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1: 2022-09-18 Nicolas Brouard <brouard@ined.fr> 2: 3: * imach.c (Module): Fixing when a state in the data is 0 or higher 4: than lstate+ndeath. Fixing the plot of contribution to Likelihood. 5: 6: 2022-09-14 Nicolas Brouard <brouard@ined.fr> 7: 8: * imach.c (Module): Version 0.99r39 with colored dummy covariates 9: (fixed or time varying), using new last columns of 10: ILK_parameter.txt file. 11: 12: 2022-09-11 Nicolas Brouard <brouard@ined.fr> 13: 14: * imach.c (Module): Adding timevarying products of any kinds, 15: should work before shifting cotvar from ncovcol+nqv columns in 16: order to have a correspondance between the column of cotvar and 17: the id of column. 18: (Module): Some cleaning and adding covariates in ILK.txt 19: 20: 2022-09-09 Nicolas Brouard <brouard@ined.fr> 21: 22: * imach.c (Module): Many improvements for fixing products of fixed 23: timevarying as well as fixed * fixed, and test with quantitative 24: covariate. 25: 26: 2022-09-04 Nicolas Brouard <brouard@ined.fr> 27: 28: * imach.c (Module): Now the easy runs i.e. without result or 29: model=1+age only did not work. The defautl combination should be 1 30: and not 0 because everything hasn't been tranformed yet. 31: 32: 2022-09-02 Nicolas Brouard <brouard@ined.fr> 33: 34: * imach.c: Version 0.99r35 because it outputs same results with 35: 1+age+V1+V1*age for females and 1+age for females only 36: (education=1 noweight) 37: 38: 2022-08-31 Nicolas Brouard <brouard@ined.fr> 39: 40: * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34 41: 42: 2022-08-21 Nicolas Brouard <brouard@ined.fr> 43: 44: * imach.c (Module): Version 0.99r33 A lot of changes in 45: reassigning covariates: my first idea was that people will always 46: use the first covariate V1 into the model but in fact they are 47: producing data with many covariates and can use an equation model 48: with some of the covariate; it means that in a model V2+V3 instead 49: of codtabm(k,Tvaraff[j]) which calculates for combination k, for 50: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact 51: the equation model is restricted to two variables only (V2, V3) 52: and the combination for V2 should be codtabm(k,1) instead of 53: (codtabm(k,2), and the code should be 54: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been 55: made. All of these should be simplified once a day like we did in 56: hpxij() for example by using precov[nres] which is computed in 57: decoderesult for each nres of each resultline. Loop should be done 58: on the equation model globally by distinguishing only product with 59: age (which are changing with age) and no more on type of 60: covariates, single dummies, single covariates. 61: 62: 2022-08-06 Nicolas Brouard <brouard@ined.fr> 63: 64: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function 65: 66: 2022-08-03 Nicolas Brouard <brouard@ined.fr> 67: 68: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates. 69: 70: 2022-07-25 Brouard Nicolas <brouard@brouard.name> 71: 72: * imach.c (Module): Error cptcovn instead of nsd in bmij (was 73: coredumped, revealed by Feiuno, thank you. 74: 75: 2022-07-23 Nicolas Brouard <brouard@ined.fr> 76: 77: * r29 W and not sqrt(Wald) 78: 79: 2022-07-22 Nicolas Brouard <brouard@ined.fr> 80: 81: * imach.c (Module): Output of Wald test in the htm file and not only in the log. 82: 83: 2022-06-02 Brouard Nicolas <brouard@brouard.name> 84: 85: * imach.c (Module): Adding the Wald tests from the log to the main 86: htm for better display of the maximum likelihood estimators. 87: 88: 2022-05-30 Brouard Nicolas <brouard@brouard.name> 89: 90: * imach.c: With products of covariates (age or dummies or 91: quantitatives), estimates of parameters were good but when 92: estimating variances the positions of newly created covariates 93: were wrongly assigned and results were wrong. Thank to Feinua_Sun! 94: 95: 2022-05-24 Nicolas Brouard <brouard@ined.fr> 96: 97: * imach.c (Module): Some attempts to find a bug of wrong estimates 98: of confidencce intervals with product in the equation modelC 99: 100: 2022-05-15 Nicolas Brouard <brouard@ined.fr> 101: 102: * imach.c (Module): Some minor improvements 103: 104: 2022-04-13 Brouard Nicolas <brouard@brouard.name> 105: 106: * imach.c (Module): Adding link to text data files 107: 108: 2022-04-11 Nicolas Brouard <brouard@ined.fr> 109: 110: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed 111: 112: 2022-04-05 Brouard Nicolas <brouard@ined.fr> 113: 114: * imach.c (Module): Fixed covariates (dummy or quantitative) 115: with missing values have never been allowed but are ERRORS and 116: program quits. Standard deviations of fixed covariates were 117: wrongly computed. Mean and standard deviations of time varying 118: covariates are still not computed. 119: 120: 2022-03-17 Brouard Nicolas <brouard@ined.fr> 121: 122: * 99r25 Improvements in fixing discrepancies between covariates 123: missing in result line but in model. 124: 125: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr> 126: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett 127: 128: *2021-03-08 Nicolas Brouard <brouard@ined.fr> 129: 130: * ./ (Module): Fixed bug on result: 131: 132: *2021-02-20 Nicolas Brouard <brouard@ined.fr> 133: 134: * imach.c (Module): Fix bug on quitting after result lines! 135: (Module): Version 0.99r21 136: 137: 2021-02-12 Nicolas Brouard <brouard@ined.fr> 138: 139: * imach.c (Module): The use of a Windows BOM (huge) file is now an error 140: 141: 142: 2021-02-11 Nicolas Brouard <brouard@ined.fr> 143: 144: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed. 145: 146: 2020-02-22 Brouard Nicolas <brouard@ined.fr> 147: 148: * (Module): imach.c Update mle=-3 (for computing Life expectancy 149: and life table from the data without any state) 150: 151: 2019-05-20 Brouard Nicolas <brouard@ined.fr> 152: 153: * version.h: Summary: version 0.99.r19 154: 155: * imach.c: Summary: Projection syntax simplified 156: We can now start projections, forward or backward, from the mean date 157: of inteviews up to or down to a number of years of projection: 158: prevforecast=1 yearsfproj=15.3 mobil_average=0 159: or 160: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0 161: or 162: prevbackcast=1 yearsbproj=12.3 mobil_average=1 163: or 164: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1 165: 166: 2019-05-18 Brouard Nicolas <brouard@ined.fr> 167: 168: * imach.c: Summary: doxygen tex bug 169: 170: 2019-05-16 Brouard Nicolas <brouard@ined.fr> 171: 172: * imach.c: Summary: There was some wrong lines added 173: 174: 2019-05-09 Brouard Nicolas <brouard@ined.fr> 175: 176: * Makefile, imach.c: *** empty log message *** 177: 178: * ChangeLog: Summary: C= 179: 180: * imach.c: Summary: Some updates 181: 182: * imach.c: Summary: Before ncovmax 183: 184: * version.h: *** empty log message *** 185: 186: * imach.c: Summary: 0.99r18 unlimited number of individuals 187: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur. 188: 189: 2018-12-13 Brouard Nicolas <brouard@ined.fr> 190: 191: * imach.c: Summary: Bug for young ages (<-30) will be in r17 192: 193: 2018-12-05 Brouard Nicolas <brouard@ined.fr> 194: 195: * Makefile: Summary: 0.99r16 196: 197: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 198: 199: * imach.c: Summary: Some bugs fixed 200: 201: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 202: 203: * imach.c: Summary: Bug for young ages (<-30) will be in r17 204: 205: 2018-05-02 Brouard Nicolas <brouard@ined.fr> 206: 207: * imach.c: Summary: Some bugs fixed 208: 209: 2018-05-01 Brouard Nicolas <brouard@ined.fr> 210: 211: * imach.c: 212: Summary: Bug fixed by providing frequencies only for non missing covariates 213: 214: 2018-04-27 Brouard Nicolas <brouard@ined.fr> 215: 216: * imach.c: Summary: some minor bugs 217: 218: 2018-04-21 Brouard Nicolas <brouard@ined.fr> 219: 220: * README.txt: *** empty log message *** 221: 222: * imach.c: Summary: Some bugs fixed, valgrind tested 223: 224: 2018-04-20 Brouard Nicolas <brouard@ined.fr> 225: 226: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16 227: 228: * imach.c: 229: Summary: Computing mean and stdeviation of fixed quantitative variables 230: 231: 2018-04-19 Brouard Nicolas <brouard@ined.fr> 232: 233: * imach.c: Summary: Some minor bugs fixed 234: 235: * version.h: *** empty log message *** 236: 237: 2018-02-27 Brouard Nicolas <brouard@ined.fr> 238: 239: * imach.c: *** empty log message *** 240: 241: * imach.c: Summary: Adding second argument for quitting 242: 243: 2018-02-21 Brouard Nicolas <brouard@ined.fr> 244: 245: * Makefile, README.txt, imach.c: Summary: 0.99r15 246: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c 247: 248: 2017-07-20 Brouard Nicolas <brouard@ined.fr> 249: 250: * imach.c: Summary: temporary working 251: 252: 2017-07-19 Brouard Nicolas <brouard@ined.fr> 253: 254: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?) 255: 256: 2017-07-17 Brouard Nicolas <brouard@ined.fr> 257: 258: * imach.c: Summary: BOM files can be read now 259: 260: 2017-06-30 Brouard Nicolas <brouard@ined.fr> 261: 262: * imach.c: Summary: Graphs improvements 263: 264: * imach.c: Summary: Saito's color 265: 266: 2017-06-29 Brouard Nicolas <brouard@ined.fr> 267: 268: * imach.c: Summary: Version 0.99r14 269: 270: 2017-06-27 Brouard Nicolas <brouard@ined.fr> 271: 272: * imach.c: Summary: More documentation on projections 273: 274: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow) 275: 276: * imach.c: Summary: Some bug with rint 277: 278: 2017-05-24 Brouard Nicolas <brouard@ined.fr> 279: 280: * imach.c: *** empty log message *** 281: 282: 2017-05-23 Brouard Nicolas <brouard@ined.fr> 283: 284: * imach.c: Summary: Code into subroutine, cleanings 285: 286: 2017-05-18 Brouard Nicolas <brouard@ined.fr> 287: 288: * imach.c: 289: Summary: backprojection and confidence intervals of backprevalence 290: 291: 2017-05-13 Brouard Nicolas <brouard@ined.fr> 292: 293: * imach.c: Summary: temporary save for backprojection 294: 295: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed) 296: 297: 2017-04-26 Brouard Nicolas <brouard@ined.fr> 298: 299: * imach.c: Summary: imach 0.99r13 Some bugs fixed 300: 301: * imach.c: Summary: Labels in graphs 302: 303: 2017-04-24 Brouard Nicolas <brouard@ined.fr> 304: 305: * imach.c: Summary: to save 306: 307: 2017-04-18 Brouard Nicolas <brouard@ined.fr> 308: 309: * imach.c: *** empty log message *** 310: 311: 2017-04-05 Brouard Nicolas <brouard@ined.fr> 312: 313: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1 314: 315: 2017-04-04 Brouard Nicolas <brouard@ined.fr> 316: 317: * imach.c: Summary: Gnuplot indexations fixed (humm) 318: 319: * imach.c: 320: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3 321: 322: 2017-04-03 Brouard Nicolas <brouard@ined.fr> 323: 324: * imach.c: Summary: Version 0.99r12 325: Some cleanings, conformed with updated documentation. 326: 327: 2017-03-30 Brouard Nicolas <brouard@ined.fr> 328: 329: * version.h: *** empty log message *** 330: 331: * version.h: Summary:0.99r11 332: 333: 2017-03-29 Brouard Nicolas <brouard@ined.fr> 334: 335: * imach.c: Summary: Temp 336: 337: 2017-03-27 Brouard Nicolas <brouard@ined.fr> 338: 339: * imach.c: Summary: Temporary 340: 341: 2017-03-08 Brouard Nicolas <brouard@ined.fr> 342: 343: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed 344: 345: * imach.c: Summary: Fixing data parameter line 346: 347: 2016-12-15 Brouard Nicolas <brouard@ined.fr> 348: 349: * imach.c: Summary: 0.99 in progress 350: 351: 2016-09-15 Brouard Nicolas <brouard@ined.fr> 352: 353: * imach.c: *** empty log message *** 354: 355: * imach.c: Summary: not working 356: 357: 2016-09-08 Brouard Nicolas <brouard@ined.fr> 358: 359: * imach.c: Summary: continue 360: 361: 2016-09-07 Brouard Nicolas <brouard@ined.fr> 362: 363: * imach.c: Summary: Starting values from frequencies 364: 365: * imach.c: *** empty log message *** 366: 367: 2016-09-02 Brouard Nicolas <brouard@ined.fr> 368: 369: * imach.c: *** empty log message *** 370: 371: 2016-08-30 Brouard Nicolas <brouard@ined.fr> 372: 373: * imach.c: Summary: Fixing a lots 374: 375: 2016-08-29 Brouard Nicolas <brouard@ined.fr> 376: 377: * imach.c: Summary: gnuplot problem in Back projection to fix 378: 379: * imach.c: Summary: Better 380: 381: 2016-08-26 Brouard Nicolas <brouard@ined.fr> 382: 383: * imach.c: 384: Summary: Improvement in Powell output in order to copy and paste 385: 386: * imach.c: Summary: Starting tests of 0.99 387: 388: * imach.c: Summary: to valgrind 389: 390: 2016-08-25 Brouard Nicolas <brouard@ined.fr> 391: 392: * imach.c: *** empty log message *** 393: 394: 2016-08-23 Brouard Nicolas <brouard@ined.fr> 395: 396: * imach.c: *** empty log message *** 397: 398: * imach.c: Summary: not working 399: 400: 2016-08-22 Brouard Nicolas <brouard@ined.fr> 401: 402: * imach.c: Summary: not working 403: 404: * imach.c: Summary: Not working 405: 406: 2016-07-23 Brouard Nicolas <brouard@ined.fr> 407: 408: * imach.c: Summary: Completing for func too 409: 410: 2016-07-22 Brouard Nicolas <brouard@ined.fr> 411: 412: * imach.c: Summary: Fixing some arrays, still debugging 413: 414: 2016-07-21 Brouard Nicolas <brouard@ined.fr> 415: 416: * imach.c: 417: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods 418: 419: 2016-07-12 Brouard Nicolas <brouard@ined.fr> 420: 421: * imach.c: Summary: temp 422: 423: * imach.c: Summary: saving but not running 424: 425: 2016-07-01 Brouard Nicolas <brouard@ined.fr> 426: 427: * imach.c: Summary: Fixes 428: 429: 2016-02-19 Brouard Nicolas <brouard@ined.fr> 430: 431: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7 432: 433: * setup.iss, Makefile, version.h: *** empty log message *** 434: 435: * imach.c: Summary: temporary 436: 437: 2016-02-17 Brouard Nicolas <brouard@ined.fr> 438: 439: * imach.c: Summary: Probably last 0.98 stable version 0.98r6 440: 441: 2016-02-16 Brouard Nicolas <brouard@ined.fr> 442: 443: * imach.c: Summary: minor bug 444: 445: * imach.c: Summary: 0.99r2 446: 447: 2016-02-15 Brouard Nicolas <brouard@ined.fr> 448: 449: * imach.c: *** empty log message *** 450: 451: 2016-02-12 Brouard Nicolas <brouard@ined.fr> 452: 453: * imach.c: Summary: 0.99 Back projections 454: 455: 2015-12-23 Brouard Nicolas <brouard@ined.fr> 456: 457: * imach.c: Summary: Experimental backcast 458: 459: 2015-12-18 Brouard Nicolas <brouard@ined.fr> 460: 461: * imach.c: Summary: 0.98r4 Warning and status=-2 462: 463: Version 0.98r4 is now: 464: - displaying an error when status is -1, date of interview unknown and date of death known; 465: - permitting a status -2 when the vital status is unknown at a known date of right truncation. 466: Older changes concerning s=-2, dating from 2005 have been supersed. 