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1: 2022-05-24 Nicolas Brouard <brouard@ined.fr> 2: 3: * imach.c (Module): Some attempts to find a bug of wrong estimates 4: of confidencce intervals with product in the equation modelC 5: 6: 2022-05-15 Nicolas Brouard <brouard@ined.fr> 7: 8: * imach.c (Module): Some minor improvements 9: 10: 2022-04-13 Brouard Nicolas <brouard@brouard.name> 11: 12: * imach.c (Module): Adding link to text data files 13: 14: 2022-04-11 Nicolas Brouard <brouard@ined.fr> 15: 16: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed 17: 18: 2022-04-05 Brouard Nicolas <brouard@ined.fr> 19: 20: * imach.c (Module): Fixed covariates (dummy or quantitative) 21: with missing values have never been allowed but are ERRORS and 22: program quits. Standard deviations of fixed covariates were 23: wrongly computed. Mean and standard deviations of time varying 24: covariates are still not computed. 25: 26: 2022-03-17 Brouard Nicolas <brouard@ined.fr> 27: 28: * 99r25 Improvements in fixing discrepancies between covariates 29: missing in result line but in model. 30: 31: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr> 32: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett 33: 34: *2021-03-08 Nicolas Brouard <brouard@ined.fr> 35: 36: * ./ (Module): Fixed bug on result: 37: 38: *2021-02-20 Nicolas Brouard <brouard@ined.fr> 39: 40: * imach.c (Module): Fix bug on quitting after result lines! 41: (Module): Version 0.99r21 42: 43: 2021-02-12 Nicolas Brouard <brouard@ined.fr> 44: 45: * imach.c (Module): The use of a Windows BOM (huge) file is now an error 46: 47: 48: 2021-02-11 Nicolas Brouard <brouard@ined.fr> 49: 50: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed. 51: 52: 2020-02-22 Brouard Nicolas <brouard@ined.fr> 53: 54: * (Module): imach.c Update mle=-3 (for computing Life expectancy 55: and life table from the data without any state) 56: 57: 2019-05-20 Brouard Nicolas <brouard@ined.fr> 58: 59: * version.h: Summary: version 0.99.r19 60: 61: * imach.c: Summary: Projection syntax simplified 62: We can now start projections, forward or backward, from the mean date 63: of inteviews up to or down to a number of years of projection: 64: prevforecast=1 yearsfproj=15.3 mobil_average=0 65: or 66: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0 67: or 68: prevbackcast=1 yearsbproj=12.3 mobil_average=1 69: or 70: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1 71: 72: 2019-05-18 Brouard Nicolas <brouard@ined.fr> 73: 74: * imach.c: Summary: doxygen tex bug 75: 76: 2019-05-16 Brouard Nicolas <brouard@ined.fr> 77: 78: * imach.c: Summary: There was some wrong lines added 79: 80: 2019-05-09 Brouard Nicolas <brouard@ined.fr> 81: 82: * Makefile, imach.c: *** empty log message *** 83: 84: * ChangeLog: Summary: C= 85: 86: * imach.c: Summary: Some updates 87: 88: * imach.c: Summary: Before ncovmax 89: 90: * version.h: *** empty log message *** 91: 92: * imach.c: Summary: 0.99r18 unlimited number of individuals 93: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur. 94: 95: 2018-12-13 Brouard Nicolas <brouard@ined.fr> 96: 97: * imach.c: Summary: Bug for young ages (<-30) will be in r17 98: 99: 2018-12-05 Brouard Nicolas <brouard@ined.fr> 100: 101: * Makefile: Summary: 0.99r16 102: 103: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 104: 105: * imach.c: Summary: Some bugs fixed 106: 107: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 108: 109: * imach.c: Summary: Bug for young ages (<-30) will be in r17 110: 111: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 112: 113: * imach.c: Summary: Some bugs fixed 114: 115: 2018-05-01 Brouard Nicolas <brouard@ined.fr> 116: 117: * imach.c: 118: Summary: Bug fixed by providing frequencies only for non missing covariates 119: 120: 2018-04-27 Brouard Nicolas <brouard@ined.fr> 121: 122: * imach.c: Summary: some minor bugs 123: 124: 2018-04-21 Brouard Nicolas <brouard@ined.fr> 125: 126: * README.txt: *** empty log message *** 127: 128: * imach.c: Summary: Some bugs fixed, valgrind tested 129: 130: 2018-04-20 Brouard Nicolas <brouard@ined.fr> 131: 132: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16 133: 134: * imach.c: 135: Summary: Computing mean and stdeviation of fixed quantitative variables 136: 137: 2018-04-19 Brouard Nicolas <brouard@ined.fr> 138: 139: * imach.c: Summary: Some minor bugs fixed 140: 141: * version.h: *** empty log message *** 142: 143: 2018-02-27 Brouard Nicolas <brouard@ined.fr> 144: 145: * imach.c: *** empty log message *** 146: 147: * imach.c: Summary: Adding second argument for quitting 148: 149: 2018-02-21 Brouard Nicolas <brouard@ined.fr> 150: 151: * Makefile, README.txt, imach.c: Summary: 0.99r15 152: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c 153: 154: 2017-07-20 Brouard Nicolas <brouard@ined.fr> 155: 156: * imach.c: Summary: temporary working 157: 158: 2017-07-19 Brouard Nicolas <brouard@ined.fr> 159: 160: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?) 161: 162: 2017-07-17 Brouard Nicolas <brouard@ined.fr> 163: 164: * imach.c: Summary: BOM files can be read now 165: 166: 2017-06-30 Brouard Nicolas <brouard@ined.fr> 167: 168: * imach.c: Summary: Graphs improvements 169: 170: * imach.c: Summary: Saito's color 171: 172: 2017-06-29 Brouard Nicolas <brouard@ined.fr> 173: 174: * imach.c: Summary: Version 0.99r14 175: 176: 2017-06-27 Brouard Nicolas <brouard@ined.fr> 177: 178: * imach.c: Summary: More documentation on projections 179: 180: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow) 181: 182: * imach.c: Summary: Some bug with rint 183: 184: 2017-05-24 Brouard Nicolas <brouard@ined.fr> 185: 186: * imach.c: *** empty log message *** 187: 188: 2017-05-23 Brouard Nicolas <brouard@ined.fr> 189: 190: * imach.c: Summary: Code into subroutine, cleanings 191: 192: 2017-05-18 Brouard Nicolas <brouard@ined.fr> 193: 194: * imach.c: 195: Summary: backprojection and confidence intervals of backprevalence 196: 197: 2017-05-13 Brouard Nicolas <brouard@ined.fr> 198: 199: * imach.c: Summary: temporary save for backprojection 200: 201: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed) 202: 203: 2017-04-26 Brouard Nicolas <brouard@ined.fr> 204: 205: * imach.c: Summary: imach 0.99r13 Some bugs fixed 206: 207: * imach.c: Summary: Labels in graphs 208: 209: 2017-04-24 Brouard Nicolas <brouard@ined.fr> 210: 211: * imach.c: Summary: to save 212: 213: 2017-04-18 Brouard Nicolas <brouard@ined.fr> 214: 215: * imach.c: *** empty log message *** 216: 217: 2017-04-05 Brouard Nicolas <brouard@ined.fr> 218: 219: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1 220: 221: 2017-04-04 Brouard Nicolas <brouard@ined.fr> 222: 223: * imach.c: Summary: Gnuplot indexations fixed (humm) 224: 225: * imach.c: 226: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3 227: 228: 2017-04-03 Brouard Nicolas <brouard@ined.fr> 229: 230: * imach.c: Summary: Version 0.99r12 231: Some cleanings, conformed with updated documentation. 232: 233: 2017-03-30 Brouard Nicolas <brouard@ined.fr> 234: 235: * version.h: *** empty log message *** 236: 237: * version.h: Summary:0.99r11 238: 239: 2017-03-29 Brouard Nicolas <brouard@ined.fr> 240: 241: * imach.c: Summary: Temp 242: 243: 2017-03-27 Brouard Nicolas <brouard@ined.fr> 244: 245: * imach.c: Summary: Temporary 246: 247: 2017-03-08 Brouard Nicolas <brouard@ined.fr> 248: 249: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed 250: 251: * imach.c: Summary: Fixing data parameter line 252: 253: 2016-12-15 Brouard Nicolas <brouard@ined.fr> 254: 255: * imach.c: Summary: 0.99 in progress 256: 257: 2016-09-15 Brouard Nicolas <brouard@ined.fr> 258: 259: * imach.c: *** empty log message *** 260: 261: * imach.c: Summary: not working 262: 263: 2016-09-08 Brouard Nicolas <brouard@ined.fr> 264: 265: * imach.c: Summary: continue 266: 267: 2016-09-07 Brouard Nicolas <brouard@ined.fr> 268: 269: * imach.c: Summary: Starting values from frequencies 270: 271: * imach.c: *** empty log message *** 272: 273: 2016-09-02 Brouard Nicolas <brouard@ined.fr> 274: 275: * imach.c: *** empty log message *** 276: 277: 2016-08-30 Brouard Nicolas <brouard@ined.fr> 278: 279: * imach.c: Summary: Fixing a lots 280: 281: 2016-08-29 Brouard Nicolas <brouard@ined.fr> 282: 283: * imach.c: Summary: gnuplot problem in Back projection to fix 284: 285: * imach.c: Summary: Better 286: 287: 2016-08-26 Brouard Nicolas <brouard@ined.fr> 288: 289: * imach.c: 290: Summary: Improvement in Powell output in order to copy and paste 291: 292: * imach.c: Summary: Starting tests of 0.99 293: 294: * imach.c: Summary: to valgrind 295: 296: 2016-08-25 Brouard Nicolas <brouard@ined.fr> 297: 298: * imach.c: *** empty log message *** 299: 300: 2016-08-23 Brouard Nicolas <brouard@ined.fr> 301: 302: * imach.c: *** empty log message *** 303: 304: * imach.c: Summary: not working 305: 306: 2016-08-22 Brouard Nicolas <brouard@ined.fr> 307: 308: * imach.c: Summary: not working 309: 310: * imach.c: Summary: Not working 311: 312: 2016-07-23 Brouard Nicolas <brouard@ined.fr> 313: 314: * imach.c: Summary: Completing for func too 315: 316: 2016-07-22 Brouard Nicolas <brouard@ined.fr> 317: 318: * imach.c: Summary: Fixing some arrays, still debugging 319: 320: 2016-07-21 Brouard Nicolas <brouard@ined.fr> 321: 322: * imach.c: 323: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods 324: 325: 2016-07-12 Brouard Nicolas <brouard@ined.fr> 326: 327: * imach.c: Summary: temp 328: 329: * imach.c: Summary: saving but not running 330: 331: 2016-07-01 Brouard Nicolas <brouard@ined.fr> 332: 333: * imach.c: Summary: Fixes 334: 335: 2016-02-19 Brouard Nicolas <brouard@ined.fr> 336: 337: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7 338: 339: * setup.iss, Makefile, version.h: *** empty log message *** 340: 341: * imach.c: Summary: temporary 342: 343: 2016-02-17 Brouard Nicolas <brouard@ined.fr> 344: 345: * imach.c: Summary: Probably last 0.98 stable version 0.98r6 346: 347: 2016-02-16 Brouard Nicolas <brouard@ined.fr> 348: 349: * imach.c: Summary: minor bug 350: 351: * imach.c: Summary: 0.99r2 352: 353: 2016-02-15 Brouard Nicolas <brouard@ined.fr> 354: 355: * imach.c: *** empty log message *** 356: 357: 2016-02-12 Brouard Nicolas <brouard@ined.fr> 358: 359: * imach.c: Summary: 0.99 Back projections 360: 361: 2015-12-23 Brouard Nicolas <brouard@ined.fr> 362: 363: * imach.c: Summary: Experimental backcast 364: 365: 2015-12-18 Brouard Nicolas <brouard@ined.fr> 366: 367: * imach.c: Summary: 0.98r4 Warning and status=-2 368: 369: Version 0.98r4 is now: 370: - displaying an error when status is -1, date of interview unknown and date of death known; 371: - permitting a status -2 when the vital status is unknown at a known date of right truncation. 372: Older changes concerning s=-2, dating from 2005 have been supersed. 373: 374: * Makefile: *** empty log message *** 375: 376: 2015-12-16 Brouard Nicolas <brouard@ined.fr> 377: 378: * Makefile: *** empty log message *** 379: 380: * imach.c: Summary: 0.98r4 working 381: 382: * Makefile: Summary: linuxrpm added 383: 384: * Makefile: *** empty log message *** 385: 386: * imach.c: Summary: temporary not working 387: 388: 2015-12-11 Brouard Nicolas <brouard@ined.fr> 389: 390: * imach.c: Summary: 0.98r4 391: 392: 2015-12-08 Brouard Nicolas <brouard@ined.fr> 393: 394: * Makefile: *** empty log message *** 395: 396: 2015-11-21 Brouard Nicolas <brouard@ined.fr> 397: 398: * Makefile: 399: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more 400: 401: * imach.c: Summary: minor typo 402: 403: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional 404: 405: Author: Nicolas Brouard 406: 407: 2015-11-18 Brouard Nicolas <brouard@ined.fr> 408: 409: * imach.c: Summary: Start working on projected prevalences 410: 411: 2015-11-17 Brouard Nicolas <brouard@ined.fr> 412: 413: * imach.c: Summary: Adding ftolpl parameter 414: Author: N Brouard 415: 416: We had difficulties to get smoothed confidence intervals. It was due 417: to the period prevalence which wasn't computed accurately. The inner 418: parameter ftolpl is now an outer parameter of the .imach parameter 419: file after estepm. If ftolpl is small 1.e-4 and estepm too, 420: computation are long. 421: 422: * version.h: *** empty log message *** 423: 424: * imach.c: Summary: temporary 425: 426: 2015-10-27 Brouard Nicolas <brouard@ined.fr> 427: 428: * Makefile: *** empty log message *** 429: 430: * setup.iss.in: Summary: some new subdirs 431: 432: * imach.c: *** empty log message *** 433: 434: * setup.iss.in: 435: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts 436: 437: 2015-10-24 Brouard Nicolas <brouard@ined.fr> 438: 439: * imach.c: *** empty log message *** 440: 441: 2015-10-23 Brouard Nicolas <brouard@ined.fr> 442: 443: * imach.c: 444: Summary: 0.98r3 some clarification for graphs on likelihood contributions 445: 446: 2015-10-01 Brouard Nicolas <brouard@ined.fr> 447: 448: * imach.c: Summary: Some new graphs of contribution to likelihood 449: 450: 2015-09-30 Brouard Nicolas <brouard@ined.fr> 451: 452: * Makefile: 453: Summary: Version read from version.h, itself read with cmake 454: 455: * imach.c: Summary: looking at better estimation of the hessian 456: 457: Also a better criteria for convergence to the period prevalence And 458: therefore adding the number of years needed to converge. (The 459: prevalence in any alive state shold sum to one 460: 461: * Makefile: *** empty log message *** 462: 463: 2015-09-22 Brouard Nicolas <brouard@ined.fr> 464: 465: * imach.c: 466: Summary: Adding some overall graph on contribution to likelihood. Might change 467: 468: 2015-09-15 Brouard Nicolas <brouard@ined.fr> 469: 470: * Makefile: *** empty log message *** 471: 472: * imach.c: Summary: 0.98r0 473: 474: - Some new graphs like survival functions 475: - Some bugs fixed like model=1+age+V2. 476: 477: * ChangeLog, Makefile: Summary: 0.98r0 478: 479: * CMakeLists.txt: Summary: Some tests for setup.iss 480: 481: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr> 482: 483: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc 484: 485: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local> 486: 487: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line. 488: 489: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr> 490: 491: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih) 492: 493: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local> 494: 495: * imach.c (Module): Merging 1.61 to 1.162 496: 497: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr> 498: 499: * prevlim.h (Module): 500: 501: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local> 502: 503: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... 504: (Module): Version 0.98nR Running ok, but output format still only works for three covariates. 505: 506: 2010-04-29 brouard <brouard@ined.fr> 507: 508: * imach.c (Module): Checking covariates for more complex models 509: than V1+V2. A lot of change to be done. Unstable. 510: 511: 2010-04-26 brouard <brouard@ined.fr> 512: 513: * imach.c (Module): merging some libgsl code. Fixing computation 514: of likelione (using inter/intrapolation if mle = 0) in order to 515: get same likelihood as if mle=1. 516: Some cleaning of code and comments added. 517: 518: 2009-10-29 brouard <brouard@ined.fr> 519: 520: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code. 521: 522: 2006-06-30 Brouard Nicolas <brouard@localhost> 523: 524: * imach.c (Module): Clarifications on computing e.j 525: 526: 2006-04-28 Brouard Nicolas <brouard@localhost> 527: 528: * imach.c (Module): Yes the sum of survivors was wrong since 529: imach-114 because nhstepm was no more computed in the age 530: loop. Now we define nhstepma in the age loop. 531: (Module): In order to speed up (in case of numerous covariates) we 532: compute health expectancies (without variances) in a first step 533: and then all the health expectancies with variances or standard 534: deviation (needs data from the Hessian matrices) which slows the 535: computation. 536: In the future we should be able to stop the program is only health 537: expectancies and graph are needed without standard deviations. 538: 539: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr> 540: 541: * imach.iss (Module): 542: 543: * imach.c (Module): bugs in evsi + population file added in htm output file 544: 545: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr> 546: 547: * imach.c (Module): 548: 549: 2006-03-20 Brouard Nicolas <brouard@localhost> 550: 551: * imach.c (Module): <title> changed, corresponds to .htm file 552: name. <head> headers where missing. 553: 554: * Makefile (Module): 0.98g 555: 556: * imach.c (Module): Weights can have a decimal point as for 557: English (a comma might work with a correct LC_NUMERIC environment, 558: otherwise the weight is truncated). 559: Modification of warning when the covariates values are not 0 or 560: 1. 561: Version 0.98g 562: 563: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr> 564: 565: * imach.c (Module): Comments concerning covariates added 566: 567: * noreg-setup.iss (Module): Version 0.98f 568: 569: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup 570: 571: * imach.c (Module): refinements in the computation of lli if 572: status=-2 in order to have more reliable computation if stepm is 573: not 1 month. Version 0.98f 574: 575: 2006-03-15 Brouard Nicolas <brouard@localhost> 576: 577: * imach.c (Module): Bug if status = -2, the loglikelihood was 578: computed as likelihood omitting the logarithm. Version O.98e 579: 580: 2006-03-14 Brouard Nicolas <brouard@localhost> 581: 582: * imach.c (Module): varevsij Comments added explaining the second 583: table of variances if popbased=1 . 584: (Module): Covariances of eij, ekl added, graphs fixed, new html link. 585: (Module): Function pstamp added 586: (Module): Version 0.98d 587: 588: 2006-03-06 Brouard Nicolas <brouard@localhost> 589: 590: * imach.c (Module): Variance-covariance wrong links and 591: varian-covariance of ej. is needed (Saito). 592: 593: 2006-02-27 Brouard Nicolas <brouard@localhost> 594: 595: * imach.c (Module): One freematrix added in mlikeli! 596: 597: 2006-02-26 Brouard Nicolas <brouard@localhost> 598: 599: * imach.c (Module): Some improvements in processing parameter 600: filename with strsep. 601: 602: 2006-02-24 Brouard Nicolas <brouard@localhost> 603: 604: * imach.c (Module): Memory leaks checks with valgrind and: 605: datafile was not closed, some imatrix were not freed and on matrix 606: allocation too. 607: 608: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr> 609: 610: * strsep.c (Module): Inclusion because not in mingw32!!! 611: 612: * setup.iss.in (Module): IMACHSETUPVERSION added 613: 614: * noreg-setup.iss (Module): added to cvs tree 615: 616: * Makefile (Module): IMACHSETUPVERSION added 617: 618: 2006-01-30 BROUARD Nicolas <brouard@localhost> 619: 620: * Makefile (Module, Module): Latest Makefile 621: 622: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe 623: 624: 2006-01-27 BROUARD Nicolas <brouard@localhost> 625: 626: * noreg-setup.iss (Module): ADDED 627: 628: 2006-01-24 BROUARD Nicolas <brouard@localhost> 629: 630: * imach.c (Module): Comments (lines starting with a #) are allowed in data. 631: 632: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr> 633: 634: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg 635: 636: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X 637: 638: 2005-09-30 <lievre@PC_00595> 639: 640: * imach.c (Module): sump fixed, loop imx fixed, and simplifications. 641: (Module): If the status is missing at the last wave but we know 642: that the person is alive, then we can code his/her status as -2 643: (instead of missing=-1 in earlier versions) and his/her 644: contributions to the likelihood is 1 - Prob of dying from last 645: health status (= 1-p13= p11+p12 in the easiest case of somebody in 646: the healthy state at last known wave). Version is 0.98 647: 648: 2004-05-20 Brouard Nicolas <brouard@localhost> 649: 650: * imach.c (Repository): 651: Agnes added a direct estimation of mortality (without the need of 652: computing period prevalence and differential mortality). Thus here 653: is version 0.97a which has been distributed to some people at 654: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of 655: mortality using covariates is not done today. Estimating direct 656: mortality is a very different process because it doesn't need 657: interpolation because it is easy to get the lx from the force of 658: the mortality mux in the simplest case as for a Gompertz (log mux 659: = a + b*x . But we have been able to incorporate the new code 660: within former imach program (0.96d) without deteriorating too much 661: the understanding of the program. 662: 663: 2003-06-25 <brouard@BROUARD> 664: 665: * imach.c (Module): On windows (cygwin) function asctime_r doesn't 666: exist so I changed back to asctime which exists. 667: (Module): Version 0.96b 668: 669: 2003-06-24 <brouard@BROUARD> 670: 671: * imach.c (Module): Some bugs corrected for windows. Also, when 672: mle=-1 a template is output in file "or"mypar.txt with the design 673: of the covariance matrix to be input. 674: 675: 2003-06-25 Brouard Nicolas <brouard@homebrou> 676: 677: * imach.c (Repository): Duplicated warning errors corrected. 678: (Repository): Elapsed time after each iteration is now output. It 679: helps to forecast when convergence will be reached. Elapsed time 680: is stamped in powell. We created a new html file for the graphs 681: concerning matrix of covariance. It has extension -cov.htm. 682: 683: 2003-06-23 Brouard Nicolas <brouard@homebrou> 684: 685: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things. 686: 687: 2003-06-18 Brouard Nicolas <brouard@homebrou> 688: 689: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96 690: 691: 2003-06-17 Brouard Nicolas <brouard@homebrou> 692: 693: 694: * imach.c (Repository): Check when date of death was earlier that 695: current date of interview. It may happen when the death was just 696: prior to the death. In this case, dh was negative and likelihood 697: was wrong (infinity). We still send an "Error" but patch by 698: assuming that the date of death was just one stepm after the 699: interview. 700: (Repository): Because some people have very long ID (first column) 701: we changed int to long in num[] and we added a new lvector for 702: memory allocation. But we also truncated to 8 characters (left 703: truncation) 704: 705: (Repository): No more line truncation errors. 706: 707: 2003-06-14 Brouard Nicolas <brouard@homebrou> 708: 709: * imach.c (Repository): Add of a routine likelione (likelihood 710: only once) which prints on a text file 711: (ilk) the contributions to the likelihood for each 712: individual/wave. 713: 714: 2003-06-13 Brouard Nicolas <brouard@homebrou> 715: * imach.c (Repository): Replace "freqsummary" at a correct 716: place. It differs from routine "prevalence" which may be called 717: many times. Probs is memory consuming and must be used with 718: parcimony. 719: 720: 2003-06-17 <brouard@BROUARD> 721: 722: * timeval.h (Module): Added included file to make use of 723: gettimeofday working on win32 with cygwin. 724: 725: 2003-05-16 Brouard Nicolas <brouard@brouard> 726: * imach.c (Module): Insert of a warning if the delay between two 727: waves is negative. 728: 729: * imach.c (Module): 730: 731: 2003-05-03 <brouard@BROUARD> 732: 733: * imach.c: Some cleaning 734: 735: 2003-03-28 <brouard@BROUARD> 736: * imach.c (Module): In version up to 0.92 likelihood was computed 737: as if date of death was unknown. Death was treated as any other 738: health state: the date of the interview describes the actual state 739: and not the date of a change in health state. The former idea was 740: to consider that at each interview the state was recorded 741: (healthy, disable or death) and IMaCh was corrected; but when we 742: introduced the exact date of death then we should have modified 743: the contribution of an exact death to the likelihood. This new 744: contribution is smaller and very dependent of the step unit 745: stepm. It is no more the probability to die between last interview 746: and month of death but the probability to survive from last 747: interview up to one month before death multiplied by the 748: probability to die within a month. Thanks to Chris 749: Jackson for correcting this bug. Former versions increased 750: mortality artificially. The bad side is that we add another loop 751: which slows down the processing. The difference can be up to 10% 752: lower mortality. 753: 754: 2002-05-30 <brouard@BROUARD> 755: * 756: * imach.c (Module): Add correlation matrix of one-step 757: probabilities and covariance matrix 758: 759: 760: 761: 762: