File:  [Local Repository] / imach / src / ChangeLog
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Mon Mar 20 10:52:52 2006 UTC (18 years, 3 months ago) by brouard
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    1: 2006-03-20  Brouard Nicolas  <brouard@localhost>
    2: 
    3: 	* imach.c (Module): <title> changed, corresponds to .htm file
    4: 	name. <head> headers where missing.
    5: 
    6: 	* Makefile (Module): 0.98g
    7: 
    8: 	* imach.c (Module): Weights can have a decimal point as for
    9: 	English (a comma might work with a correct LC_NUMERIC environment,
   10: 	otherwise the weight is truncated).
   11: 	Modification of warning when the covariates values are not 0 or
   12: 	1. 
   13: 	Version 0.98g
   14: 
   15: 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   16: 
   17: 	* imach.c (Module): Comments concerning covariates added
   18: 
   19: 	* noreg-setup.iss (Module): Version 0.98f
   20: 
   21: 	* Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
   22: 
   23: 	* imach.c (Module): refinements in the computation of lli if
   24: 	status=-2 in order to have more reliable computation if stepm is
   25: 	not 1 month. Version 0.98f
   26: 
   27: 2006-03-15  Brouard Nicolas  <brouard@localhost>
   28: 
   29: 	* imach.c (Module): Bug if status = -2, the loglikelihood was
   30: 	computed as likelihood omitting the logarithm. Version O.98e
   31: 
   32: 2006-03-14  Brouard Nicolas  <brouard@localhost>
   33: 
   34: 	* imach.c (Module): varevsij Comments added explaining the second
   35: 	table of variances if popbased=1 .
   36: 	(Module): Covariances of eij, ekl added, graphs fixed, new html link.
   37: 	(Module): Function pstamp added
   38: 	(Module): Version 0.98d 
   39: 
   40: 2006-03-06  Brouard Nicolas  <brouard@localhost>
   41: 
   42: 	* imach.c (Module): Variance-covariance wrong links and
   43: 	varian-covariance of ej. is needed (Saito).
   44: 
   45: 2006-02-27  Brouard Nicolas  <brouard@localhost>
   46: 
   47: 	* imach.c (Module): One freematrix added in mlikeli!
   48: 
   49: 2006-02-26  Brouard Nicolas  <brouard@localhost>
   50: 
   51: 	* imach.c (Module): Some improvements in processing parameter
   52: 	filename with strsep.
   53: 
   54: 2006-02-24  Brouard Nicolas  <brouard@localhost>
   55: 
   56: 	* imach.c (Module): Memory leaks checks with valgrind and:
   57: 	datafile was not closed, some imatrix were not freed and on matrix
   58: 	allocation too.
   59: 
   60: 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
   61: 
   62: 	* strsep.c (Module): Inclusion because not in mingw32!!!
   63: 
   64: 	* setup.iss.in (Module): IMACHSETUPVERSION added
   65: 
   66: 	* noreg-setup.iss (Module): added to cvs tree
   67: 
   68: 	* Makefile (Module): IMACHSETUPVERSION added
   69: 
   70: 2006-01-30  BROUARD Nicolas  <brouard@localhost>
   71: 
   72: 	* Makefile (Module, Module): Latest Makefile
   73: 
   74: 	* imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
   75: 
   76: 2006-01-27  BROUARD Nicolas  <brouard@localhost>
   77: 
   78: 	* noreg-setup.iss (Module): ADDED
   79: 
   80: 2006-01-24  BROUARD Nicolas  <brouard@localhost>
   81: 
   82: 	* imach.c (Module): Comments (lines starting with a #) are allowed in data.
   83: 
   84: 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
   85: 
   86: 	* Makefile (Module): Added Imach98.pmsp and howto crete a dmg
   87: 
   88: 	* createdmg.sh (Module): Creates a dmg disk for MaC OS/X
   89: 
   90: 2005-09-30    <lievre@PC_00595>
   91: 
   92: 	* imach.c (Module): sump fixed, loop imx fixed, and simplifications.
   93: 	(Module): If the status is missing at the last wave but we know
   94: 	that the person is alive, then we can code his/her status as -2
   95: 	(instead of missing=-1 in earlier versions) and his/her
   96: 	contributions to the likelihood is 1 - Prob of dying from last
   97: 	health status (= 1-p13= p11+p12 in the easiest case of somebody in
   98: 	the healthy state at last known wave). Version is 0.98 
   99: 
  100: 2004-05-20  Brouard Nicolas  <brouard@localhost>
  101: 
  102: 	* imach.c (Repository): 
  103: 	Agnes added a direct estimation of mortality (without the need of
  104: 	computing period prevalence and differential mortality). Thus here
  105: 	is version 0.97a which has been distributed to some people at
  106: 	REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
  107: 	mortality using covariates is not done today. Estimating direct
  108: 	mortality is a very different process because it doesn't need
  109: 	interpolation because it is easy to get the lx from the force of
  110: 	the mortality mux in the simplest case as for a Gompertz (log mux
  111: 	= a + b*x . But we have been able to incorporate the new code
  112: 	within former imach program (0.96d) without deteriorating too much
  113: 	the understanding of the program. 
  114: 
  115: 2003-06-25    <brouard@BROUARD>
  116: 
  117: 	* imach.c (Module): On windows (cygwin) function asctime_r doesn't
  118: 	exist so I changed back to asctime which exists.
  119: 	(Module): Version 0.96b
  120: 
  121: 2003-06-24    <brouard@BROUARD>
  122: 
  123: 	* imach.c (Module): Some bugs corrected for windows. Also, when
  124: 	mle=-1 a template is output in file "or"mypar.txt with the design
  125: 	of the covariance matrix to be input.
  126: 
  127: 2003-06-25  Brouard Nicolas  <brouard@homebrou>
  128: 
  129: 	* imach.c (Repository): Duplicated warning errors corrected.
  130: 	(Repository): Elapsed time after each iteration is now output. It
  131: 	helps to forecast when convergence will be reached. Elapsed time
  132: 	is stamped in powell.  We created a new html file for the graphs
  133: 	concerning matrix of covariance. It has extension -cov.htm.
  134: 
  135: 2003-06-23  Brouard Nicolas  <brouard@homebrou>
  136: 
  137: 	* imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
  138: 
  139: 2003-06-18  Brouard Nicolas  <brouard@homebrou>
  140: 
  141: 	* imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
  142: 
  143: 2003-06-17  Brouard Nicolas  <brouard@homebrou>
  144: 
  145: 
  146: 	* imach.c (Repository): Check when date of death was earlier that
  147: 	current date of interview. It may happen when the death was just
  148: 	prior to the death. In this case, dh was negative and likelihood
  149: 	was wrong (infinity). We still send an "Error" but patch by
  150: 	assuming that the date of death was just one stepm after the
  151: 	interview.
  152: 	(Repository): Because some people have very long ID (first column)
  153: 	we changed int to long in num[] and we added a new lvector for
  154: 	memory allocation. But we also truncated to 8 characters (left
  155: 	truncation)
  156: 
  157: 	(Repository): No more line truncation errors.
  158: 
  159: 2003-06-14  Brouard Nicolas  <brouard@homebrou>
  160: 
  161: 	* imach.c (Repository): Add of a routine likelione (likelihood
  162: 	only once) which prints on a text file
  163: 	(ilk) the contributions to the likelihood for each
  164: 	individual/wave.
  165: 
  166: 2003-06-13  Brouard Nicolas  <brouard@homebrou>
  167: 	* imach.c (Repository): Replace "freqsummary" at a correct
  168: 	place. It differs from routine "prevalence" which may be called
  169: 	many times. Probs is memory consuming and must be used with
  170: 	parcimony.
  171: 
  172: 2003-06-17    <brouard@BROUARD>
  173: 
  174: 	* timeval.h (Module): Added included file to make use of
  175: 	gettimeofday working on win32 with cygwin.
  176: 
  177: 2003-05-16  Brouard Nicolas  <brouard@brouard>
  178: 	* imach.c (Module): Insert of a warning if the delay between two
  179: 	waves is negative.
  180: 
  181: 	* imach.c (Module): 
  182: 
  183: 2003-05-03    <brouard@BROUARD>
  184: 
  185: 	* imach.c: Some cleaning
  186: 
  187: 2003-03-28    <brouard@BROUARD>
  188: 	* imach.c (Module): In version up to 0.92 likelihood was computed
  189: 	as if date of death was unknown. Death was treated as any other
  190: 	health state: the date of the interview describes the actual state
  191: 	and not the date of a change in health state. The former idea was
  192: 	to consider that at each interview the state was recorded
  193: 	(healthy, disable or death) and IMaCh was corrected; but when we
  194: 	introduced the exact date of death then we should have modified
  195: 	the contribution of an exact death to the likelihood. This new
  196: 	contribution is smaller and very dependent of the step unit
  197: 	stepm. It is no more the probability to die between last interview
  198: 	and month of death but the probability to survive from last
  199: 	interview up to one month before death multiplied by the
  200: 	probability to die within a month. Thanks to Chris
  201: 	Jackson for correcting this bug.  Former versions increased
  202: 	mortality artificially. The bad side is that we add another loop
  203: 
  204: 
  205: 	which slows down the processing. The difference can be up to 10%
  206: 
  207: 
  208: 	lower mortality.
  209: 
  210: 
  211: 
  212: 
  213: 
  214: 2002-05-30    <brouard@BROUARD>
  215: 
  216: 
  217: 
  218: 
  219: 
  220: 	* 
  221: 
  222: 
  223: 
  224: 
  225: 
  226: 	* imach.c (Module): Add correlation matrix of one-step
  227: 
  228: 
  229: 	probabilities and covariance matrix
  230: 
  231: 
  232: 
  233: 
  234: 

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