Annotation of imach/src/ChangeLog, revision 1.72
1.72 ! brouard 1: 2024-07-02 Nicolas Brouard <brouard@ined.fr>
! 2:
! 3: * imach.c (Module): Trying compiling on Linux with clang (instead
! 4: of gcc which is too slow) and lot of warnings suppressed
! 5:
! 6: 2024-06-28 Nicolas Brouard <brouard@ined.fr>
1.71 brouard 7:
8: * imach.c (Module): s6 errors with age*age (harmless).
9:
1.70 brouard 10: 2024-05-12 Nicolas Brouard <brouard@ined.fr>
11:
12: * imach.c Version 0.99s5 In fact, the covariance of total life
13: expectancy e.. with a partial life expectancy e.j is high,
14: therefore the complete matrix of variance covariance has to be
15: included in the formula of the standard error of the proportion of
16: total life expectancy spent in a specific state:
17: var(X/Y)=mu_x^2/mu_y^2*(sigma_x^2/mu_x^2 -2
18: sigma_xy/mu_x/mu_y+sigma^2/mu_y^2). Also an error with mle=-3
19: made the program core dump. It is fixed in this version.
20:
1.69 brouard 21: 2024-04-30 Nicolas Brouard <brouard@ined.fr>
22:
23: * (Module): In version 0.99s4, we incorporated the calculation of
24: the std error of the proportion of total life expectancy spent in
25: a specific state Var(e.j/e..) using the formula of Var(X/Y)
26: depending only of the variances of X and Y and expectancies.
27:
1.68 brouard 28: 2024-04-24 Nicolas Brouard <brouard@ined.fr>
29:
30: * (Module): This version comes late after having tested
31: successfully the praxis C version of Buckhardt. But Buckardt's
32: version was difficult to read and Gegenfurtner's version had a few
33: typos which made its results less reliable than Buckhardt's
34: results. The most important work consisted in retyping the Brent
35: original PRAXIS program written in Algol W (published with errors,
36: ommitting the transposition of matrix V before its QR reduction
37: from Golub. I used the recent "awe" compiler from Gkynn Webster.
38: The awe library had errors, for example in arc tangent function
39: which have been fixed.
40:
41: The main objective was to get identical results with the three
42: versions: (1) Algol W, (2) Buckhardt'C version as well (3)
43: Gegenfürtner C versions on the various test functions published by
44: Brent in 1973 in Algol W.
45:
46: Also, in order to compare them, the random function had to produce
47: the same sequence for the 3 softwares. The random function used in
48: imach corresponds to original Brent's random function written in
49: Algol W. Other point, in Algol W, the arrays of dimension n are
50: 'normal' mathematical arrays starting from 1 to n. But this is a
51: real issue in C where, by default, arrays are starting from 0 to
52: n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
53: seen that authors while trying to mimick original Brent Algol W
54: code are hesitating by changing either a loop originally from 1 to
55: n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
56: shifting the index from original X(I) in Algol W to x[i-1] in C.
57: But as IMaCh is using, since the beginning, the Numerical Recipes
58: functions vector or matrix, I changed Geggenfürtner code to mimick
59: the original Algol W arrays. Thus the X(I) is translated in C as
60: x[i] which minimizes the errors. The Golub QR algorithm was
61: published in Algol with overflow errors which were reproduced in
62: Brent's Algol W code. Buckhardt code fixed these errors which are
63: much more problematic in C than in Algol W. Thus Buckhardt code
64: seems very safe, but i haven't chosen it for IMaCh because the C
65: style is horrible and almost unreadable compared to Gegenfürtner
66: CO code which is very close to Brent's original. Also what makes
67: Buckhardt code more difficult to read is, instead of passing the
68: minimum of parameters in the functions calls, as it is in Algol
69: Brent's code or Gegenfürtner's code, the list of parameters is
70: high. For example, the flin function LONG REAL PROCEDURE FLIN
71: (LONG REAL VALUE L) has only one parameter in Algol W, the
72: Gegenfürtner flin function had two parameters: static double
73: flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
74: function has 14 parameters which makes the code unreadable and
75: useless. Gegenfürtner used a lot of static variables or functions
76: which I tried to minimize. Also in Gegefürtner, array dimensions
77: were fixed to N. In my adaptation the flin is static double
78: flin(double l, int j) and the parameter used are global variables.
79:
80: 2023-06-14 Nicolas Brouard <brouard@ined.fr>
81:
82: * imach.c (Module): Testing if conjugate gradient could be quicker
83: when lot of variables POWELLORIGINCONJUGATE
84:
1.67 brouard 85: 2023-05-23 Nicolas Brouard <brouard@ined.fr>
86:
87: * imach.c (Module): Fixed PROB_r
88:
89: 2023-05-22 Nicolas Brouard <brouard@ined.fr>
90:
91: * imach.c (Module): In the ILK....txt file, the number of columns
92: before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
93:
1.66 brouard 94: 2023-05-08 Nicolas Brouard <brouard@ined.fr>
95:
96: * (Module): Error V0 when result:. and model 1+age+V1: fixed
97:
1.63 brouard 98: 2023-04-29 Nicolas Brouard <brouard@ined.fr>
99:
100: * imach.c (Module): Inverting the model equation and fixingg bugs
101: in the drawings
102: "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
103:
104: 2023-04-24 Nicolas Brouard <brouard@ined.fr>
105:
106: * imach.c (Module): some bugs in printinggnuplot
107:
1.62 brouard 108: 2022-09-19 Nicolas Brouard <brouard@ined.fr>
109:
110: * imach.c (Module): Version 0.99r42 needed a newer version of
111: Gnuplot. But newer version 0.99r43 should run with the Gnuplot
112: version 5.0 or 5.1 distributed with IMaCh.
113:
1.61 brouard 114: 2022-09-18 Nicolas Brouard <brouard@ined.fr>
115:
116: * imach.c (Module): Fixing when a state in the data is 0 or higher
117: than lstate+ndeath. Fixing the plot of contribution to Likelihood.
118:
1.63 brouard 119: 2022-09-16 Nicolas Brouard <brouard@ined.fr>
120:
121: * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you Feinuo
122:
123: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
124:
125: * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
126:
1.61 brouard 127: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
128:
129: * imach.c (Module): Version 0.99r39 with colored dummy covariates
130: (fixed or time varying), using new last columns of
131: ILK_parameter.txt file.
132:
1.60 brouard 133: 2022-09-11 Nicolas Brouard <brouard@ined.fr>
134:
135: * imach.c (Module): Adding timevarying products of any kinds,
136: should work before shifting cotvar from ncovcol+nqv columns in
137: order to have a correspondance between the column of cotvar and
138: the id of column.
1.61 brouard 139: (Module): Some cleaning and adding covariates in ILK.txt
1.60 brouard 140:
141: 2022-09-09 Nicolas Brouard <brouard@ined.fr>
142:
143: * imach.c (Module): Many improvements for fixing products of fixed
144: timevarying as well as fixed * fixed, and test with quantitative
145: covariate.
146:
1.59 brouard 147: 2022-09-04 Nicolas Brouard <brouard@ined.fr>
148:
149: * imach.c (Module): Now the easy runs i.e. without result or
150: model=1+age only did not work. The defautl combination should be 1
151: and not 0 because everything hasn't been tranformed yet.
152:
153: 2022-09-02 Nicolas Brouard <brouard@ined.fr>
154:
155: * imach.c: Version 0.99r35 because it outputs same results with
156: 1+age+V1+V1*age for females and 1+age for females only
157: (education=1 noweight)
158:
1.58 brouard 159: 2022-08-31 Nicolas Brouard <brouard@ined.fr>
160:
161: * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
162:
1.56 brouard 163: 2022-08-21 Nicolas Brouard <brouard@ined.fr>
164:
165: * imach.c (Module): Version 0.99r33 A lot of changes in
166: reassigning covariates: my first idea was that people will always
167: use the first covariate V1 into the model but in fact they are
168: producing data with many covariates and can use an equation model
169: with some of the covariate; it means that in a model V2+V3 instead
170: of codtabm(k,Tvaraff[j]) which calculates for combination k, for
171: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
172: the equation model is restricted to two variables only (V2, V3)
173: and the combination for V2 should be codtabm(k,1) instead of
174: (codtabm(k,2), and the code should be
175: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
176: made. All of these should be simplified once a day like we did in
177: hpxij() for example by using precov[nres] which is computed in
178: decoderesult for each nres of each resultline. Loop should be done
179: on the equation model globally by distinguishing only product with
180: age (which are changing with age) and no more on type of
181: covariates, single dummies, single covariates.
182:
183: 2022-08-06 Nicolas Brouard <brouard@ined.fr>
184:
185: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
186:
187: 2022-08-03 Nicolas Brouard <brouard@ined.fr>
188:
189: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
190:
1.55 brouard 191: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
192:
193: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
194: coredumped, revealed by Feiuno, thank you.
1.57 brouard 195:
196: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
197:
198: * r29 W and not sqrt(Wald)
199:
200: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
201:
202: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
203:
1.55 brouard 204: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
205:
206: * imach.c (Module): Adding the Wald tests from the log to the main
1.65 brouard 207: htm for better display of the maximum likelihood estimators.
1.57 brouard 208:
1.65 brouard 209: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
210:
211: * imach.c: With products of covariates (age or dummies or
212: quantitatives), estimates of parameters were good but when
213: estimating variances the positions of newly created covariates
214: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
215:
216: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
217:
218: * imach.c (Module): Some attempts to find a bug of wrong estimates
219: of confidencce intervals with product in the equation modelC
220:
221: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
222:
223: * imach.c (Module): Some minor improvements
224:
225: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
226:
227: * imach.c (Module): Adding link to text data files
228:
229: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
230:
231: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
232:
233: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
234:
235: * imach.c (Module): Fixed covariates (dummy or quantitative)
236: with missing values have never been allowed but are ERRORS and
237: program quits. Standard deviations of fixed covariates were
238: wrongly computed. Mean and standard deviations of time varying
239: covariates are still not computed.
240:
241: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
242:
243: * 99r25 Improvements in fixing discrepancies between covariates
244: missing in result line but in model.
245:
246: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
247: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
248:
249: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
250:
251: * ./ (Module): Fixed bug on result:
252:
253: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
254:
255: * imach.c (Module): Fix bug on quitting after result lines!
256: (Module): Version 0.99r21
257:
258: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
259:
260: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
261:
262:
263: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
264:
265: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
266:
267: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
268:
269: * (Module): imach.c Update mle=-3 (for computing Life expectancy
270: and life table from the data without any state)
271:
272: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
273:
274: * version.h: Summary: version 0.99.r19
275:
276: * imach.c: Summary: Projection syntax simplified
277: We can now start projections, forward or backward, from the mean date
278: of inteviews up to or down to a number of years of projection:
279: prevforecast=1 yearsfproj=15.3 mobil_average=0
280: or
281: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
282: or
283: prevbackcast=1 yearsbproj=12.3 mobil_average=1
284: or
285: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
286:
287: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
288:
289: * imach.c: Summary: doxygen tex bug
290:
291: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
292:
293: * imach.c: Summary: There was some wrong lines added
294:
295: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
296:
297: * Makefile, imach.c: *** empty log message ***
298:
299: * ChangeLog: Summary: C=
300:
301: * imach.c: Summary: Some updates
302:
303: * imach.c: Summary: Before ncovmax
304:
305: * version.h: *** empty log message ***
306:
307: * imach.c: Summary: 0.99r18 unlimited number of individuals
308: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
309:
310: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
311:
312: * imach.c: Summary: Bug for young ages (<-30) will be in r17
313:
314: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
315:
316: * Makefile: Summary: 0.99r16
317:
318: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
319:
320: * imach.c: Summary: Some bugs fixed
321:
322: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
323:
324: * imach.c: Summary: Bug for young ages (<-30) will be in r17
325:
326: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
327:
328: * imach.c: Summary: Some bugs fixed
329:
330: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
331:
332: * imach.c:
333: Summary: Bug fixed by providing frequencies only for non missing covariates
334:
335: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
336:
337: * imach.c: Summary: some minor bugs
338:
339: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
340:
341: * README.txt: *** empty log message ***
342:
343: * imach.c: Summary: Some bugs fixed, valgrind tested
344:
345: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
346:
347: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
348:
349: * imach.c:
350: Summary: Computing mean and stdeviation of fixed quantitative variables
351:
352: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
353:
354: * imach.c: Summary: Some minor bugs fixed
355:
356: * version.h: *** empty log message ***
357:
358: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
359:
360: * imach.c: *** empty log message ***
361:
362: * imach.c: Summary: Adding second argument for quitting
363:
364: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
365:
366: * Makefile, README.txt, imach.c: Summary: 0.99r15
367: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
368:
369: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
370:
371: * imach.c: Summary: temporary working
372:
373: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
374:
375: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
376:
377: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
378:
379: * imach.c: Summary: BOM files can be read now
380:
381: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
382:
383: * imach.c: Summary: Graphs improvements
384:
385: * imach.c: Summary: Saito's color
386:
387: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
388:
389: * imach.c: Summary: Version 0.99r14
390:
391: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
392:
393: * imach.c: Summary: More documentation on projections
394:
395: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
396:
397: * imach.c: Summary: Some bug with rint
398:
399: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
400:
401: * imach.c: *** empty log message ***
402:
403: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
404:
405: * imach.c: Summary: Code into subroutine, cleanings
406:
407: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
408:
409: * imach.c:
410: Summary: backprojection and confidence intervals of backprevalence
411:
412: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
413:
414: * imach.c: Summary: temporary save for backprojection
415:
416: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
417:
418: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
419:
420: * imach.c: Summary: imach 0.99r13 Some bugs fixed
421:
422: * imach.c: Summary: Labels in graphs
423:
424: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
425:
426: * imach.c: Summary: to save
427:
428: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
429:
430: * imach.c: *** empty log message ***
431:
432: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
433:
434: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
435:
436: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
437:
438: * imach.c: Summary: Gnuplot indexations fixed (humm)
439:
440: * imach.c:
441: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
442:
443: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
444:
445: * imach.c: Summary: Version 0.99r12
446: Some cleanings, conformed with updated documentation.
447:
448: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
449:
450: * version.h: *** empty log message ***
451:
452: * version.h: Summary:0.99r11
453:
454: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
455:
456: * imach.c: Summary: Temp
457:
458: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
459:
460: * imach.c: Summary: Temporary
461:
462: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
463:
464: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
465:
466: * imach.c: Summary: Fixing data parameter line
467:
468: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
469:
470: * imach.c: Summary: 0.99 in progress
471:
472: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
473:
474: * imach.c: *** empty log message ***
475:
476: * imach.c: Summary: not working
477:
478: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
479:
480: * imach.c: Summary: continue
481:
482: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
483:
484: * imach.c: Summary: Starting values from frequencies
485:
486: * imach.c: *** empty log message ***
487:
488: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
489:
490: * imach.c: *** empty log message ***
491:
492: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
493:
494: * imach.c: Summary: Fixing a lots
495:
496: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
497:
498: * imach.c: Summary: gnuplot problem in Back projection to fix
499:
500: * imach.c: Summary: Better
501:
502: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
503:
504: * imach.c:
505: Summary: Improvement in Powell output in order to copy and paste
506:
507: * imach.c: Summary: Starting tests of 0.99
508:
509: * imach.c: Summary: to valgrind
510:
511: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
512:
513: * imach.c: *** empty log message ***
514:
515: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
516:
517: * imach.c: *** empty log message ***
518:
519: * imach.c: Summary: not working
520:
521: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
522:
523: * imach.c: Summary: not working
524:
525: * imach.c: Summary: Not working
526:
527: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
528:
529: * imach.c: Summary: Completing for func too
530:
531: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
532:
533: * imach.c: Summary: Fixing some arrays, still debugging
534:
535: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
536:
537: * imach.c:
538: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
539:
540: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
541:
542: * imach.c: Summary: temp
543:
544: * imach.c: Summary: saving but not running
545:
546: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
547:
548: * imach.c: Summary: Fixes
549:
550: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
551:
552: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
553:
554: * setup.iss, Makefile, version.h: *** empty log message ***
555:
556: * imach.c: Summary: temporary
557:
558: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
559:
560: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
561:
562: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
563:
564: * imach.c: Summary: minor bug
565:
566: * imach.c: Summary: 0.99r2
567:
568: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
569:
570: * imach.c: *** empty log message ***
571:
572: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
573:
574: * imach.c: Summary: 0.99 Back projections
575:
576: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
577:
578: * imach.c: Summary: Experimental backcast
579:
580: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
581:
582: * imach.c: Summary: 0.98r4 Warning and status=-2
583:
584: Version 0.98r4 is now:
585: - displaying an error when status is -1, date of interview unknown and date of death known;
586: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
587: Older changes concerning s=-2, dating from 2005 have been supersed.
588:
589: * Makefile: *** empty log message ***
590:
591: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
592:
593: * Makefile: *** empty log message ***
594:
595: * imach.c: Summary: 0.98r4 working
596:
597: * Makefile: Summary: linuxrpm added
598:
599: * Makefile: *** empty log message ***
600:
601: * imach.c: Summary: temporary not working
602:
603: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
604:
605: * imach.c: Summary: 0.98r4
606:
607: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
608:
609: * Makefile: *** empty log message ***
610:
611: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
612:
613: * Makefile:
614: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
615:
616: * imach.c: Summary: minor typo
617:
618: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
619:
620: Author: Nicolas Brouard
621:
622: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
623:
624: * imach.c: Summary: Start working on projected prevalences
625:
626: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
627:
628: * imach.c: Summary: Adding ftolpl parameter
629: Author: N Brouard
630:
631: We had difficulties to get smoothed confidence intervals. It was due
632: to the period prevalence which wasn't computed accurately. The inner
633: parameter ftolpl is now an outer parameter of the .imach parameter
634: file after estepm. If ftolpl is small 1.e-4 and estepm too,
635: computation are long.
636:
637: * version.h: *** empty log message ***
638:
639: * imach.c: Summary: temporary
640:
641: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
642:
643: * Makefile: *** empty log message ***
644:
645: * setup.iss.in: Summary: some new subdirs
646:
647: * imach.c: *** empty log message ***
648:
649: * setup.iss.in:
650: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
651:
652: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
653:
654: * imach.c: *** empty log message ***
655:
656: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
657:
658: * imach.c:
659: Summary: 0.98r3 some clarification for graphs on likelihood contributions
660:
661: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
662:
663: * imach.c: Summary: Some new graphs of contribution to likelihood
664:
665: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
666:
667: * Makefile:
668: Summary: Version read from version.h, itself read with cmake
669:
670: * imach.c: Summary: looking at better estimation of the hessian
671:
672: Also a better criteria for convergence to the period prevalence And
673: therefore adding the number of years needed to converge. (The
674: prevalence in any alive state shold sum to one
675:
676: * Makefile: *** empty log message ***
677:
678: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
679:
680: * imach.c:
681: Summary: Adding some overall graph on contribution to likelihood. Might change
682:
683: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
684:
685: * Makefile: *** empty log message ***
686:
687: * imach.c: Summary: 0.98r0
688:
689: - Some new graphs like survival functions
690: - Some bugs fixed like model=1+age+V2.
691:
692: * ChangeLog, Makefile: Summary: 0.98r0
693:
694: * CMakeLists.txt: Summary: Some tests for setup.iss
695:
696: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
697:
698: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
699:
700: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
701:
702: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
703:
704: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
705:
706: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
707:
708: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
709:
710: * imach.c (Module): Merging 1.61 to 1.162
711:
712: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
713:
714: * prevlim.h (Module):
715:
716: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
717:
718: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
719: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
720:
721: 2010-04-29 brouard <brouard@ined.fr>
722:
723: * imach.c (Module): Checking covariates for more complex models
724: than V1+V2. A lot of change to be done. Unstable.
725:
726: 2010-04-26 brouard <brouard@ined.fr>
727:
728: * imach.c (Module): merging some libgsl code. Fixing computation
729: of likelione (using inter/intrapolation if mle = 0) in order to
730: get same likelihood as if mle=1.
731: Some cleaning of code and comments added.
732:
733: 2009-10-29 brouard <brouard@ined.fr>
734:
735: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
736:
737: 2006-06-30 Brouard Nicolas <brouard@localhost>
738:
739: * imach.c (Module): Clarifications on computing e.j
740:
741: 2006-04-28 Brouard Nicolas <brouard@localhost>
742:
743: * imach.c (Module): Yes the sum of survivors was wrong since
744: imach-114 because nhstepm was no more computed in the age
745: loop. Now we define nhstepma in the age loop.
746: (Module): In order to speed up (in case of numerous covariates) we
747: compute health expectancies (without variances) in a first step
748: and then all the health expectancies with variances or standard
749: deviation (needs data from the Hessian matrices) which slows the
750: computation.
751: In the future we should be able to stop the program is only health
752: expectancies and graph are needed without standard deviations.
753:
754: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
755:
756: * imach.iss (Module):
757:
758: * imach.c (Module): bugs in evsi + population file added in htm output file
759:
760: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
761:
762: * imach.c (Module):
763:
764: 2006-03-20 Brouard Nicolas <brouard@localhost>
765:
766: * imach.c (Module): <title> changed, corresponds to .htm file
767: name. <head> headers where missing.
768:
769: * Makefile (Module): 0.98g
770:
771: * imach.c (Module): Weights can have a decimal point as for
772: English (a comma might work with a correct LC_NUMERIC environment,
773: otherwise the weight is truncated).
774: Modification of warning when the covariates values are not 0 or
775: 1.
776: Version 0.98g
777:
778: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
779:
780: * imach.c (Module): Comments concerning covariates added
781:
782: * noreg-setup.iss (Module): Version 0.98f
783:
784: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
785:
786: * imach.c (Module): refinements in the computation of lli if
787: status=-2 in order to have more reliable computation if stepm is
788: not 1 month. Version 0.98f
789:
790: 2006-03-15 Brouard Nicolas <brouard@localhost>
791:
792: * imach.c (Module): Bug if status = -2, the loglikelihood was
793: computed as likelihood omitting the logarithm. Version O.98e
794:
795: 2006-03-14 Brouard Nicolas <brouard@localhost>
796:
797: * imach.c (Module): varevsij Comments added explaining the second
798: table of variances if popbased=1 .
799: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
800: (Module): Function pstamp added
801: (Module): Version 0.98d
802:
803: 2006-03-06 Brouard Nicolas <brouard@localhost>
804:
805: * imach.c (Module): Variance-covariance wrong links and
806: varian-covariance of ej. is needed (Saito).
807:
808: 2006-02-27 Brouard Nicolas <brouard@localhost>
809:
810: * imach.c (Module): One freematrix added in mlikeli!
811:
812: 2006-02-26 Brouard Nicolas <brouard@localhost>
813:
814: * imach.c (Module): Some improvements in processing parameter
815: filename with strsep.
816:
817: 2006-02-24 Brouard Nicolas <brouard@localhost>
818:
819: * imach.c (Module): Memory leaks checks with valgrind and:
820: datafile was not closed, some imatrix were not freed and on matrix
821: allocation too.
822:
823: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
824:
825: * strsep.c (Module): Inclusion because not in mingw32!!!
826:
827: * setup.iss.in (Module): IMACHSETUPVERSION added
828:
829: * noreg-setup.iss (Module): added to cvs tree
830:
831: * Makefile (Module): IMACHSETUPVERSION added
832:
833: 2006-01-30 BROUARD Nicolas <brouard@localhost>
834:
835: * Makefile (Module, Module): Latest Makefile
836:
837: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
838:
839: 2006-01-27 BROUARD Nicolas <brouard@localhost>
840:
841: * noreg-setup.iss (Module): ADDED
842:
843: 2006-01-24 BROUARD Nicolas <brouard@localhost>
844:
845: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
846:
847: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
848:
849: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
850:
851: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
852:
853: 2005-09-30 <lievre@PC_00595>
854:
855: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
856: (Module): If the status is missing at the last wave but we know
857: that the person is alive, then we can code his/her status as -2
858: (instead of missing=-1 in earlier versions) and his/her
859: contributions to the likelihood is 1 - Prob of dying from last
860: health status (= 1-p13= p11+p12 in the easiest case of somebody in
861: the healthy state at last known wave). Version is 0.98
862:
863: 2004-05-20 Brouard Nicolas <brouard@localhost>
864:
865: * imach.c (Repository):
866: Agnes added a direct estimation of mortality (without the need of
867: computing period prevalence and differential mortality). Thus here
868: is version 0.97a which has been distributed to some people at
869: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
870: mortality using covariates is not done today. Estimating direct
871: mortality is a very different process because it doesn't need
872: interpolation because it is easy to get the lx from the force of
873: the mortality mux in the simplest case as for a Gompertz (log mux
874: = a + b*x . But we have been able to incorporate the new code
875: within former imach program (0.96d) without deteriorating too much
876: the understanding of the program.
877:
878: 2003-06-25 <brouard@BROUARD>
879:
880: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
881: exist so I changed back to asctime which exists.
882: (Module): Version 0.96b
883:
884: 2003-06-24 <brouard@BROUARD>
885:
886: * imach.c (Module): Some bugs corrected for windows. Also, when
887: mle=-1 a template is output in file "or"mypar.txt with the design
888: of the covariance matrix to be input.
889:
890: 2003-06-25 Brouard Nicolas <brouard@homebrou>
891:
892: * imach.c (Repository): Duplicated warning errors corrected.
893: (Repository): Elapsed time after each iteration is now output. It
894: helps to forecast when convergence will be reached. Elapsed time
895: is stamped in powell. We created a new html file for the graphs
896: concerning matrix of covariance. It has extension -cov.htm.
897:
898: 2003-06-23 Brouard Nicolas <brouard@homebrou>
899:
900: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
901:
902: 2003-06-18 Brouard Nicolas <brouard@homebrou>
903:
904: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
905:
906: 2003-06-17 Brouard Nicolas <brouard@homebrou>
907:
908:
909: * imach.c (Repository): Check when date of death was earlier that
910: current date of interview. It may happen when the death was just
911: prior to the death. In this case, dh was negative and likelihood
912: was wrong (infinity). We still send an "Error" but patch by
913: assuming that the date of death was just one stepm after the
914: interview.
915: (Repository): Because some people have very long ID (first column)
916: we changed int to long in num[] and we added a new lvector for
917: memory allocation. But we also truncated to 8 characters (left
918: truncation)
919:
920: (Repository): No more line truncation errors.
921:
922: 2003-06-14 Brouard Nicolas <brouard@homebrou>
923:
924: * imach.c (Repository): Add of a routine likelione (likelihood
925: only once) which prints on a text file
926: (ilk) the contributions to the likelihood for each
927: individual/wave.
928:
929: 2003-06-13 Brouard Nicolas <brouard@homebrou>
930: * imach.c (Repository): Replace "freqsummary" at a correct
931: place. It differs from routine "prevalence" which may be called
932: many times. Probs is memory consuming and must be used with
933: parcimony.
934:
935: 2003-06-17 <brouard@BROUARD>
936:
937: * timeval.h (Module): Added included file to make use of
938: gettimeofday working on win32 with cygwin.
939:
940: 2003-05-16 Brouard Nicolas <brouard@brouard>
941: * imach.c (Module): Insert of a warning if the delay between two
942: waves is negative.
943:
944: * imach.c (Module):
945:
946: 2003-05-03 <brouard@BROUARD>
947:
948: * imach.c: Some cleaning
949:
950: 2003-03-28 <brouard@BROUARD>
951: * imach.c (Module): In version up to 0.92 likelihood was computed
952: as if date of death was unknown. Death was treated as any other
953: health state: the date of the interview describes the actual state
954: and not the date of a change in health state. The former idea was
955: to consider that at each interview the state was recorded
956: (healthy, disable or death) and IMaCh was corrected; but when we
957: introduced the exact date of death then we should have modified
958: the contribution of an exact death to the likelihood. This new
959: contribution is smaller and very dependent of the step unit
960: stepm. It is no more the probability to die between last interview
961: and month of death but the probability to survive from last
962: interview up to one month before death multiplied by the
963: probability to die within a month. Thanks to Chris
964: Jackson for correcting this bug. Former versions increased
965: mortality artificially. The bad side is that we add another loop
966: which slows down the processing. The difference can be up to 10%
967: lower mortality.
968:
969: 2002-05-30 <brouard@BROUARD>
970:
971: * imach.c (Module): Add correlation matrix of one-step
972: probabilities and covariance matrix
1.54 brouard 973:
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