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1: 2022-04-11 Nicolas Brouard <brouard@ined.fr> 2: 3: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed 4: 5: 2022-04-05 Brouard Nicolas <brouard@ined.fr> 6: 7: * imach.c (Module): Fixed covariates (dummy or quantitative) 8: with missing values have never been allowed but are ERRORS and 9: program quits. Standard deviations of fixed covariates were 10: wrongly computed. Mean and standard deviations of time varying 11: covariates are still not computed. 12: 13: 2022-03-17 Brouard Nicolas <brouard@ined.fr> 14: 15: * 99r25 Improvements in fixing discrepancies between covariates 16: missing in result line but in model. 17: 18: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr> 19: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett 20: 21: *2021-03-08 Nicolas Brouard <brouard@ined.fr> 22: 23: * ./ (Module): Fixed bug on result: 24: 25: *2021-02-20 Nicolas Brouard <brouard@ined.fr> 26: 27: * imach.c (Module): Fix bug on quitting after result lines! 28: (Module): Version 0.99r21 29: 30: 2021-02-12 Nicolas Brouard <brouard@ined.fr> 31: 32: * imach.c (Module): The use of a Windows BOM (huge) file is now an error 33: 34: 35: 2021-02-11 Nicolas Brouard <brouard@ined.fr> 36: 37: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed. 38: 39: 2020-02-22 Brouard Nicolas <brouard@ined.fr> 40: 41: * (Module): imach.c Update mle=-3 (for computing Life expectancy 42: and life table from the data without any state) 43: 44: 2019-05-20 Brouard Nicolas <brouard@ined.fr> 45: 46: * version.h: Summary: version 0.99.r19 47: 48: * imach.c: Summary: Projection syntax simplified 49: We can now start projections, forward or backward, from the mean date 50: of inteviews up to or down to a number of years of projection: 51: prevforecast=1 yearsfproj=15.3 mobil_average=0 52: or 53: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0 54: or 55: prevbackcast=1 yearsbproj=12.3 mobil_average=1 56: or 57: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1 58: 59: 2019-05-18 Brouard Nicolas <brouard@ined.fr> 60: 61: * imach.c: Summary: doxygen tex bug 62: 63: 2019-05-16 Brouard Nicolas <brouard@ined.fr> 64: 65: * imach.c: Summary: There was some wrong lines added 66: 67: 2019-05-09 Brouard Nicolas <brouard@ined.fr> 68: 69: * Makefile, imach.c: *** empty log message *** 70: 71: * ChangeLog: Summary: C= 72: 73: * imach.c: Summary: Some updates 74: 75: * imach.c: Summary: Before ncovmax 76: 77: * version.h: *** empty log message *** 78: 79: * imach.c: Summary: 0.99r18 unlimited number of individuals 80: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur. 81: 82: 2018-12-13 Brouard Nicolas <brouard@ined.fr> 83: 84: * imach.c: Summary: Bug for young ages (<-30) will be in r17 85: 86: 2018-12-05 Brouard Nicolas <brouard@ined.fr> 87: 88: * Makefile: Summary: 0.99r16 89: 90: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 91: 92: * imach.c: Summary: Some bugs fixed 93: 94: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 95: 96: * imach.c: Summary: Bug for young ages (<-30) will be in r17 97: 98: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 99: 100: * imach.c: Summary: Some bugs fixed 101: 102: 2018-05-01 Brouard Nicolas <brouard@ined.fr> 103: 104: * imach.c: 105: Summary: Bug fixed by providing frequencies only for non missing covariates 106: 107: 2018-04-27 Brouard Nicolas <brouard@ined.fr> 108: 109: * imach.c: Summary: some minor bugs 110: 111: 2018-04-21 Brouard Nicolas <brouard@ined.fr> 112: 113: * README.txt: *** empty log message *** 114: 115: * imach.c: Summary: Some bugs fixed, valgrind tested 116: 117: 2018-04-20 Brouard Nicolas <brouard@ined.fr> 118: 119: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16 120: 121: * imach.c: 122: Summary: Computing mean and stdeviation of fixed quantitative variables 123: 124: 2018-04-19 Brouard Nicolas <brouard@ined.fr> 125: 126: * imach.c: Summary: Some minor bugs fixed 127: 128: * version.h: *** empty log message *** 129: 130: 2018-02-27 Brouard Nicolas <brouard@ined.fr> 131: 132: * imach.c: *** empty log message *** 133: 134: * imach.c: Summary: Adding second argument for quitting 135: 136: 2018-02-21 Brouard Nicolas <brouard@ined.fr> 137: 138: * Makefile, README.txt, imach.c: Summary: 0.99r15 139: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c 140: 141: 2017-07-20 Brouard Nicolas <brouard@ined.fr> 142: 143: * imach.c: Summary: temporary working 144: 145: 2017-07-19 Brouard Nicolas <brouard@ined.fr> 146: 147: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?) 148: 149: 2017-07-17 Brouard Nicolas <brouard@ined.fr> 150: 151: * imach.c: Summary: BOM files can be read now 152: 153: 2017-06-30 Brouard Nicolas <brouard@ined.fr> 154: 155: * imach.c: Summary: Graphs improvements 156: 157: * imach.c: Summary: Saito's color 158: 159: 2017-06-29 Brouard Nicolas <brouard@ined.fr> 160: 161: * imach.c: Summary: Version 0.99r14 162: 163: 2017-06-27 Brouard Nicolas <brouard@ined.fr> 164: 165: * imach.c: Summary: More documentation on projections 166: 167: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow) 168: 169: * imach.c: Summary: Some bug with rint 170: 171: 2017-05-24 Brouard Nicolas <brouard@ined.fr> 172: 173: * imach.c: *** empty log message *** 174: 175: 2017-05-23 Brouard Nicolas <brouard@ined.fr> 176: 177: * imach.c: Summary: Code into subroutine, cleanings 178: 179: 2017-05-18 Brouard Nicolas <brouard@ined.fr> 180: 181: * imach.c: 182: Summary: backprojection and confidence intervals of backprevalence 183: 184: 2017-05-13 Brouard Nicolas <brouard@ined.fr> 185: 186: * imach.c: Summary: temporary save for backprojection 187: 188: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed) 189: 190: 2017-04-26 Brouard Nicolas <brouard@ined.fr> 191: 192: * imach.c: Summary: imach 0.99r13 Some bugs fixed 193: 194: * imach.c: Summary: Labels in graphs 195: 196: 2017-04-24 Brouard Nicolas <brouard@ined.fr> 197: 198: * imach.c: Summary: to save 199: 200: 2017-04-18 Brouard Nicolas <brouard@ined.fr> 201: 202: * imach.c: *** empty log message *** 203: 204: 2017-04-05 Brouard Nicolas <brouard@ined.fr> 205: 206: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1 207: 208: 2017-04-04 Brouard Nicolas <brouard@ined.fr> 209: 210: * imach.c: Summary: Gnuplot indexations fixed (humm) 211: 212: * imach.c: 213: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3 214: 215: 2017-04-03 Brouard Nicolas <brouard@ined.fr> 216: 217: * imach.c: Summary: Version 0.99r12 218: Some cleanings, conformed with updated documentation. 219: 220: 2017-03-30 Brouard Nicolas <brouard@ined.fr> 221: 222: * version.h: *** empty log message *** 223: 224: * version.h: Summary:0.99r11 225: 226: 2017-03-29 Brouard Nicolas <brouard@ined.fr> 227: 228: * imach.c: Summary: Temp 229: 230: 2017-03-27 Brouard Nicolas <brouard@ined.fr> 231: 232: * imach.c: Summary: Temporary 233: 234: 2017-03-08 Brouard Nicolas <brouard@ined.fr> 235: 236: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed 237: 238: * imach.c: Summary: Fixing data parameter line 239: 240: 2016-12-15 Brouard Nicolas <brouard@ined.fr> 241: 242: * imach.c: Summary: 0.99 in progress 243: 244: 2016-09-15 Brouard Nicolas <brouard@ined.fr> 245: 246: * imach.c: *** empty log message *** 247: 248: * imach.c: Summary: not working 249: 250: 2016-09-08 Brouard Nicolas <brouard@ined.fr> 251: 252: * imach.c: Summary: continue 253: 254: 2016-09-07 Brouard Nicolas <brouard@ined.fr> 255: 256: * imach.c: Summary: Starting values from frequencies 257: 258: * imach.c: *** empty log message *** 259: 260: 2016-09-02 Brouard Nicolas <brouard@ined.fr> 261: 262: * imach.c: *** empty log message *** 263: 264: 2016-08-30 Brouard Nicolas <brouard@ined.fr> 265: 266: * imach.c: Summary: Fixing a lots 267: 268: 2016-08-29 Brouard Nicolas <brouard@ined.fr> 269: 270: * imach.c: Summary: gnuplot problem in Back projection to fix 271: 272: * imach.c: Summary: Better 273: 274: 2016-08-26 Brouard Nicolas <brouard@ined.fr> 275: 276: * imach.c: 277: Summary: Improvement in Powell output in order to copy and paste 278: 279: * imach.c: Summary: Starting tests of 0.99 280: 281: * imach.c: Summary: to valgrind 282: 283: 2016-08-25 Brouard Nicolas <brouard@ined.fr> 284: 285: * imach.c: *** empty log message *** 286: 287: 2016-08-23 Brouard Nicolas <brouard@ined.fr> 288: 289: * imach.c: *** empty log message *** 290: 291: * imach.c: Summary: not working 292: 293: 2016-08-22 Brouard Nicolas <brouard@ined.fr> 294: 295: * imach.c: Summary: not working 296: 297: * imach.c: Summary: Not working 298: 299: 2016-07-23 Brouard Nicolas <brouard@ined.fr> 300: 301: * imach.c: Summary: Completing for func too 302: 303: 2016-07-22 Brouard Nicolas <brouard@ined.fr> 304: 305: * imach.c: Summary: Fixing some arrays, still debugging 306: 307: 2016-07-21 Brouard Nicolas <brouard@ined.fr> 308: 309: * imach.c: 310: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods 311: 312: 2016-07-12 Brouard Nicolas <brouard@ined.fr> 313: 314: * imach.c: Summary: temp 315: 316: * imach.c: Summary: saving but not running 317: 318: 2016-07-01 Brouard Nicolas <brouard@ined.fr> 319: 320: * imach.c: Summary: Fixes 321: 322: 2016-02-19 Brouard Nicolas <brouard@ined.fr> 323: 324: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7 325: 326: * setup.iss, Makefile, version.h: *** empty log message *** 327: 328: * imach.c: Summary: temporary 329: 330: 2016-02-17 Brouard Nicolas <brouard@ined.fr> 331: 332: * imach.c: Summary: Probably last 0.98 stable version 0.98r6 333: 334: 2016-02-16 Brouard Nicolas <brouard@ined.fr> 335: 336: * imach.c: Summary: minor bug 337: 338: * imach.c: Summary: 0.99r2 339: 340: 2016-02-15 Brouard Nicolas <brouard@ined.fr> 341: 342: * imach.c: *** empty log message *** 343: 344: 2016-02-12 Brouard Nicolas <brouard@ined.fr> 345: 346: * imach.c: Summary: 0.99 Back projections 347: 348: 2015-12-23 Brouard Nicolas <brouard@ined.fr> 349: 350: * imach.c: Summary: Experimental backcast 351: 352: 2015-12-18 Brouard Nicolas <brouard@ined.fr> 353: 354: * imach.c: Summary: 0.98r4 Warning and status=-2 355: 356: Version 0.98r4 is now: 357: - displaying an error when status is -1, date of interview unknown and date of death known; 358: - permitting a status -2 when the vital status is unknown at a known date of right truncation. 359: Older changes concerning s=-2, dating from 2005 have been supersed. 360: 361: * Makefile: *** empty log message *** 362: 363: 2015-12-16 Brouard Nicolas <brouard@ined.fr> 364: 365: * Makefile: *** empty log message *** 366: 367: * imach.c: Summary: 0.98r4 working 368: 369: * Makefile: Summary: linuxrpm added 370: 371: * Makefile: *** empty log message *** 372: 373: * imach.c: Summary: temporary not working 374: 375: 2015-12-11 Brouard Nicolas <brouard@ined.fr> 376: 377: * imach.c: Summary: 0.98r4 378: 379: 2015-12-08 Brouard Nicolas <brouard@ined.fr> 380: 381: * Makefile: *** empty log message *** 382: 383: 2015-11-21 Brouard Nicolas <brouard@ined.fr> 384: 385: * Makefile: 386: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more 387: 388: * imach.c: Summary: minor typo 389: 390: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional 391: 392: Author: Nicolas Brouard 393: 394: 2015-11-18 Brouard Nicolas <brouard@ined.fr> 395: 396: * imach.c: Summary: Start working on projected prevalences 397: 398: 2015-11-17 Brouard Nicolas <brouard@ined.fr> 399: 400: * imach.c: Summary: Adding ftolpl parameter 401: Author: N Brouard 402: 403: We had difficulties to get smoothed confidence intervals. It was due 404: to the period prevalence which wasn't computed accurately. The inner 405: parameter ftolpl is now an outer parameter of the .imach parameter 406: file after estepm. If ftolpl is small 1.e-4 and estepm too, 407: computation are long. 408: 409: * version.h: *** empty log message *** 410: 411: * imach.c: Summary: temporary 412: 413: 2015-10-27 Brouard Nicolas <brouard@ined.fr> 414: 415: * Makefile: *** empty log message *** 416: 417: * setup.iss.in: Summary: some new subdirs 418: 419: * imach.c: *** empty log message *** 420: 421: * setup.iss.in: 422: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts 423: 424: 2015-10-24 Brouard Nicolas <brouard@ined.fr> 425: 426: * imach.c: *** empty log message *** 427: 428: 2015-10-23 Brouard Nicolas <brouard@ined.fr> 429: 430: * imach.c: 431: Summary: 0.98r3 some clarification for graphs on likelihood contributions 432: 433: 2015-10-01 Brouard Nicolas <brouard@ined.fr> 434: 435: * imach.c: Summary: Some new graphs of contribution to likelihood 436: 437: 2015-09-30 Brouard Nicolas <brouard@ined.fr> 438: 439: * Makefile: 440: Summary: Version read from version.h, itself read with cmake 441: 442: * imach.c: Summary: looking at better estimation of the hessian 443: 444: Also a better criteria for convergence to the period prevalence And 445: therefore adding the number of years needed to converge. (The 446: prevalence in any alive state shold sum to one 447: 448: * Makefile: *** empty log message *** 449: 450: 2015-09-22 Brouard Nicolas <brouard@ined.fr> 451: 452: * imach.c: 453: Summary: Adding some overall graph on contribution to likelihood. Might change 454: 455: 2015-09-15 Brouard Nicolas <brouard@ined.fr> 456: 457: * Makefile: *** empty log message *** 458: 459: * imach.c: Summary: 0.98r0 460: 461: - Some new graphs like survival functions 462: - Some bugs fixed like model=1+age+V2. 463: 464: * ChangeLog, Makefile: Summary: 0.98r0 465: 466: * CMakeLists.txt: Summary: Some tests for setup.iss 467: 468: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr> 469: 470: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc 471: 472: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local> 473: 474: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line. 475: 476: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr> 477: 478: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih) 479: 480: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local> 481: 482: * imach.c (Module): Merging 1.61 to 1.162 483: 484: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr> 485: 486: * prevlim.h (Module): 487: 488: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local> 489: 490: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... 491: (Module): Version 0.98nR Running ok, but output format still only works for three covariates. 492: 493: 2010-04-29 brouard <brouard@ined.fr> 494: 495: * imach.c (Module): Checking covariates for more complex models 496: than V1+V2. A lot of change to be done. Unstable. 497: 498: 2010-04-26 brouard <brouard@ined.fr> 499: 500: * imach.c (Module): merging some libgsl code. Fixing computation 501: of likelione (using inter/intrapolation if mle = 0) in order to 502: get same likelihood as if mle=1. 503: Some cleaning of code and comments added. 504: 505: 2009-10-29 brouard <brouard@ined.fr> 506: 507: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code. 508: 509: 2006-06-30 Brouard Nicolas <brouard@localhost> 510: 511: * imach.c (Module): Clarifications on computing e.j 512: 513: 2006-04-28 Brouard Nicolas <brouard@localhost> 514: 515: * imach.c (Module): Yes the sum of survivors was wrong since 516: imach-114 because nhstepm was no more computed in the age 517: loop. Now we define nhstepma in the age loop. 518: (Module): In order to speed up (in case of numerous covariates) we 519: compute health expectancies (without variances) in a first step 520: and then all the health expectancies with variances or standard 521: deviation (needs data from the Hessian matrices) which slows the 522: computation. 523: In the future we should be able to stop the program is only health 524: expectancies and graph are needed without standard deviations. 525: 526: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr> 527: 528: * imach.iss (Module): 529: 530: * imach.c (Module): bugs in evsi + population file added in htm output file 531: 532: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr> 533: 534: * imach.c (Module): 535: 536: 2006-03-20 Brouard Nicolas <brouard@localhost> 537: 538: * imach.c (Module): <title> changed, corresponds to .htm file 539: name. <head> headers where missing. 540: 541: * Makefile (Module): 0.98g 542: 543: * imach.c (Module): Weights can have a decimal point as for 544: English (a comma might work with a correct LC_NUMERIC environment, 545: otherwise the weight is truncated). 546: Modification of warning when the covariates values are not 0 or 547: 1. 548: Version 0.98g 549: 550: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr> 551: 552: * imach.c (Module): Comments concerning covariates added 553: 554: * noreg-setup.iss (Module): Version 0.98f 555: 556: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup 557: 558: * imach.c (Module): refinements in the computation of lli if 559: status=-2 in order to have more reliable computation if stepm is 560: not 1 month. Version 0.98f 561: 562: 2006-03-15 Brouard Nicolas <brouard@localhost> 563: 564: * imach.c (Module): Bug if status = -2, the loglikelihood was 565: computed as likelihood omitting the logarithm. Version O.98e 566: 567: 2006-03-14 Brouard Nicolas <brouard@localhost> 568: 569: * imach.c (Module): varevsij Comments added explaining the second 570: table of variances if popbased=1 . 571: (Module): Covariances of eij, ekl added, graphs fixed, new html link. 572: (Module): Function pstamp added 573: (Module): Version 0.98d 574: 575: 2006-03-06 Brouard Nicolas <brouard@localhost> 576: 577: * imach.c (Module): Variance-covariance wrong links and 578: varian-covariance of ej. is needed (Saito). 579: 580: 2006-02-27 Brouard Nicolas <brouard@localhost> 581: 582: * imach.c (Module): One freematrix added in mlikeli! 583: 584: 2006-02-26 Brouard Nicolas <brouard@localhost> 585: 586: * imach.c (Module): Some improvements in processing parameter 587: filename with strsep. 588: 589: 2006-02-24 Brouard Nicolas <brouard@localhost> 590: 591: * imach.c (Module): Memory leaks checks with valgrind and: 592: datafile was not closed, some imatrix were not freed and on matrix 593: allocation too. 594: 595: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr> 596: 597: * strsep.c (Module): Inclusion because not in mingw32!!! 598: 599: * setup.iss.in (Module): IMACHSETUPVERSION added 600: 601: * noreg-setup.iss (Module): added to cvs tree 602: 603: * Makefile (Module): IMACHSETUPVERSION added 604: 605: 2006-01-30 BROUARD Nicolas <brouard@localhost> 606: 607: * Makefile (Module, Module): Latest Makefile 608: 609: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe 610: 611: 2006-01-27 BROUARD Nicolas <brouard@localhost> 612: 613: * noreg-setup.iss (Module): ADDED 614: 615: 2006-01-24 BROUARD Nicolas <brouard@localhost> 616: 617: * imach.c (Module): Comments (lines starting with a #) are allowed in data. 618: 619: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr> 620: 621: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg 622: 623: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X 624: 625: 2005-09-30 <lievre@PC_00595> 626: 627: * imach.c (Module): sump fixed, loop imx fixed, and simplifications. 628: (Module): If the status is missing at the last wave but we know 629: that the person is alive, then we can code his/her status as -2 630: (instead of missing=-1 in earlier versions) and his/her 631: contributions to the likelihood is 1 - Prob of dying from last 632: health status (= 1-p13= p11+p12 in the easiest case of somebody in 633: the healthy state at last known wave). Version is 0.98 634: 635: 2004-05-20 Brouard Nicolas <brouard@localhost> 636: 637: * imach.c (Repository): 638: Agnes added a direct estimation of mortality (without the need of 639: computing period prevalence and differential mortality). Thus here 640: is version 0.97a which has been distributed to some people at 641: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of 642: mortality using covariates is not done today. Estimating direct 643: mortality is a very different process because it doesn't need 644: interpolation because it is easy to get the lx from the force of 645: the mortality mux in the simplest case as for a Gompertz (log mux 646: = a + b*x . But we have been able to incorporate the new code 647: within former imach program (0.96d) without deteriorating too much 648: the understanding of the program. 649: 650: 2003-06-25 <brouard@BROUARD> 651: 652: * imach.c (Module): On windows (cygwin) function asctime_r doesn't 653: exist so I changed back to asctime which exists. 654: (Module): Version 0.96b 655: 656: 2003-06-24 <brouard@BROUARD> 657: 658: * imach.c (Module): Some bugs corrected for windows. Also, when 659: mle=-1 a template is output in file "or"mypar.txt with the design 660: of the covariance matrix to be input. 661: 662: 2003-06-25 Brouard Nicolas <brouard@homebrou> 663: 664: * imach.c (Repository): Duplicated warning errors corrected. 665: (Repository): Elapsed time after each iteration is now output. It 666: helps to forecast when convergence will be reached. Elapsed time 667: is stamped in powell. We created a new html file for the graphs 668: concerning matrix of covariance. It has extension -cov.htm. 669: 670: 2003-06-23 Brouard Nicolas <brouard@homebrou> 671: 672: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things. 673: 674: 2003-06-18 Brouard Nicolas <brouard@homebrou> 675: 676: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96 677: 678: 2003-06-17 Brouard Nicolas <brouard@homebrou> 679: 680: 681: * imach.c (Repository): Check when date of death was earlier that 682: current date of interview. It may happen when the death was just 683: prior to the death. In this case, dh was negative and likelihood 684: was wrong (infinity). We still send an "Error" but patch by 685: assuming that the date of death was just one stepm after the 686: interview. 687: (Repository): Because some people have very long ID (first column) 688: we changed int to long in num[] and we added a new lvector for 689: memory allocation. But we also truncated to 8 characters (left 690: truncation) 691: 692: (Repository): No more line truncation errors. 693: 694: 2003-06-14 Brouard Nicolas <brouard@homebrou> 695: 696: * imach.c (Repository): Add of a routine likelione (likelihood 697: only once) which prints on a text file 698: (ilk) the contributions to the likelihood for each 699: individual/wave. 700: 701: 2003-06-13 Brouard Nicolas <brouard@homebrou> 702: * imach.c (Repository): Replace "freqsummary" at a correct 703: place. It differs from routine "prevalence" which may be called 704: many times. Probs is memory consuming and must be used with 705: parcimony. 706: 707: 2003-06-17 <brouard@BROUARD> 708: 709: * timeval.h (Module): Added included file to make use of 710: gettimeofday working on win32 with cygwin. 711: 712: 2003-05-16 Brouard Nicolas <brouard@brouard> 713: * imach.c (Module): Insert of a warning if the delay between two 714: waves is negative. 715: 716: * imach.c (Module): 717: 718: 2003-05-03 <brouard@BROUARD> 719: 720: * imach.c: Some cleaning 721: 722: 2003-03-28 <brouard@BROUARD> 723: * imach.c (Module): In version up to 0.92 likelihood was computed 724: as if date of death was unknown. Death was treated as any other 725: health state: the date of the interview describes the actual state 726: and not the date of a change in health state. The former idea was 727: to consider that at each interview the state was recorded 728: (healthy, disable or death) and IMaCh was corrected; but when we 729: introduced the exact date of death then we should have modified 730: the contribution of an exact death to the likelihood. This new 731: contribution is smaller and very dependent of the step unit 732: stepm. It is no more the probability to die between last interview 733: and month of death but the probability to survive from last 734: interview up to one month before death multiplied by the 735: probability to die within a month. Thanks to Chris 736: Jackson for correcting this bug. Former versions increased 737: mortality artificially. The bad side is that we add another loop 738: which slows down the processing. The difference can be up to 10% 739: lower mortality. 740: 741: 2002-05-30 <brouard@BROUARD> 742: * 743: * imach.c (Module): Add correlation matrix of one-step 744: probabilities and covariance matrix 745: 746: 747: 748: 749: