imach/src/ChangeLog - view

File: [Local Repository] / imach / src / ChangeLog
Revision 1.46: download - view: text, annotated - select for diffs
Tue Mar 15 18:40:36 2022 UTC (2 years, 7 months ago) by brouard
Branches: MAIN
CVS tags: HEAD

Summary:IMaCh-0.99r24

1: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr> 2: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett 3: 4: *2021-03-08 Nicolas Brouard <brouard@ined.fr> 5: 6: * ./ (Module): Fixed bug on result: 7: 8: *2021-02-20 Nicolas Brouard <brouard@ined.fr> 9: 10: * imach.c (Module): Fix bug on quitting after result lines! 11: (Module): Version 0.99r21 12: 13: 2021-02-12 Nicolas Brouard <brouard@ined.fr> 14: 15: * imach.c (Module): The use of a Windows BOM (huge) file is now an error 16: 17: 18: 2021-02-11 Nicolas Brouard <brouard@ined.fr> 19: 20: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed. 21: 22: 2020-02-22 Brouard Nicolas <brouard@ined.fr> 23: 24: * (Module): imach.c Update mle=-3 (for computing Life expectancy 25: and life table from the data without any state) 26: 27: 2019-05-20 Brouard Nicolas <brouard@ined.fr> 28: 29: * version.h: Summary: version 0.99.r19 30: 31: * imach.c: Summary: Projection syntax simplified 32: We can now start projections, forward or backward, from the mean date 33: of inteviews up to or down to a number of years of projection: 34: prevforecast=1 yearsfproj=15.3 mobil_average=0 35: or 36: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0 37: or 38: prevbackcast=1 yearsbproj=12.3 mobil_average=1 39: or 40: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1 41: 42: 2019-05-18 Brouard Nicolas <brouard@ined.fr> 43: 44: * imach.c: Summary: doxygen tex bug 45: 46: 2019-05-16 Brouard Nicolas <brouard@ined.fr> 47: 48: * imach.c: Summary: There was some wrong lines added 49: 50: 2019-05-09 Brouard Nicolas <brouard@ined.fr> 51: 52: * Makefile, imach.c: *** empty log message *** 53: 54: * ChangeLog: Summary: C= 55: 56: * imach.c: Summary: Some updates 57: 58: * imach.c: Summary: Before ncovmax 59: 60: * version.h: *** empty log message *** 61: 62: * imach.c: Summary: 0.99r18 unlimited number of individuals 63: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur. 64: 65: 2018-12-13 Brouard Nicolas <brouard@ined.fr> 66: 67: * imach.c: Summary: Bug for young ages (<-30) will be in r17 68: 69: 2018-12-05 Brouard Nicolas <brouard@ined.fr> 70: 71: * Makefile: Summary: 0.99r16 72: 73: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 74: 75: * imach.c: Summary: Some bugs fixed 76: 77: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 78: 79: * imach.c: Summary: Bug for young ages (<-30) will be in r17 80: 81: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 82: 83: * imach.c: Summary: Some bugs fixed 84: 85: 2018-05-01 Brouard Nicolas <brouard@ined.fr> 86: 87: * imach.c: 88: Summary: Bug fixed by providing frequencies only for non missing covariates 89: 90: 2018-04-27 Brouard Nicolas <brouard@ined.fr> 91: 92: * imach.c: Summary: some minor bugs 93: 94: 2018-04-21 Brouard Nicolas <brouard@ined.fr> 95: 96: * README.txt: *** empty log message *** 97: 98: * imach.c: Summary: Some bugs fixed, valgrind tested 99: 100: 2018-04-20 Brouard Nicolas <brouard@ined.fr> 101: 102: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16 103: 104: * imach.c: 105: Summary: Computing mean and stdeviation of fixed quantitative variables 106: 107: 2018-04-19 Brouard Nicolas <brouard@ined.fr> 108: 109: * imach.c: Summary: Some minor bugs fixed 110: 111: * version.h: *** empty log message *** 112: 113: 2018-02-27 Brouard Nicolas <brouard@ined.fr> 114: 115: * imach.c: *** empty log message *** 116: 117: * imach.c: Summary: Adding second argument for quitting 118: 119: 2018-02-21 Brouard Nicolas <brouard@ined.fr> 120: 121: * Makefile, README.txt, imach.c: Summary: 0.99r15 122: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c 123: 124: 2017-07-20 Brouard Nicolas <brouard@ined.fr> 125: 126: * imach.c: Summary: temporary working 127: 128: 2017-07-19 Brouard Nicolas <brouard@ined.fr> 129: 130: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?) 131: 132: 2017-07-17 Brouard Nicolas <brouard@ined.fr> 133: 134: * imach.c: Summary: BOM files can be read now 135: 136: 2017-06-30 Brouard Nicolas <brouard@ined.fr> 137: 138: * imach.c: Summary: Graphs improvements 139: 140: * imach.c: Summary: Saito's color 141: 142: 2017-06-29 Brouard Nicolas <brouard@ined.fr> 143: 144: * imach.c: Summary: Version 0.99r14 145: 146: 2017-06-27 Brouard Nicolas <brouard@ined.fr> 147: 148: * imach.c: Summary: More documentation on projections 149: 150: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow) 151: 152: * imach.c: Summary: Some bug with rint 153: 154: 2017-05-24 Brouard Nicolas <brouard@ined.fr> 155: 156: * imach.c: *** empty log message *** 157: 158: 2017-05-23 Brouard Nicolas <brouard@ined.fr> 159: 160: * imach.c: Summary: Code into subroutine, cleanings 161: 162: 2017-05-18 Brouard Nicolas <brouard@ined.fr> 163: 164: * imach.c: 165: Summary: backprojection and confidence intervals of backprevalence 166: 167: 2017-05-13 Brouard Nicolas <brouard@ined.fr> 168: 169: * imach.c: Summary: temporary save for backprojection 170: 171: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed) 172: 173: 2017-04-26 Brouard Nicolas <brouard@ined.fr> 174: 175: * imach.c: Summary: imach 0.99r13 Some bugs fixed 176: 177: * imach.c: Summary: Labels in graphs 178: 179: 2017-04-24 Brouard Nicolas <brouard@ined.fr> 180: 181: * imach.c: Summary: to save 182: 183: 2017-04-18 Brouard Nicolas <brouard@ined.fr> 184: 185: * imach.c: *** empty log message *** 186: 187: 2017-04-05 Brouard Nicolas <brouard@ined.fr> 188: 189: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1 190: 191: 2017-04-04 Brouard Nicolas <brouard@ined.fr> 192: 193: * imach.c: Summary: Gnuplot indexations fixed (humm) 194: 195: * imach.c: 196: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3 197: 198: 2017-04-03 Brouard Nicolas <brouard@ined.fr> 199: 200: * imach.c: Summary: Version 0.99r12 201: Some cleanings, conformed with updated documentation. 202: 203: 2017-03-30 Brouard Nicolas <brouard@ined.fr> 204: 205: * version.h: *** empty log message *** 206: 207: * version.h: Summary:0.99r11 208: 209: 2017-03-29 Brouard Nicolas <brouard@ined.fr> 210: 211: * imach.c: Summary: Temp 212: 213: 2017-03-27 Brouard Nicolas <brouard@ined.fr> 214: 215: * imach.c: Summary: Temporary 216: 217: 2017-03-08 Brouard Nicolas <brouard@ined.fr> 218: 219: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed 220: 221: * imach.c: Summary: Fixing data parameter line 222: 223: 2016-12-15 Brouard Nicolas <brouard@ined.fr> 224: 225: * imach.c: Summary: 0.99 in progress 226: 227: 2016-09-15 Brouard Nicolas <brouard@ined.fr> 228: 229: * imach.c: *** empty log message *** 230: 231: * imach.c: Summary: not working 232: 233: 2016-09-08 Brouard Nicolas <brouard@ined.fr> 234: 235: * imach.c: Summary: continue 236: 237: 2016-09-07 Brouard Nicolas <brouard@ined.fr> 238: 239: * imach.c: Summary: Starting values from frequencies 240: 241: * imach.c: *** empty log message *** 242: 243: 2016-09-02 Brouard Nicolas <brouard@ined.fr> 244: 245: * imach.c: *** empty log message *** 246: 247: 2016-08-30 Brouard Nicolas <brouard@ined.fr> 248: 249: * imach.c: Summary: Fixing a lots 250: 251: 2016-08-29 Brouard Nicolas <brouard@ined.fr> 252: 253: * imach.c: Summary: gnuplot problem in Back projection to fix 254: 255: * imach.c: Summary: Better 256: 257: 2016-08-26 Brouard Nicolas <brouard@ined.fr> 258: 259: * imach.c: 260: Summary: Improvement in Powell output in order to copy and paste 261: 262: * imach.c: Summary: Starting tests of 0.99 263: 264: * imach.c: Summary: to valgrind 265: 266: 2016-08-25 Brouard Nicolas <brouard@ined.fr> 267: 268: * imach.c: *** empty log message *** 269: 270: 2016-08-23 Brouard Nicolas <brouard@ined.fr> 271: 272: * imach.c: *** empty log message *** 273: 274: * imach.c: Summary: not working 275: 276: 2016-08-22 Brouard Nicolas <brouard@ined.fr> 277: 278: * imach.c: Summary: not working 279: 280: * imach.c: Summary: Not working 281: 282: 2016-07-23 Brouard Nicolas <brouard@ined.fr> 283: 284: * imach.c: Summary: Completing for func too 285: 286: 2016-07-22 Brouard Nicolas <brouard@ined.fr> 287: 288: * imach.c: Summary: Fixing some arrays, still debugging 289: 290: 2016-07-21 Brouard Nicolas <brouard@ined.fr> 291: 292: * imach.c: 293: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods 294: 295: 2016-07-12 Brouard Nicolas <brouard@ined.fr> 296: 297: * imach.c: Summary: temp 298: 299: * imach.c: Summary: saving but not running 300: 301: 2016-07-01 Brouard Nicolas <brouard@ined.fr> 302: 303: * imach.c: Summary: Fixes 304: 305: 2016-02-19 Brouard Nicolas <brouard@ined.fr> 306: 307: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7 308: 309: * setup.iss, Makefile, version.h: *** empty log message *** 310: 311: * imach.c: Summary: temporary 312: 313: 2016-02-17 Brouard Nicolas <brouard@ined.fr> 314: 315: * imach.c: Summary: Probably last 0.98 stable version 0.98r6 316: 317: 2016-02-16 Brouard Nicolas <brouard@ined.fr> 318: 319: * imach.c: Summary: minor bug 320: 321: * imach.c: Summary: 0.99r2 322: 323: 2016-02-15 Brouard Nicolas <brouard@ined.fr> 324: 325: * imach.c: *** empty log message *** 326: 327: 2016-02-12 Brouard Nicolas <brouard@ined.fr> 328: 329: * imach.c: Summary: 0.99 Back projections 330: 331: 2015-12-23 Brouard Nicolas <brouard@ined.fr> 332: 333: * imach.c: Summary: Experimental backcast 334: 335: 2015-12-18 Brouard Nicolas <brouard@ined.fr> 336: 337: * imach.c: Summary: 0.98r4 Warning and status=-2 338: 339: Version 0.98r4 is now: 340: - displaying an error when status is -1, date of interview unknown and date of death known; 341: - permitting a status -2 when the vital status is unknown at a known date of right truncation. 342: Older changes concerning s=-2, dating from 2005 have been supersed. 343: 344: * Makefile: *** empty log message *** 345: 346: 2015-12-16 Brouard Nicolas <brouard@ined.fr> 347: 348: * Makefile: *** empty log message *** 349: 350: * imach.c: Summary: 0.98r4 working 351: 352: * Makefile: Summary: linuxrpm added 353: 354: * Makefile: *** empty log message *** 355: 356: * imach.c: Summary: temporary not working 357: 358: 2015-12-11 Brouard Nicolas <brouard@ined.fr> 359: 360: * imach.c: Summary: 0.98r4 361: 362: 2015-12-08 Brouard Nicolas <brouard@ined.fr> 363: 364: * Makefile: *** empty log message *** 365: 366: 2015-11-21 Brouard Nicolas <brouard@ined.fr> 367: 368: * Makefile: 369: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more 370: 371: * imach.c: Summary: minor typo 372: 373: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional 374: 375: Author: Nicolas Brouard 376: 377: 2015-11-18 Brouard Nicolas <brouard@ined.fr> 378: 379: * imach.c: Summary: Start working on projected prevalences 380: 381: 2015-11-17 Brouard Nicolas <brouard@ined.fr> 382: 383: * imach.c: Summary: Adding ftolpl parameter 384: Author: N Brouard 385: 386: We had difficulties to get smoothed confidence intervals. It was due 387: to the period prevalence which wasn't computed accurately. The inner 388: parameter ftolpl is now an outer parameter of the .imach parameter 389: file after estepm. If ftolpl is small 1.e-4 and estepm too, 390: computation are long. 391: 392: * version.h: *** empty log message *** 393: 394: * imach.c: Summary: temporary 395: 396: 2015-10-27 Brouard Nicolas <brouard@ined.fr> 397: 398: * Makefile: *** empty log message *** 399: 400: * setup.iss.in: Summary: some new subdirs 401: 402: * imach.c: *** empty log message *** 403: 404: * setup.iss.in: 405: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts 406: 407: 2015-10-24 Brouard Nicolas <brouard@ined.fr> 408: 409: * imach.c: *** empty log message *** 410: 411: 2015-10-23 Brouard Nicolas <brouard@ined.fr> 412: 413: * imach.c: 414: Summary: 0.98r3 some clarification for graphs on likelihood contributions 415: 416: 2015-10-01 Brouard Nicolas <brouard@ined.fr> 417: 418: * imach.c: Summary: Some new graphs of contribution to likelihood 419: 420: 2015-09-30 Brouard Nicolas <brouard@ined.fr> 421: 422: * Makefile: 423: Summary: Version read from version.h, itself read with cmake 424: 425: * imach.c: Summary: looking at better estimation of the hessian 426: 427: Also a better criteria for convergence to the period prevalence And 428: therefore adding the number of years needed to converge. (The 429: prevalence in any alive state shold sum to one 430: 431: * Makefile: *** empty log message *** 432: 433: 2015-09-22 Brouard Nicolas <brouard@ined.fr> 434: 435: * imach.c: 436: Summary: Adding some overall graph on contribution to likelihood. Might change 437: 438: 2015-09-15 Brouard Nicolas <brouard@ined.fr> 439: 440: * Makefile: *** empty log message *** 441: 442: * imach.c: Summary: 0.98r0 443: 444: - Some new graphs like survival functions 445: - Some bugs fixed like model=1+age+V2. 446: 447: * ChangeLog, Makefile: Summary: 0.98r0 448: 449: * CMakeLists.txt: Summary: Some tests for setup.iss 450: 451: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr> 452: 453: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc 454: 455: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local> 456: 457: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line. 458: 459: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr> 460: 461: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih) 462: 463: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local> 464: 465: * imach.c (Module): Merging 1.61 to 1.162 466: 467: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr> 468: 469: * prevlim.h (Module): 470: 471: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local> 472: 473: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... 474: (Module): Version 0.98nR Running ok, but output format still only works for three covariates. 475: 476: 2010-04-29 brouard <brouard@ined.fr> 477: 478: * imach.c (Module): Checking covariates for more complex models 479: than V1+V2. A lot of change to be done. Unstable. 480: 481: 2010-04-26 brouard <brouard@ined.fr> 482: 483: * imach.c (Module): merging some libgsl code. Fixing computation 484: of likelione (using inter/intrapolation if mle = 0) in order to 485: get same likelihood as if mle=1. 486: Some cleaning of code and comments added. 487: 488: 2009-10-29 brouard <brouard@ined.fr> 489: 490: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code. 491: 492: 2006-06-30 Brouard Nicolas <brouard@localhost> 493: 494: * imach.c (Module): Clarifications on computing e.j 495: 496: 2006-04-28 Brouard Nicolas <brouard@localhost> 497: 498: * imach.c (Module): Yes the sum of survivors was wrong since 499: imach-114 because nhstepm was no more computed in the age 500: loop. Now we define nhstepma in the age loop. 501: (Module): In order to speed up (in case of numerous covariates) we 502: compute health expectancies (without variances) in a first step 503: and then all the health expectancies with variances or standard 504: deviation (needs data from the Hessian matrices) which slows the 505: computation. 506: In the future we should be able to stop the program is only health 507: expectancies and graph are needed without standard deviations. 508: 509: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr> 510: 511: * imach.iss (Module): 512: 513: * imach.c (Module): bugs in evsi + population file added in htm output file 514: 515: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr> 516: 517: * imach.c (Module): 518: 519: 2006-03-20 Brouard Nicolas <brouard@localhost> 520: 521: * imach.c (Module): <title> changed, corresponds to .htm file 522: name. <head> headers where missing. 523: 524: * Makefile (Module): 0.98g 525: 526: * imach.c (Module): Weights can have a decimal point as for 527: English (a comma might work with a correct LC_NUMERIC environment, 528: otherwise the weight is truncated). 529: Modification of warning when the covariates values are not 0 or 530: 1. 531: Version 0.98g 532: 533: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr> 534: 535: * imach.c (Module): Comments concerning covariates added 536: 537: * noreg-setup.iss (Module): Version 0.98f 538: 539: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup 540: 541: * imach.c (Module): refinements in the computation of lli if 542: status=-2 in order to have more reliable computation if stepm is 543: not 1 month. Version 0.98f 544: 545: 2006-03-15 Brouard Nicolas <brouard@localhost> 546: 547: * imach.c (Module): Bug if status = -2, the loglikelihood was 548: computed as likelihood omitting the logarithm. Version O.98e 549: 550: 2006-03-14 Brouard Nicolas <brouard@localhost> 551: 552: * imach.c (Module): varevsij Comments added explaining the second 553: table of variances if popbased=1 . 554: (Module): Covariances of eij, ekl added, graphs fixed, new html link. 555: (Module): Function pstamp added 556: (Module): Version 0.98d 557: 558: 2006-03-06 Brouard Nicolas <brouard@localhost> 559: 560: * imach.c (Module): Variance-covariance wrong links and 561: varian-covariance of ej. is needed (Saito). 562: 563: 2006-02-27 Brouard Nicolas <brouard@localhost> 564: 565: * imach.c (Module): One freematrix added in mlikeli! 566: 567: 2006-02-26 Brouard Nicolas <brouard@localhost> 568: 569: * imach.c (Module): Some improvements in processing parameter 570: filename with strsep. 571: 572: 2006-02-24 Brouard Nicolas <brouard@localhost> 573: 574: * imach.c (Module): Memory leaks checks with valgrind and: 575: datafile was not closed, some imatrix were not freed and on matrix 576: allocation too. 577: 578: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr> 579: 580: * strsep.c (Module): Inclusion because not in mingw32!!! 581: 582: * setup.iss.in (Module): IMACHSETUPVERSION added 583: 584: * noreg-setup.iss (Module): added to cvs tree 585: 586: * Makefile (Module): IMACHSETUPVERSION added 587: 588: 2006-01-30 BROUARD Nicolas <brouard@localhost> 589: 590: * Makefile (Module, Module): Latest Makefile 591: 592: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe 593: 594: 2006-01-27 BROUARD Nicolas <brouard@localhost> 595: 596: * noreg-setup.iss (Module): ADDED 597: 598: 2006-01-24 BROUARD Nicolas <brouard@localhost> 599: 600: * imach.c (Module): Comments (lines starting with a #) are allowed in data. 601: 602: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr> 603: 604: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg 605: 606: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X 607: 608: 2005-09-30 <lievre@PC_00595> 609: 610: * imach.c (Module): sump fixed, loop imx fixed, and simplifications. 611: (Module): If the status is missing at the last wave but we know 612: that the person is alive, then we can code his/her status as -2 613: (instead of missing=-1 in earlier versions) and his/her 614: contributions to the likelihood is 1 - Prob of dying from last 615: health status (= 1-p13= p11+p12 in the easiest case of somebody in 616: the healthy state at last known wave). Version is 0.98 617: 618: 2004-05-20 Brouard Nicolas <brouard@localhost> 619: 620: * imach.c (Repository): 621: Agnes added a direct estimation of mortality (without the need of 622: computing period prevalence and differential mortality). Thus here 623: is version 0.97a which has been distributed to some people at 624: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of 625: mortality using covariates is not done today. Estimating direct 626: mortality is a very different process because it doesn't need 627: interpolation because it is easy to get the lx from the force of 628: the mortality mux in the simplest case as for a Gompertz (log mux 629: = a + b*x . But we have been able to incorporate the new code 630: within former imach program (0.96d) without deteriorating too much 631: the understanding of the program. 632: 633: 2003-06-25 <brouard@BROUARD> 634: 635: * imach.c (Module): On windows (cygwin) function asctime_r doesn't 636: exist so I changed back to asctime which exists. 637: (Module): Version 0.96b 638: 639: 2003-06-24 <brouard@BROUARD> 640: 641: * imach.c (Module): Some bugs corrected for windows. Also, when 642: mle=-1 a template is output in file "or"mypar.txt with the design 643: of the covariance matrix to be input. 644: 645: 2003-06-25 Brouard Nicolas <brouard@homebrou> 646: 647: * imach.c (Repository): Duplicated warning errors corrected. 648: (Repository): Elapsed time after each iteration is now output. It 649: helps to forecast when convergence will be reached. Elapsed time 650: is stamped in powell. We created a new html file for the graphs 651: concerning matrix of covariance. It has extension -cov.htm. 652: 653: 2003-06-23 Brouard Nicolas <brouard@homebrou> 654: 655: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things. 656: 657: 2003-06-18 Brouard Nicolas <brouard@homebrou> 658: 659: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96 660: 661: 2003-06-17 Brouard Nicolas <brouard@homebrou> 662: 663: 664: * imach.c (Repository): Check when date of death was earlier that 665: current date of interview. It may happen when the death was just 666: prior to the death. In this case, dh was negative and likelihood 667: was wrong (infinity). We still send an "Error" but patch by 668: assuming that the date of death was just one stepm after the 669: interview. 670: (Repository): Because some people have very long ID (first column) 671: we changed int to long in num[] and we added a new lvector for 672: memory allocation. But we also truncated to 8 characters (left 673: truncation) 674: 675: (Repository): No more line truncation errors. 676: 677: 2003-06-14 Brouard Nicolas <brouard@homebrou> 678: 679: * imach.c (Repository): Add of a routine likelione (likelihood 680: only once) which prints on a text file 681: (ilk) the contributions to the likelihood for each 682: individual/wave. 683: 684: 2003-06-13 Brouard Nicolas <brouard@homebrou> 685: * imach.c (Repository): Replace "freqsummary" at a correct 686: place. It differs from routine "prevalence" which may be called 687: many times. Probs is memory consuming and must be used with 688: parcimony. 689: 690: 2003-06-17 <brouard@BROUARD> 691: 692: * timeval.h (Module): Added included file to make use of 693: gettimeofday working on win32 with cygwin. 694: 695: 2003-05-16 Brouard Nicolas <brouard@brouard> 696: * imach.c (Module): Insert of a warning if the delay between two 697: waves is negative. 698: 699: * imach.c (Module): 700: 701: 2003-05-03 <brouard@BROUARD> 702: 703: * imach.c: Some cleaning 704: 705: 2003-03-28 <brouard@BROUARD> 706: * imach.c (Module): In version up to 0.92 likelihood was computed 707: as if date of death was unknown. Death was treated as any other 708: health state: the date of the interview describes the actual state 709: and not the date of a change in health state. The former idea was 710: to consider that at each interview the state was recorded 711: (healthy, disable or death) and IMaCh was corrected; but when we 712: introduced the exact date of death then we should have modified 713: the contribution of an exact death to the likelihood. This new 714: contribution is smaller and very dependent of the step unit 715: stepm. It is no more the probability to die between last interview 716: and month of death but the probability to survive from last 717: interview up to one month before death multiplied by the 718: probability to die within a month. Thanks to Chris 719: Jackson for correcting this bug. Former versions increased 720: mortality artificially. The bad side is that we add another loop 721: which slows down the processing. The difference can be up to 10% 722: lower mortality. 723: 724: 2002-05-30 <brouard@BROUARD> 725: * 726: * imach.c (Module): Add correlation matrix of one-step 727: probabilities and covariance matrix 728: 729: 730: 731: 732: