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Summary: r29

1: 2022-07-23 Nicolas Brouard <brouard@ined.fr> 2: 3: * r29 W and not sqrt(Wald) 4: 5: 2022-07-22 Nicolas Brouard <brouard@ined.fr> 6: 7: * imach.c (Module): Output of Wald test in the htm file and not only in the log. 8: 9: 2022-05-30 Brouard Nicolas <brouard@brouard.name> 10: 11: * imach.c: With products of covariates (age or dummies or 12: quantitatives), estimates of parameters were good but when 13: estimating variances the positions of newly created covariates 14: were wrongly assigned and results were wrong. Thank to Feinua_Sun! 15: 16: 2022-05-24 Nicolas Brouard <brouard@ined.fr> 17: 18: * imach.c (Module): Some attempts to find a bug of wrong estimates 19: of confidencce intervals with product in the equation modelC 20: 21: 2022-05-15 Nicolas Brouard <brouard@ined.fr> 22: 23: * imach.c (Module): Some minor improvements 24: 25: 2022-04-13 Brouard Nicolas <brouard@brouard.name> 26: 27: * imach.c (Module): Adding link to text data files 28: 29: 2022-04-11 Nicolas Brouard <brouard@ined.fr> 30: 31: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed 32: 33: 2022-04-05 Brouard Nicolas <brouard@ined.fr> 34: 35: * imach.c (Module): Fixed covariates (dummy or quantitative) 36: with missing values have never been allowed but are ERRORS and 37: program quits. Standard deviations of fixed covariates were 38: wrongly computed. Mean and standard deviations of time varying 39: covariates are still not computed. 40: 41: 2022-03-17 Brouard Nicolas <brouard@ined.fr> 42: 43: * 99r25 Improvements in fixing discrepancies between covariates 44: missing in result line but in model. 45: 46: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr> 47: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett 48: 49: *2021-03-08 Nicolas Brouard <brouard@ined.fr> 50: 51: * ./ (Module): Fixed bug on result: 52: 53: *2021-02-20 Nicolas Brouard <brouard@ined.fr> 54: 55: * imach.c (Module): Fix bug on quitting after result lines! 56: (Module): Version 0.99r21 57: 58: 2021-02-12 Nicolas Brouard <brouard@ined.fr> 59: 60: * imach.c (Module): The use of a Windows BOM (huge) file is now an error 61: 62: 63: 2021-02-11 Nicolas Brouard <brouard@ined.fr> 64: 65: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed. 66: 67: 2020-02-22 Brouard Nicolas <brouard@ined.fr> 68: 69: * (Module): imach.c Update mle=-3 (for computing Life expectancy 70: and life table from the data without any state) 71: 72: 2019-05-20 Brouard Nicolas <brouard@ined.fr> 73: 74: * version.h: Summary: version 0.99.r19 75: 76: * imach.c: Summary: Projection syntax simplified 77: We can now start projections, forward or backward, from the mean date 78: of inteviews up to or down to a number of years of projection: 79: prevforecast=1 yearsfproj=15.3 mobil_average=0 80: or 81: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0 82: or 83: prevbackcast=1 yearsbproj=12.3 mobil_average=1 84: or 85: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1 86: 87: 2019-05-18 Brouard Nicolas <brouard@ined.fr> 88: 89: * imach.c: Summary: doxygen tex bug 90: 91: 2019-05-16 Brouard Nicolas <brouard@ined.fr> 92: 93: * imach.c: Summary: There was some wrong lines added 94: 95: 2019-05-09 Brouard Nicolas <brouard@ined.fr> 96: 97: * Makefile, imach.c: *** empty log message *** 98: 99: * ChangeLog: Summary: C= 100: 101: * imach.c: Summary: Some updates 102: 103: * imach.c: Summary: Before ncovmax 104: 105: * version.h: *** empty log message *** 106: 107: * imach.c: Summary: 0.99r18 unlimited number of individuals 108: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur. 109: 110: 2018-12-13 Brouard Nicolas <brouard@ined.fr> 111: 112: * imach.c: Summary: Bug for young ages (<-30) will be in r17 113: 114: 2018-12-05 Brouard Nicolas <brouard@ined.fr> 115: 116: * Makefile: Summary: 0.99r16 117: 118: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 119: 120: * imach.c: Summary: Some bugs fixed 121: 122: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 123: 124: * imach.c: Summary: Bug for young ages (<-30) will be in r17 125: 126: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 127: 128: * imach.c: Summary: Some bugs fixed 129: 130: 2018-05-01 Brouard Nicolas <brouard@ined.fr> 131: 132: * imach.c: 133: Summary: Bug fixed by providing frequencies only for non missing covariates 134: 135: 2018-04-27 Brouard Nicolas <brouard@ined.fr> 136: 137: * imach.c: Summary: some minor bugs 138: 139: 2018-04-21 Brouard Nicolas <brouard@ined.fr> 140: 141: * README.txt: *** empty log message *** 142: 143: * imach.c: Summary: Some bugs fixed, valgrind tested 144: 145: 2018-04-20 Brouard Nicolas <brouard@ined.fr> 146: 147: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16 148: 149: * imach.c: 150: Summary: Computing mean and stdeviation of fixed quantitative variables 151: 152: 2018-04-19 Brouard Nicolas <brouard@ined.fr> 153: 154: * imach.c: Summary: Some minor bugs fixed 155: 156: * version.h: *** empty log message *** 157: 158: 2018-02-27 Brouard Nicolas <brouard@ined.fr> 159: 160: * imach.c: *** empty log message *** 161: 162: * imach.c: Summary: Adding second argument for quitting 163: 164: 2018-02-21 Brouard Nicolas <brouard@ined.fr> 165: 166: * Makefile, README.txt, imach.c: Summary: 0.99r15 167: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c 168: 169: 2017-07-20 Brouard Nicolas <brouard@ined.fr> 170: 171: * imach.c: Summary: temporary working 172: 173: 2017-07-19 Brouard Nicolas <brouard@ined.fr> 174: 175: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?) 176: 177: 2017-07-17 Brouard Nicolas <brouard@ined.fr> 178: 179: * imach.c: Summary: BOM files can be read now 180: 181: 2017-06-30 Brouard Nicolas <brouard@ined.fr> 182: 183: * imach.c: Summary: Graphs improvements 184: 185: * imach.c: Summary: Saito's color 186: 187: 2017-06-29 Brouard Nicolas <brouard@ined.fr> 188: 189: * imach.c: Summary: Version 0.99r14 190: 191: 2017-06-27 Brouard Nicolas <brouard@ined.fr> 192: 193: * imach.c: Summary: More documentation on projections 194: 195: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow) 196: 197: * imach.c: Summary: Some bug with rint 198: 199: 2017-05-24 Brouard Nicolas <brouard@ined.fr> 200: 201: * imach.c: *** empty log message *** 202: 203: 2017-05-23 Brouard Nicolas <brouard@ined.fr> 204: 205: * imach.c: Summary: Code into subroutine, cleanings 206: 207: 2017-05-18 Brouard Nicolas <brouard@ined.fr> 208: 209: * imach.c: 210: Summary: backprojection and confidence intervals of backprevalence 211: 212: 2017-05-13 Brouard Nicolas <brouard@ined.fr> 213: 214: * imach.c: Summary: temporary save for backprojection 215: 216: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed) 217: 218: 2017-04-26 Brouard Nicolas <brouard@ined.fr> 219: 220: * imach.c: Summary: imach 0.99r13 Some bugs fixed 221: 222: * imach.c: Summary: Labels in graphs 223: 224: 2017-04-24 Brouard Nicolas <brouard@ined.fr> 225: 226: * imach.c: Summary: to save 227: 228: 2017-04-18 Brouard Nicolas <brouard@ined.fr> 229: 230: * imach.c: *** empty log message *** 231: 232: 2017-04-05 Brouard Nicolas <brouard@ined.fr> 233: 234: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1 235: 236: 2017-04-04 Brouard Nicolas <brouard@ined.fr> 237: 238: * imach.c: Summary: Gnuplot indexations fixed (humm) 239: 240: * imach.c: 241: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3 242: 243: 2017-04-03 Brouard Nicolas <brouard@ined.fr> 244: 245: * imach.c: Summary: Version 0.99r12 246: Some cleanings, conformed with updated documentation. 247: 248: 2017-03-30 Brouard Nicolas <brouard@ined.fr> 249: 250: * version.h: *** empty log message *** 251: 252: * version.h: Summary:0.99r11 253: 254: 2017-03-29 Brouard Nicolas <brouard@ined.fr> 255: 256: * imach.c: Summary: Temp 257: 258: 2017-03-27 Brouard Nicolas <brouard@ined.fr> 259: 260: * imach.c: Summary: Temporary 261: 262: 2017-03-08 Brouard Nicolas <brouard@ined.fr> 263: 264: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed 265: 266: * imach.c: Summary: Fixing data parameter line 267: 268: 2016-12-15 Brouard Nicolas <brouard@ined.fr> 269: 270: * imach.c: Summary: 0.99 in progress 271: 272: 2016-09-15 Brouard Nicolas <brouard@ined.fr> 273: 274: * imach.c: *** empty log message *** 275: 276: * imach.c: Summary: not working 277: 278: 2016-09-08 Brouard Nicolas <brouard@ined.fr> 279: 280: * imach.c: Summary: continue 281: 282: 2016-09-07 Brouard Nicolas <brouard@ined.fr> 283: 284: * imach.c: Summary: Starting values from frequencies 285: 286: * imach.c: *** empty log message *** 287: 288: 2016-09-02 Brouard Nicolas <brouard@ined.fr> 289: 290: * imach.c: *** empty log message *** 291: 292: 2016-08-30 Brouard Nicolas <brouard@ined.fr> 293: 294: * imach.c: Summary: Fixing a lots 295: 296: 2016-08-29 Brouard Nicolas <brouard@ined.fr> 297: 298: * imach.c: Summary: gnuplot problem in Back projection to fix 299: 300: * imach.c: Summary: Better 301: 302: 2016-08-26 Brouard Nicolas <brouard@ined.fr> 303: 304: * imach.c: 305: Summary: Improvement in Powell output in order to copy and paste 306: 307: * imach.c: Summary: Starting tests of 0.99 308: 309: * imach.c: Summary: to valgrind 310: 311: 2016-08-25 Brouard Nicolas <brouard@ined.fr> 312: 313: * imach.c: *** empty log message *** 314: 315: 2016-08-23 Brouard Nicolas <brouard@ined.fr> 316: 317: * imach.c: *** empty log message *** 318: 319: * imach.c: Summary: not working 320: 321: 2016-08-22 Brouard Nicolas <brouard@ined.fr> 322: 323: * imach.c: Summary: not working 324: 325: * imach.c: Summary: Not working 326: 327: 2016-07-23 Brouard Nicolas <brouard@ined.fr> 328: 329: * imach.c: Summary: Completing for func too 330: 331: 2016-07-22 Brouard Nicolas <brouard@ined.fr> 332: 333: * imach.c: Summary: Fixing some arrays, still debugging 334: 335: 2016-07-21 Brouard Nicolas <brouard@ined.fr> 336: 337: * imach.c: 338: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods 339: 340: 2016-07-12 Brouard Nicolas <brouard@ined.fr> 341: 342: * imach.c: Summary: temp 343: 344: * imach.c: Summary: saving but not running 345: 346: 2016-07-01 Brouard Nicolas <brouard@ined.fr> 347: 348: * imach.c: Summary: Fixes 349: 350: 2016-02-19 Brouard Nicolas <brouard@ined.fr> 351: 352: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7 353: 354: * setup.iss, Makefile, version.h: *** empty log message *** 355: 356: * imach.c: Summary: temporary 357: 358: 2016-02-17 Brouard Nicolas <brouard@ined.fr> 359: 360: * imach.c: Summary: Probably last 0.98 stable version 0.98r6 361: 362: 2016-02-16 Brouard Nicolas <brouard@ined.fr> 363: 364: * imach.c: Summary: minor bug 365: 366: * imach.c: Summary: 0.99r2 367: 368: 2016-02-15 Brouard Nicolas <brouard@ined.fr> 369: 370: * imach.c: *** empty log message *** 371: 372: 2016-02-12 Brouard Nicolas <brouard@ined.fr> 373: 374: * imach.c: Summary: 0.99 Back projections 375: 376: 2015-12-23 Brouard Nicolas <brouard@ined.fr> 377: 378: * imach.c: Summary: Experimental backcast 379: 380: 2015-12-18 Brouard Nicolas <brouard@ined.fr> 381: 382: * imach.c: Summary: 0.98r4 Warning and status=-2 383: 384: Version 0.98r4 is now: 385: - displaying an error when status is -1, date of interview unknown and date of death known; 386: - permitting a status -2 when the vital status is unknown at a known date of right truncation. 387: Older changes concerning s=-2, dating from 2005 have been supersed. 388: 389: * Makefile: *** empty log message *** 390: 391: 2015-12-16 Brouard Nicolas <brouard@ined.fr> 392: 393: * Makefile: *** empty log message *** 394: 395: * imach.c: Summary: 0.98r4 working 396: 397: * Makefile: Summary: linuxrpm added 398: 399: * Makefile: *** empty log message *** 400: 401: * imach.c: Summary: temporary not working 402: 403: 2015-12-11 Brouard Nicolas <brouard@ined.fr> 404: 405: * imach.c: Summary: 0.98r4 406: 407: 2015-12-08 Brouard Nicolas <brouard@ined.fr> 408: 409: * Makefile: *** empty log message *** 410: 411: 2015-11-21 Brouard Nicolas <brouard@ined.fr> 412: 413: * Makefile: 414: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more 415: 416: * imach.c: Summary: minor typo 417: 418: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional 419: 420: Author: Nicolas Brouard 421: 422: 2015-11-18 Brouard Nicolas <brouard@ined.fr> 423: 424: * imach.c: Summary: Start working on projected prevalences 425: 426: 2015-11-17 Brouard Nicolas <brouard@ined.fr> 427: 428: * imach.c: Summary: Adding ftolpl parameter 429: Author: N Brouard 430: 431: We had difficulties to get smoothed confidence intervals. It was due 432: to the period prevalence which wasn't computed accurately. The inner 433: parameter ftolpl is now an outer parameter of the .imach parameter 434: file after estepm. If ftolpl is small 1.e-4 and estepm too, 435: computation are long. 436: 437: * version.h: *** empty log message *** 438: 439: * imach.c: Summary: temporary 440: 441: 2015-10-27 Brouard Nicolas <brouard@ined.fr> 442: 443: * Makefile: *** empty log message *** 444: 445: * setup.iss.in: Summary: some new subdirs 446: 447: * imach.c: *** empty log message *** 448: 449: * setup.iss.in: 450: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts 451: 452: 2015-10-24 Brouard Nicolas <brouard@ined.fr> 453: 454: * imach.c: *** empty log message *** 455: 456: 2015-10-23 Brouard Nicolas <brouard@ined.fr> 457: 458: * imach.c: 459: Summary: 0.98r3 some clarification for graphs on likelihood contributions 460: 461: 2015-10-01 Brouard Nicolas <brouard@ined.fr> 462: 463: * imach.c: Summary: Some new graphs of contribution to likelihood 464: 465: 2015-09-30 Brouard Nicolas <brouard@ined.fr> 466: 467: * Makefile: 468: Summary: Version read from version.h, itself read with cmake 469: 470: * imach.c: Summary: looking at better estimation of the hessian 471: 472: Also a better criteria for convergence to the period prevalence And 473: therefore adding the number of years needed to converge. (The 474: prevalence in any alive state shold sum to one 475: 476: * Makefile: *** empty log message *** 477: 478: 2015-09-22 Brouard Nicolas <brouard@ined.fr> 479: 480: * imach.c: 481: Summary: Adding some overall graph on contribution to likelihood. Might change 482: 483: 2015-09-15 Brouard Nicolas <brouard@ined.fr> 484: 485: * Makefile: *** empty log message *** 486: 487: * imach.c: Summary: 0.98r0 488: 489: - Some new graphs like survival functions 490: - Some bugs fixed like model=1+age+V2. 491: 492: * ChangeLog, Makefile: Summary: 0.98r0 493: 494: * CMakeLists.txt: Summary: Some tests for setup.iss 495: 496: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr> 497: 498: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc 499: 500: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local> 501: 502: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line. 503: 504: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr> 505: 506: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih) 507: 508: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local> 509: 510: * imach.c (Module): Merging 1.61 to 1.162 511: 512: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr> 513: 514: * prevlim.h (Module): 515: 516: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local> 517: 518: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... 519: (Module): Version 0.98nR Running ok, but output format still only works for three covariates. 520: 521: 2010-04-29 brouard <brouard@ined.fr> 522: 523: * imach.c (Module): Checking covariates for more complex models 524: than V1+V2. A lot of change to be done. Unstable. 525: 526: 2010-04-26 brouard <brouard@ined.fr> 527: 528: * imach.c (Module): merging some libgsl code. Fixing computation 529: of likelione (using inter/intrapolation if mle = 0) in order to 530: get same likelihood as if mle=1. 531: Some cleaning of code and comments added. 532: 533: 2009-10-29 brouard <brouard@ined.fr> 534: 535: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code. 536: 537: 2006-06-30 Brouard Nicolas <brouard@localhost> 538: 539: * imach.c (Module): Clarifications on computing e.j 540: 541: 2006-04-28 Brouard Nicolas <brouard@localhost> 542: 543: * imach.c (Module): Yes the sum of survivors was wrong since 544: imach-114 because nhstepm was no more computed in the age 545: loop. Now we define nhstepma in the age loop. 546: (Module): In order to speed up (in case of numerous covariates) we 547: compute health expectancies (without variances) in a first step 548: and then all the health expectancies with variances or standard 549: deviation (needs data from the Hessian matrices) which slows the 550: computation. 551: In the future we should be able to stop the program is only health 552: expectancies and graph are needed without standard deviations. 553: 554: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr> 555: 556: * imach.iss (Module): 557: 558: * imach.c (Module): bugs in evsi + population file added in htm output file 559: 560: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr> 561: 562: * imach.c (Module): 563: 564: 2006-03-20 Brouard Nicolas <brouard@localhost> 565: 566: * imach.c (Module): <title> changed, corresponds to .htm file 567: name. <head> headers where missing. 568: 569: * Makefile (Module): 0.98g 570: 571: * imach.c (Module): Weights can have a decimal point as for 572: English (a comma might work with a correct LC_NUMERIC environment, 573: otherwise the weight is truncated). 574: Modification of warning when the covariates values are not 0 or 575: 1. 576: Version 0.98g 577: 578: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr> 579: 580: * imach.c (Module): Comments concerning covariates added 581: 582: * noreg-setup.iss (Module): Version 0.98f 583: 584: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup 585: 586: * imach.c (Module): refinements in the computation of lli if 587: status=-2 in order to have more reliable computation if stepm is 588: not 1 month. Version 0.98f 589: 590: 2006-03-15 Brouard Nicolas <brouard@localhost> 591: 592: * imach.c (Module): Bug if status = -2, the loglikelihood was 593: computed as likelihood omitting the logarithm. Version O.98e 594: 595: 2006-03-14 Brouard Nicolas <brouard@localhost> 596: 597: * imach.c (Module): varevsij Comments added explaining the second 598: table of variances if popbased=1 . 599: (Module): Covariances of eij, ekl added, graphs fixed, new html link. 600: (Module): Function pstamp added 601: (Module): Version 0.98d 602: 603: 2006-03-06 Brouard Nicolas <brouard@localhost> 604: 605: * imach.c (Module): Variance-covariance wrong links and 606: varian-covariance of ej. is needed (Saito). 607: 608: 2006-02-27 Brouard Nicolas <brouard@localhost> 609: 610: * imach.c (Module): One freematrix added in mlikeli! 611: 612: 2006-02-26 Brouard Nicolas <brouard@localhost> 613: 614: * imach.c (Module): Some improvements in processing parameter 615: filename with strsep. 616: 617: 2006-02-24 Brouard Nicolas <brouard@localhost> 618: 619: * imach.c (Module): Memory leaks checks with valgrind and: 620: datafile was not closed, some imatrix were not freed and on matrix 621: allocation too. 622: 623: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr> 624: 625: * strsep.c (Module): Inclusion because not in mingw32!!! 626: 627: * setup.iss.in (Module): IMACHSETUPVERSION added 628: 629: * noreg-setup.iss (Module): added to cvs tree 630: 631: * Makefile (Module): IMACHSETUPVERSION added 632: 633: 2006-01-30 BROUARD Nicolas <brouard@localhost> 634: 635: * Makefile (Module, Module): Latest Makefile 636: 637: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe 638: 639: 2006-01-27 BROUARD Nicolas <brouard@localhost> 640: 641: * noreg-setup.iss (Module): ADDED 642: 643: 2006-01-24 BROUARD Nicolas <brouard@localhost> 644: 645: * imach.c (Module): Comments (lines starting with a #) are allowed in data. 646: 647: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr> 648: 649: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg 650: 651: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X 652: 653: 2005-09-30 <lievre@PC_00595> 654: 655: * imach.c (Module): sump fixed, loop imx fixed, and simplifications. 656: (Module): If the status is missing at the last wave but we know 657: that the person is alive, then we can code his/her status as -2 658: (instead of missing=-1 in earlier versions) and his/her 659: contributions to the likelihood is 1 - Prob of dying from last 660: health status (= 1-p13= p11+p12 in the easiest case of somebody in 661: the healthy state at last known wave). Version is 0.98 662: 663: 2004-05-20 Brouard Nicolas <brouard@localhost> 664: 665: * imach.c (Repository): 666: Agnes added a direct estimation of mortality (without the need of 667: computing period prevalence and differential mortality). Thus here 668: is version 0.97a which has been distributed to some people at 669: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of 670: mortality using covariates is not done today. Estimating direct 671: mortality is a very different process because it doesn't need 672: interpolation because it is easy to get the lx from the force of 673: the mortality mux in the simplest case as for a Gompertz (log mux 674: = a + b*x . But we have been able to incorporate the new code 675: within former imach program (0.96d) without deteriorating too much 676: the understanding of the program. 677: 678: 2003-06-25 <brouard@BROUARD> 679: 680: * imach.c (Module): On windows (cygwin) function asctime_r doesn't 681: exist so I changed back to asctime which exists. 682: (Module): Version 0.96b 683: 684: 2003-06-24 <brouard@BROUARD> 685: 686: * imach.c (Module): Some bugs corrected for windows. Also, when 687: mle=-1 a template is output in file "or"mypar.txt with the design 688: of the covariance matrix to be input. 689: 690: 2003-06-25 Brouard Nicolas <brouard@homebrou> 691: 692: * imach.c (Repository): Duplicated warning errors corrected. 693: (Repository): Elapsed time after each iteration is now output. It 694: helps to forecast when convergence will be reached. Elapsed time 695: is stamped in powell. We created a new html file for the graphs 696: concerning matrix of covariance. It has extension -cov.htm. 697: 698: 2003-06-23 Brouard Nicolas <brouard@homebrou> 699: 700: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things. 701: 702: 2003-06-18 Brouard Nicolas <brouard@homebrou> 703: 704: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96 705: 706: 2003-06-17 Brouard Nicolas <brouard@homebrou> 707: 708: 709: * imach.c (Repository): Check when date of death was earlier that 710: current date of interview. It may happen when the death was just 711: prior to the death. In this case, dh was negative and likelihood 712: was wrong (infinity). We still send an "Error" but patch by 713: assuming that the date of death was just one stepm after the 714: interview. 715: (Repository): Because some people have very long ID (first column) 716: we changed int to long in num[] and we added a new lvector for 717: memory allocation. But we also truncated to 8 characters (left 718: truncation) 719: 720: (Repository): No more line truncation errors. 721: 722: 2003-06-14 Brouard Nicolas <brouard@homebrou> 723: 724: * imach.c (Repository): Add of a routine likelione (likelihood 725: only once) which prints on a text file 726: (ilk) the contributions to the likelihood for each 727: individual/wave. 728: 729: 2003-06-13 Brouard Nicolas <brouard@homebrou> 730: * imach.c (Repository): Replace "freqsummary" at a correct 731: place. It differs from routine "prevalence" which may be called 732: many times. Probs is memory consuming and must be used with 733: parcimony. 734: 735: 2003-06-17 <brouard@BROUARD> 736: 737: * timeval.h (Module): Added included file to make use of 738: gettimeofday working on win32 with cygwin. 739: 740: 2003-05-16 Brouard Nicolas <brouard@brouard> 741: * imach.c (Module): Insert of a warning if the delay between two 742: waves is negative. 743: 744: * imach.c (Module): 745: 746: 2003-05-03 <brouard@BROUARD> 747: 748: * imach.c: Some cleaning 749: 750: 2003-03-28 <brouard@BROUARD> 751: * imach.c (Module): In version up to 0.92 likelihood was computed 752: as if date of death was unknown. Death was treated as any other 753: health state: the date of the interview describes the actual state 754: and not the date of a change in health state. The former idea was 755: to consider that at each interview the state was recorded 756: (healthy, disable or death) and IMaCh was corrected; but when we 757: introduced the exact date of death then we should have modified 758: the contribution of an exact death to the likelihood. This new 759: contribution is smaller and very dependent of the step unit 760: stepm. It is no more the probability to die between last interview 761: and month of death but the probability to survive from last 762: interview up to one month before death multiplied by the 763: probability to die within a month. Thanks to Chris 764: Jackson for correcting this bug. Former versions increased 765: mortality artificially. The bad side is that we add another loop 766: which slows down the processing. The difference can be up to 10% 767: lower mortality. 768: 769: 2002-05-30 <brouard@BROUARD> 770: * 771: * imach.c (Module): Add correlation matrix of one-step 772: probabilities and covariance matrix 773: 774: 775: 776: 777: