Annotation of imach/src/ChangeLog, revision 1.74
1.74 ! brouard 1: 2024-07-08 Nicolas Brouard <brouard@ined.fr>
! 2:
! 3: * imach.c (Module): Some bug fixes: in drawings when age*age is
! 4: included in the model as well as with quantitative variables.
! 5:
1.72 brouard 6: 2024-07-02 Nicolas Brouard <brouard@ined.fr>
7:
8: * imach.c (Module): Trying compiling on Linux with clang (instead
9: of gcc which is too slow) and lot of warnings suppressed
10:
1.73 brouard 11: 2024-06-28 Nicolas Brouard <brouard@ined.fr>
12:
1.74 ! brouard 13: * imach.c (Module): fixing some bugs in gnuplot and quantitative
! 14: variables, but not completely solved
1.73 brouard 15:
1.72 brouard 16: 2024-06-28 Nicolas Brouard <brouard@ined.fr>
1.71 brouard 17:
18: * imach.c (Module): s6 errors with age*age (harmless).
19:
1.70 brouard 20: 2024-05-12 Nicolas Brouard <brouard@ined.fr>
21:
22: * imach.c Version 0.99s5 In fact, the covariance of total life
23: expectancy e.. with a partial life expectancy e.j is high,
24: therefore the complete matrix of variance covariance has to be
25: included in the formula of the standard error of the proportion of
26: total life expectancy spent in a specific state:
27: var(X/Y)=mu_x^2/mu_y^2*(sigma_x^2/mu_x^2 -2
28: sigma_xy/mu_x/mu_y+sigma^2/mu_y^2). Also an error with mle=-3
29: made the program core dump. It is fixed in this version.
30:
1.69 brouard 31: 2024-04-30 Nicolas Brouard <brouard@ined.fr>
32:
33: * (Module): In version 0.99s4, we incorporated the calculation of
34: the std error of the proportion of total life expectancy spent in
35: a specific state Var(e.j/e..) using the formula of Var(X/Y)
36: depending only of the variances of X and Y and expectancies.
37:
1.68 brouard 38: 2024-04-24 Nicolas Brouard <brouard@ined.fr>
39:
40: * (Module): This version comes late after having tested
41: successfully the praxis C version of Buckhardt. But Buckardt's
42: version was difficult to read and Gegenfurtner's version had a few
43: typos which made its results less reliable than Buckhardt's
44: results. The most important work consisted in retyping the Brent
45: original PRAXIS program written in Algol W (published with errors,
46: ommitting the transposition of matrix V before its QR reduction
47: from Golub. I used the recent "awe" compiler from Gkynn Webster.
48: The awe library had errors, for example in arc tangent function
49: which have been fixed.
50:
51: The main objective was to get identical results with the three
52: versions: (1) Algol W, (2) Buckhardt'C version as well (3)
53: Gegenfürtner C versions on the various test functions published by
54: Brent in 1973 in Algol W.
55:
56: Also, in order to compare them, the random function had to produce
57: the same sequence for the 3 softwares. The random function used in
58: imach corresponds to original Brent's random function written in
59: Algol W. Other point, in Algol W, the arrays of dimension n are
60: 'normal' mathematical arrays starting from 1 to n. But this is a
61: real issue in C where, by default, arrays are starting from 0 to
62: n-1. In Buckhardt, as well as in Gegenfürtner C code, it can be
63: seen that authors while trying to mimick original Brent Algol W
64: code are hesitating by changing either a loop originally from 1 to
65: n in a loop from 0 to n-1, or keeping Brent's loop from 1 to n and
66: shifting the index from original X(I) in Algol W to x[i-1] in C.
67: But as IMaCh is using, since the beginning, the Numerical Recipes
68: functions vector or matrix, I changed Geggenfürtner code to mimick
69: the original Algol W arrays. Thus the X(I) is translated in C as
70: x[i] which minimizes the errors. The Golub QR algorithm was
71: published in Algol with overflow errors which were reproduced in
72: Brent's Algol W code. Buckhardt code fixed these errors which are
73: much more problematic in C than in Algol W. Thus Buckhardt code
74: seems very safe, but i haven't chosen it for IMaCh because the C
75: style is horrible and almost unreadable compared to Gegenfürtner
76: CO code which is very close to Brent's original. Also what makes
77: Buckhardt code more difficult to read is, instead of passing the
78: minimum of parameters in the functions calls, as it is in Algol
79: Brent's code or Gegenfürtner's code, the list of parameters is
80: high. For example, the flin function LONG REAL PROCEDURE FLIN
81: (LONG REAL VALUE L) has only one parameter in Algol W, the
82: Gegenfürtner flin function had two parameters: static double
83: flin(l, j) double l; { int i; double tflin[N];} but Buckhardt
84: function has 14 parameters which makes the code unreadable and
85: useless. Gegenfürtner used a lot of static variables or functions
86: which I tried to minimize. Also in Gegefürtner, array dimensions
87: were fixed to N. In my adaptation the flin is static double
88: flin(double l, int j) and the parameter used are global variables.
89:
90: 2023-06-14 Nicolas Brouard <brouard@ined.fr>
91:
92: * imach.c (Module): Testing if conjugate gradient could be quicker
93: when lot of variables POWELLORIGINCONJUGATE
94:
1.67 brouard 95: 2023-05-23 Nicolas Brouard <brouard@ined.fr>
96:
97: * imach.c (Module): Fixed PROB_r
98:
99: 2023-05-22 Nicolas Brouard <brouard@ined.fr>
100:
101: * imach.c (Module): In the ILK....txt file, the number of columns
102: before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
103:
1.66 brouard 104: 2023-05-08 Nicolas Brouard <brouard@ined.fr>
105:
106: * (Module): Error V0 when result:. and model 1+age+V1: fixed
107:
1.63 brouard 108: 2023-04-29 Nicolas Brouard <brouard@ined.fr>
109:
110: * imach.c (Module): Inverting the model equation and fixingg bugs
111: in the drawings
112: "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
113:
114: 2023-04-24 Nicolas Brouard <brouard@ined.fr>
115:
116: * imach.c (Module): some bugs in printinggnuplot
117:
1.62 brouard 118: 2022-09-19 Nicolas Brouard <brouard@ined.fr>
119:
120: * imach.c (Module): Version 0.99r42 needed a newer version of
121: Gnuplot. But newer version 0.99r43 should run with the Gnuplot
122: version 5.0 or 5.1 distributed with IMaCh.
123:
1.61 brouard 124: 2022-09-18 Nicolas Brouard <brouard@ined.fr>
125:
126: * imach.c (Module): Fixing when a state in the data is 0 or higher
127: than lstate+ndeath. Fixing the plot of contribution to Likelihood.
128:
1.63 brouard 129: 2022-09-16 Nicolas Brouard <brouard@ined.fr>
130:
131: * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you Feinuo
132:
133: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
134:
135: * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
136:
1.61 brouard 137: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
138:
139: * imach.c (Module): Version 0.99r39 with colored dummy covariates
140: (fixed or time varying), using new last columns of
141: ILK_parameter.txt file.
142:
1.60 brouard 143: 2022-09-11 Nicolas Brouard <brouard@ined.fr>
144:
145: * imach.c (Module): Adding timevarying products of any kinds,
146: should work before shifting cotvar from ncovcol+nqv columns in
147: order to have a correspondance between the column of cotvar and
148: the id of column.
1.61 brouard 149: (Module): Some cleaning and adding covariates in ILK.txt
1.60 brouard 150:
151: 2022-09-09 Nicolas Brouard <brouard@ined.fr>
152:
153: * imach.c (Module): Many improvements for fixing products of fixed
154: timevarying as well as fixed * fixed, and test with quantitative
155: covariate.
156:
1.59 brouard 157: 2022-09-04 Nicolas Brouard <brouard@ined.fr>
158:
159: * imach.c (Module): Now the easy runs i.e. without result or
160: model=1+age only did not work. The defautl combination should be 1
161: and not 0 because everything hasn't been tranformed yet.
162:
163: 2022-09-02 Nicolas Brouard <brouard@ined.fr>
164:
165: * imach.c: Version 0.99r35 because it outputs same results with
166: 1+age+V1+V1*age for females and 1+age for females only
167: (education=1 noweight)
168:
1.58 brouard 169: 2022-08-31 Nicolas Brouard <brouard@ined.fr>
170:
171: * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
172:
1.56 brouard 173: 2022-08-21 Nicolas Brouard <brouard@ined.fr>
174:
175: * imach.c (Module): Version 0.99r33 A lot of changes in
176: reassigning covariates: my first idea was that people will always
177: use the first covariate V1 into the model but in fact they are
178: producing data with many covariates and can use an equation model
179: with some of the covariate; it means that in a model V2+V3 instead
180: of codtabm(k,Tvaraff[j]) which calculates for combination k, for
181: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
182: the equation model is restricted to two variables only (V2, V3)
183: and the combination for V2 should be codtabm(k,1) instead of
184: (codtabm(k,2), and the code should be
185: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
186: made. All of these should be simplified once a day like we did in
187: hpxij() for example by using precov[nres] which is computed in
188: decoderesult for each nres of each resultline. Loop should be done
189: on the equation model globally by distinguishing only product with
190: age (which are changing with age) and no more on type of
191: covariates, single dummies, single covariates.
192:
193: 2022-08-06 Nicolas Brouard <brouard@ined.fr>
194:
195: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
196:
197: 2022-08-03 Nicolas Brouard <brouard@ined.fr>
198:
199: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
200:
1.55 brouard 201: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
202:
203: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
204: coredumped, revealed by Feiuno, thank you.
1.57 brouard 205:
206: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
207:
208: * r29 W and not sqrt(Wald)
209:
210: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
211:
212: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
213:
1.55 brouard 214: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
215:
216: * imach.c (Module): Adding the Wald tests from the log to the main
1.65 brouard 217: htm for better display of the maximum likelihood estimators.
1.57 brouard 218:
1.65 brouard 219: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
220:
221: * imach.c: With products of covariates (age or dummies or
222: quantitatives), estimates of parameters were good but when
223: estimating variances the positions of newly created covariates
224: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
225:
226: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
227:
228: * imach.c (Module): Some attempts to find a bug of wrong estimates
229: of confidencce intervals with product in the equation modelC
230:
231: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
232:
233: * imach.c (Module): Some minor improvements
234:
235: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
236:
237: * imach.c (Module): Adding link to text data files
238:
239: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
240:
241: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
242:
243: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
244:
245: * imach.c (Module): Fixed covariates (dummy or quantitative)
246: with missing values have never been allowed but are ERRORS and
247: program quits. Standard deviations of fixed covariates were
248: wrongly computed. Mean and standard deviations of time varying
249: covariates are still not computed.
250:
251: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
252:
253: * 99r25 Improvements in fixing discrepancies between covariates
254: missing in result line but in model.
255:
256: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
257: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
258:
259: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
260:
261: * ./ (Module): Fixed bug on result:
262:
263: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
264:
265: * imach.c (Module): Fix bug on quitting after result lines!
266: (Module): Version 0.99r21
267:
268: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
269:
270: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
271:
272:
273: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
274:
275: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
276:
277: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
278:
279: * (Module): imach.c Update mle=-3 (for computing Life expectancy
280: and life table from the data without any state)
281:
282: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
283:
284: * version.h: Summary: version 0.99.r19
285:
286: * imach.c: Summary: Projection syntax simplified
287: We can now start projections, forward or backward, from the mean date
288: of inteviews up to or down to a number of years of projection:
289: prevforecast=1 yearsfproj=15.3 mobil_average=0
290: or
291: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
292: or
293: prevbackcast=1 yearsbproj=12.3 mobil_average=1
294: or
295: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
296:
297: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
298:
299: * imach.c: Summary: doxygen tex bug
300:
301: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
302:
303: * imach.c: Summary: There was some wrong lines added
304:
305: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
306:
307: * Makefile, imach.c: *** empty log message ***
308:
309: * ChangeLog: Summary: C=
310:
311: * imach.c: Summary: Some updates
312:
313: * imach.c: Summary: Before ncovmax
314:
315: * version.h: *** empty log message ***
316:
317: * imach.c: Summary: 0.99r18 unlimited number of individuals
318: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
319:
320: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
321:
322: * imach.c: Summary: Bug for young ages (<-30) will be in r17
323:
324: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
325:
326: * Makefile: Summary: 0.99r16
327:
328: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
329:
330: * imach.c: Summary: Some bugs fixed
331:
332: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
333:
334: * imach.c: Summary: Bug for young ages (<-30) will be in r17
335:
336: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
337:
338: * imach.c: Summary: Some bugs fixed
339:
340: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
341:
342: * imach.c:
343: Summary: Bug fixed by providing frequencies only for non missing covariates
344:
345: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
346:
347: * imach.c: Summary: some minor bugs
348:
349: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
350:
351: * README.txt: *** empty log message ***
352:
353: * imach.c: Summary: Some bugs fixed, valgrind tested
354:
355: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
356:
357: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
358:
359: * imach.c:
360: Summary: Computing mean and stdeviation of fixed quantitative variables
361:
362: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
363:
364: * imach.c: Summary: Some minor bugs fixed
365:
366: * version.h: *** empty log message ***
367:
368: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
369:
370: * imach.c: *** empty log message ***
371:
372: * imach.c: Summary: Adding second argument for quitting
373:
374: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
375:
376: * Makefile, README.txt, imach.c: Summary: 0.99r15
377: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
378:
379: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
380:
381: * imach.c: Summary: temporary working
382:
383: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
384:
385: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
386:
387: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
388:
389: * imach.c: Summary: BOM files can be read now
390:
391: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
392:
393: * imach.c: Summary: Graphs improvements
394:
395: * imach.c: Summary: Saito's color
396:
397: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
398:
399: * imach.c: Summary: Version 0.99r14
400:
401: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
402:
403: * imach.c: Summary: More documentation on projections
404:
405: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
406:
407: * imach.c: Summary: Some bug with rint
408:
409: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
410:
411: * imach.c: *** empty log message ***
412:
413: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
414:
415: * imach.c: Summary: Code into subroutine, cleanings
416:
417: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
418:
419: * imach.c:
420: Summary: backprojection and confidence intervals of backprevalence
421:
422: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
423:
424: * imach.c: Summary: temporary save for backprojection
425:
426: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
427:
428: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
429:
430: * imach.c: Summary: imach 0.99r13 Some bugs fixed
431:
432: * imach.c: Summary: Labels in graphs
433:
434: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
435:
436: * imach.c: Summary: to save
437:
438: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
439:
440: * imach.c: *** empty log message ***
441:
442: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
443:
444: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
445:
446: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
447:
448: * imach.c: Summary: Gnuplot indexations fixed (humm)
449:
450: * imach.c:
451: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
452:
453: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
454:
455: * imach.c: Summary: Version 0.99r12
456: Some cleanings, conformed with updated documentation.
457:
458: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
459:
460: * version.h: *** empty log message ***
461:
462: * version.h: Summary:0.99r11
463:
464: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
465:
466: * imach.c: Summary: Temp
467:
468: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
469:
470: * imach.c: Summary: Temporary
471:
472: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
473:
474: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
475:
476: * imach.c: Summary: Fixing data parameter line
477:
478: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
479:
480: * imach.c: Summary: 0.99 in progress
481:
482: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
483:
484: * imach.c: *** empty log message ***
485:
486: * imach.c: Summary: not working
487:
488: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
489:
490: * imach.c: Summary: continue
491:
492: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
493:
494: * imach.c: Summary: Starting values from frequencies
495:
496: * imach.c: *** empty log message ***
497:
498: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
499:
500: * imach.c: *** empty log message ***
501:
502: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
503:
504: * imach.c: Summary: Fixing a lots
505:
506: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
507:
508: * imach.c: Summary: gnuplot problem in Back projection to fix
509:
510: * imach.c: Summary: Better
511:
512: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
513:
514: * imach.c:
515: Summary: Improvement in Powell output in order to copy and paste
516:
517: * imach.c: Summary: Starting tests of 0.99
518:
519: * imach.c: Summary: to valgrind
520:
521: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
522:
523: * imach.c: *** empty log message ***
524:
525: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
526:
527: * imach.c: *** empty log message ***
528:
529: * imach.c: Summary: not working
530:
531: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
532:
533: * imach.c: Summary: not working
534:
535: * imach.c: Summary: Not working
536:
537: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
538:
539: * imach.c: Summary: Completing for func too
540:
541: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
542:
543: * imach.c: Summary: Fixing some arrays, still debugging
544:
545: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
546:
547: * imach.c:
548: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
549:
550: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
551:
552: * imach.c: Summary: temp
553:
554: * imach.c: Summary: saving but not running
555:
556: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
557:
558: * imach.c: Summary: Fixes
559:
560: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
561:
562: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
563:
564: * setup.iss, Makefile, version.h: *** empty log message ***
565:
566: * imach.c: Summary: temporary
567:
568: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
569:
570: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
571:
572: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
573:
574: * imach.c: Summary: minor bug
575:
576: * imach.c: Summary: 0.99r2
577:
578: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
579:
580: * imach.c: *** empty log message ***
581:
582: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
583:
584: * imach.c: Summary: 0.99 Back projections
585:
586: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
587:
588: * imach.c: Summary: Experimental backcast
589:
590: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
591:
592: * imach.c: Summary: 0.98r4 Warning and status=-2
593:
594: Version 0.98r4 is now:
595: - displaying an error when status is -1, date of interview unknown and date of death known;
596: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
597: Older changes concerning s=-2, dating from 2005 have been supersed.
598:
599: * Makefile: *** empty log message ***
600:
601: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
602:
603: * Makefile: *** empty log message ***
604:
605: * imach.c: Summary: 0.98r4 working
606:
607: * Makefile: Summary: linuxrpm added
608:
609: * Makefile: *** empty log message ***
610:
611: * imach.c: Summary: temporary not working
612:
613: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
614:
615: * imach.c: Summary: 0.98r4
616:
617: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
618:
619: * Makefile: *** empty log message ***
620:
621: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
622:
623: * Makefile:
624: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
625:
626: * imach.c: Summary: minor typo
627:
628: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
629:
630: Author: Nicolas Brouard
631:
632: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
633:
634: * imach.c: Summary: Start working on projected prevalences
635:
636: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
637:
638: * imach.c: Summary: Adding ftolpl parameter
639: Author: N Brouard
640:
641: We had difficulties to get smoothed confidence intervals. It was due
642: to the period prevalence which wasn't computed accurately. The inner
643: parameter ftolpl is now an outer parameter of the .imach parameter
644: file after estepm. If ftolpl is small 1.e-4 and estepm too,
645: computation are long.
646:
647: * version.h: *** empty log message ***
648:
649: * imach.c: Summary: temporary
650:
651: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
652:
653: * Makefile: *** empty log message ***
654:
655: * setup.iss.in: Summary: some new subdirs
656:
657: * imach.c: *** empty log message ***
658:
659: * setup.iss.in:
660: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
661:
662: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
663:
664: * imach.c: *** empty log message ***
665:
666: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
667:
668: * imach.c:
669: Summary: 0.98r3 some clarification for graphs on likelihood contributions
670:
671: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
672:
673: * imach.c: Summary: Some new graphs of contribution to likelihood
674:
675: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
676:
677: * Makefile:
678: Summary: Version read from version.h, itself read with cmake
679:
680: * imach.c: Summary: looking at better estimation of the hessian
681:
682: Also a better criteria for convergence to the period prevalence And
683: therefore adding the number of years needed to converge. (The
684: prevalence in any alive state shold sum to one
685:
686: * Makefile: *** empty log message ***
687:
688: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
689:
690: * imach.c:
691: Summary: Adding some overall graph on contribution to likelihood. Might change
692:
693: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
694:
695: * Makefile: *** empty log message ***
696:
697: * imach.c: Summary: 0.98r0
698:
699: - Some new graphs like survival functions
700: - Some bugs fixed like model=1+age+V2.
701:
702: * ChangeLog, Makefile: Summary: 0.98r0
703:
704: * CMakeLists.txt: Summary: Some tests for setup.iss
705:
706: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
707:
708: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
709:
710: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
711:
712: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
713:
714: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
715:
716: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
717:
718: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
719:
720: * imach.c (Module): Merging 1.61 to 1.162
721:
722: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
723:
724: * prevlim.h (Module):
725:
726: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
727:
728: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
729: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
730:
731: 2010-04-29 brouard <brouard@ined.fr>
732:
733: * imach.c (Module): Checking covariates for more complex models
734: than V1+V2. A lot of change to be done. Unstable.
735:
736: 2010-04-26 brouard <brouard@ined.fr>
737:
738: * imach.c (Module): merging some libgsl code. Fixing computation
739: of likelione (using inter/intrapolation if mle = 0) in order to
740: get same likelihood as if mle=1.
741: Some cleaning of code and comments added.
742:
743: 2009-10-29 brouard <brouard@ined.fr>
744:
745: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
746:
747: 2006-06-30 Brouard Nicolas <brouard@localhost>
748:
749: * imach.c (Module): Clarifications on computing e.j
750:
751: 2006-04-28 Brouard Nicolas <brouard@localhost>
752:
753: * imach.c (Module): Yes the sum of survivors was wrong since
754: imach-114 because nhstepm was no more computed in the age
755: loop. Now we define nhstepma in the age loop.
756: (Module): In order to speed up (in case of numerous covariates) we
757: compute health expectancies (without variances) in a first step
758: and then all the health expectancies with variances or standard
759: deviation (needs data from the Hessian matrices) which slows the
760: computation.
761: In the future we should be able to stop the program is only health
762: expectancies and graph are needed without standard deviations.
763:
764: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
765:
766: * imach.iss (Module):
767:
768: * imach.c (Module): bugs in evsi + population file added in htm output file
769:
770: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
771:
772: * imach.c (Module):
773:
774: 2006-03-20 Brouard Nicolas <brouard@localhost>
775:
776: * imach.c (Module): <title> changed, corresponds to .htm file
777: name. <head> headers where missing.
778:
779: * Makefile (Module): 0.98g
780:
781: * imach.c (Module): Weights can have a decimal point as for
782: English (a comma might work with a correct LC_NUMERIC environment,
783: otherwise the weight is truncated).
784: Modification of warning when the covariates values are not 0 or
785: 1.
786: Version 0.98g
787:
788: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
789:
790: * imach.c (Module): Comments concerning covariates added
791:
792: * noreg-setup.iss (Module): Version 0.98f
793:
794: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
795:
796: * imach.c (Module): refinements in the computation of lli if
797: status=-2 in order to have more reliable computation if stepm is
798: not 1 month. Version 0.98f
799:
800: 2006-03-15 Brouard Nicolas <brouard@localhost>
801:
802: * imach.c (Module): Bug if status = -2, the loglikelihood was
803: computed as likelihood omitting the logarithm. Version O.98e
804:
805: 2006-03-14 Brouard Nicolas <brouard@localhost>
806:
807: * imach.c (Module): varevsij Comments added explaining the second
808: table of variances if popbased=1 .
809: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
810: (Module): Function pstamp added
811: (Module): Version 0.98d
812:
813: 2006-03-06 Brouard Nicolas <brouard@localhost>
814:
815: * imach.c (Module): Variance-covariance wrong links and
816: varian-covariance of ej. is needed (Saito).
817:
818: 2006-02-27 Brouard Nicolas <brouard@localhost>
819:
820: * imach.c (Module): One freematrix added in mlikeli!
821:
822: 2006-02-26 Brouard Nicolas <brouard@localhost>
823:
824: * imach.c (Module): Some improvements in processing parameter
825: filename with strsep.
826:
827: 2006-02-24 Brouard Nicolas <brouard@localhost>
828:
829: * imach.c (Module): Memory leaks checks with valgrind and:
830: datafile was not closed, some imatrix were not freed and on matrix
831: allocation too.
832:
833: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
834:
835: * strsep.c (Module): Inclusion because not in mingw32!!!
836:
837: * setup.iss.in (Module): IMACHSETUPVERSION added
838:
839: * noreg-setup.iss (Module): added to cvs tree
840:
841: * Makefile (Module): IMACHSETUPVERSION added
842:
843: 2006-01-30 BROUARD Nicolas <brouard@localhost>
844:
845: * Makefile (Module, Module): Latest Makefile
846:
847: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
848:
849: 2006-01-27 BROUARD Nicolas <brouard@localhost>
850:
851: * noreg-setup.iss (Module): ADDED
852:
853: 2006-01-24 BROUARD Nicolas <brouard@localhost>
854:
855: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
856:
857: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
858:
859: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
860:
861: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
862:
863: 2005-09-30 <lievre@PC_00595>
864:
865: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
866: (Module): If the status is missing at the last wave but we know
867: that the person is alive, then we can code his/her status as -2
868: (instead of missing=-1 in earlier versions) and his/her
869: contributions to the likelihood is 1 - Prob of dying from last
870: health status (= 1-p13= p11+p12 in the easiest case of somebody in
871: the healthy state at last known wave). Version is 0.98
872:
873: 2004-05-20 Brouard Nicolas <brouard@localhost>
874:
875: * imach.c (Repository):
876: Agnes added a direct estimation of mortality (without the need of
877: computing period prevalence and differential mortality). Thus here
878: is version 0.97a which has been distributed to some people at
879: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
880: mortality using covariates is not done today. Estimating direct
881: mortality is a very different process because it doesn't need
882: interpolation because it is easy to get the lx from the force of
883: the mortality mux in the simplest case as for a Gompertz (log mux
884: = a + b*x . But we have been able to incorporate the new code
885: within former imach program (0.96d) without deteriorating too much
886: the understanding of the program.
887:
888: 2003-06-25 <brouard@BROUARD>
889:
890: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
891: exist so I changed back to asctime which exists.
892: (Module): Version 0.96b
893:
894: 2003-06-24 <brouard@BROUARD>
895:
896: * imach.c (Module): Some bugs corrected for windows. Also, when
897: mle=-1 a template is output in file "or"mypar.txt with the design
898: of the covariance matrix to be input.
899:
900: 2003-06-25 Brouard Nicolas <brouard@homebrou>
901:
902: * imach.c (Repository): Duplicated warning errors corrected.
903: (Repository): Elapsed time after each iteration is now output. It
904: helps to forecast when convergence will be reached. Elapsed time
905: is stamped in powell. We created a new html file for the graphs
906: concerning matrix of covariance. It has extension -cov.htm.
907:
908: 2003-06-23 Brouard Nicolas <brouard@homebrou>
909:
910: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
911:
912: 2003-06-18 Brouard Nicolas <brouard@homebrou>
913:
914: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
915:
916: 2003-06-17 Brouard Nicolas <brouard@homebrou>
917:
918:
919: * imach.c (Repository): Check when date of death was earlier that
920: current date of interview. It may happen when the death was just
921: prior to the death. In this case, dh was negative and likelihood
922: was wrong (infinity). We still send an "Error" but patch by
923: assuming that the date of death was just one stepm after the
924: interview.
925: (Repository): Because some people have very long ID (first column)
926: we changed int to long in num[] and we added a new lvector for
927: memory allocation. But we also truncated to 8 characters (left
928: truncation)
929:
930: (Repository): No more line truncation errors.
931:
932: 2003-06-14 Brouard Nicolas <brouard@homebrou>
933:
934: * imach.c (Repository): Add of a routine likelione (likelihood
935: only once) which prints on a text file
936: (ilk) the contributions to the likelihood for each
937: individual/wave.
938:
939: 2003-06-13 Brouard Nicolas <brouard@homebrou>
940: * imach.c (Repository): Replace "freqsummary" at a correct
941: place. It differs from routine "prevalence" which may be called
942: many times. Probs is memory consuming and must be used with
943: parcimony.
944:
945: 2003-06-17 <brouard@BROUARD>
946:
947: * timeval.h (Module): Added included file to make use of
948: gettimeofday working on win32 with cygwin.
949:
950: 2003-05-16 Brouard Nicolas <brouard@brouard>
951: * imach.c (Module): Insert of a warning if the delay between two
952: waves is negative.
953:
954: * imach.c (Module):
955:
956: 2003-05-03 <brouard@BROUARD>
957:
958: * imach.c: Some cleaning
959:
960: 2003-03-28 <brouard@BROUARD>
961: * imach.c (Module): In version up to 0.92 likelihood was computed
962: as if date of death was unknown. Death was treated as any other
963: health state: the date of the interview describes the actual state
964: and not the date of a change in health state. The former idea was
965: to consider that at each interview the state was recorded
966: (healthy, disable or death) and IMaCh was corrected; but when we
967: introduced the exact date of death then we should have modified
968: the contribution of an exact death to the likelihood. This new
969: contribution is smaller and very dependent of the step unit
970: stepm. It is no more the probability to die between last interview
971: and month of death but the probability to survive from last
972: interview up to one month before death multiplied by the
973: probability to die within a month. Thanks to Chris
974: Jackson for correcting this bug. Former versions increased
975: mortality artificially. The bad side is that we add another loop
976: which slows down the processing. The difference can be up to 10%
977: lower mortality.
978:
979: 2002-05-30 <brouard@BROUARD>
980:
981: * imach.c (Module): Add correlation matrix of one-step
982: probabilities and covariance matrix
1.54 brouard 983:
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