have been able to incorporate the new code
           within former imach program (0.96d) without deteriorating too much
           the understanding of the program. 
   
   2003-06-25    <brouard@BROUARD>
   
           * imach.c (Module): On windows (cygwin) function asctime_r doesn't
           exist so I changed back to asctime which exists.
           (Module): Version 0.96b
   
   2003-06-24    <brouard@BROUARD>
   
           * imach.c (Module): Some bugs corrected for windows. Also, when
           mle=-1 a template is output in file "or"mypar.txt with the design
           of the covariance matrix to be input.
   
   2003-06-25  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Duplicated warning errors corrected.
           (Repository): Elapsed time after each iteration is now output. It
           helps to forecast when convergence will be reached. Elapsed time
           is stamped in powell.  We created a new html file for the graphs
           concerning matrix of covariance. It has extension -cov.htm.
   
   2003-06-23  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
   
   2003-06-18  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
   
   2003-06-17  Brouard Nicolas  <brouard@homebrou>
   
   
           * imach.c (Repository): Check when date of death was earlier that
           current date of interview. It may happen when the death was just
           prior to the death. In this case, dh was negative and likelihood
           was wrong (infinity). We still send an "Error" but patch by
           assuming that the date of death was just one stepm after the
           interview.
           (Repository): Because some people have very long ID (first column)
           we changed int to long in num[] and we added a new lvector for
           memory allocation. But we also truncated to 8 characters (left
           truncation)
   
           (Repository): No more line truncation errors.
   
   2003-06-14  Brouard Nicolas  <brouard@homebrou>
   
           * imach.c (Repository): Add of a routine likelione (likelihood
           only once) which prints on a text file
           (ilk) the contributions to the likelihood for each
           individual/wave.
   
   2003-06-13  Brouard Nicolas  <brouard@homebrou>
           * imach.c (Repository): Replace "freqsummary" at a correct
           place. It differs from routine "prevalence" which may be called
           many times. Probs is memory consuming and must be used with
           parcimony.
   
   2003-06-17    <brouard@BROUARD>
   
           * timeval.h (Module): Added included file to make use of
           gettimeofday working on win32 with cygwin.
   
   2003-05-16  Brouard Nicolas  <brouard@brouard>
           * imach.c (Module): Insert of a warning if the delay between two
           waves is negative.
   
           * imach.c (Module): 
   
   2003-05-03    <brouard@BROUARD>
   
           * imach.c: Some cleaning
   
   2003-03-28    <brouard@BROUARD>
           * imach.c (Module): In version up to 0.92 likelihood was computed
           as if date of death was unknown. Death was treated as any other
           health state: the date of the interview describes the actual state
           and not the date of a change in health state. The former idea was
           to consider that at each interview the state was recorded
           (healthy, disable or death) and IMaCh was corrected; but when we
           introduced the exact date of death then we should have modified
           the contribution of an exact death to the likelihood. This new
           contribution is smaller and very dependent of the step unit
           stepm. It is no more the probability to die between last interview
           and month of death but the probability to survive from last
           interview up to one month before death multiplied by the
           probability to die within a month. Thanks to Chris
           Jackson for correcting this bug.  Former versions increased
           mortality artificially. The bad side is that we add another loop
           which slows down the processing. The difference can be up to 10%
           lower mortality.
   
   2002-05-30    <brouard@BROUARD>
   
           * imach.c (Module): Add correlation matrix of one-step
           probabilities and covariance matrix
   
Removed from v.1.48  
changed lines
  Added in v.1.73

FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>