467: 468: * Makefile: *** empty log message *** 469: 470: 2015-12-16 Brouard Nicolas <brouard@ined.fr> 471: 472: * Makefile: *** empty log message *** 473: 474: * imach.c: Summary: 0.98r4 working 475: 476: * Makefile: Summary: linuxrpm added 477: 478: * Makefile: *** empty log message *** 479: 480: * imach.c: Summary: temporary not working 481: 482: 2015-12-11 Brouard Nicolas <brouard@ined.fr> 483: 484: * imach.c: Summary: 0.98r4 485: 486: 2015-12-08 Brouard Nicolas <brouard@ined.fr> 487: 488: * Makefile: *** empty log message *** 489: 490: 2015-11-21 Brouard Nicolas <brouard@ined.fr> 491: 492: * Makefile: 493: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more 494: 495: * imach.c: Summary: minor typo 496: 497: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional 498: 499: Author: Nicolas Brouard 500: 501: 2015-11-18 Brouard Nicolas <brouard@ined.fr> 502: 503: * imach.c: Summary: Start working on projected prevalences 504: 505: 2015-11-17 Brouard Nicolas <brouard@ined.fr> 506: 507: * imach.c: Summary: Adding ftolpl parameter 508: Author: N Brouard 509: 510: We had difficulties to get smoothed confidence intervals. It was due 511: to the period prevalence which wasn't computed accurately. The inner 512: parameter ftolpl is now an outer parameter of the .imach parameter 513: file after estepm. If ftolpl is small 1.e-4 and estepm too, 514: computation are long. 515: 516: * version.h: *** empty log message *** 517: 518: * imach.c: Summary: temporary 519: 520: 2015-10-27 Brouard Nicolas <brouard@ined.fr> 521: 522: * Makefile: *** empty log message *** 523: 524: * setup.iss.in: Summary: some new subdirs 525: 526: * imach.c: *** empty log message *** 527: 528: * setup.iss.in: 529: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts 530: 531: 2015-10-24 Brouard Nicolas <brouard@ined.fr> 532: 533: * imach.c: *** empty log message *** 534: 535: 2015-10-23 Brouard Nicolas <brouard@ined.fr> 536: 537: * imach.c: 538: Summary: 0.98r3 some clarification for graphs on likelihood contributions 539: 540: 2015-10-01 Brouard Nicolas <brouard@ined.fr> 541: 542: * imach.c: Summary: Some new graphs of contribution to likelihood 543: 544: 2015-09-30 Brouard Nicolas <brouard@ined.fr> 545: 546: * Makefile: 547: Summary: Version read from version.h, itself read with cmake 548: 549: * imach.c: Summary: looking at better estimation of the hessian 550: 551: Also a better criteria for convergence to the period prevalence And 552: therefore adding the number of years needed to converge. (The 553: prevalence in any alive state shold sum to one 554: 555: * Makefile: *** empty log message *** 556: 557: 2015-09-22 Brouard Nicolas <brouard@ined.fr> 558: 559: * imach.c: 560: Summary: Adding some overall graph on contribution to likelihood. Might change 561: 562: 2015-09-15 Brouard Nicolas <brouard@ined.fr> 563: 564: * Makefile: *** empty log message *** 565: 566: * imach.c: Summary: 0.98r0 567: 568: - Some new graphs like survival functions 569: - Some bugs fixed like model=1+age+V2. 570: 571: * ChangeLog, Makefile: Summary: 0.98r0 572: 573: * CMakeLists.txt: Summary: Some tests for setup.iss 574: 575: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr> 576: 577: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc 578: 579: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local> 580: 581: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line. 582: 583: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr> 584: 585: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih) 586: 587: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local> 588: 589: * imach.c (Module): Merging 1.61 to 1.162 590: 591: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr> 592: 593: * prevlim.h (Module): 594: 595: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local> 596: 597: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... 598: (Module): Version 0.98nR Running ok, but output format still only works for three covariates. 599: 600: 2010-04-29 brouard <brouard@ined.fr> 601: 602: * imach.c (Module): Checking covariates for more complex models 603: than V1+V2. A lot of change to be done. Unstable. 604: 605: 2010-04-26 brouard <brouard@ined.fr> 606: 607: * imach.c (Module): merging some libgsl code. Fixing computation 608: of likelione (using inter/intrapolation if mle = 0) in order to 609: get same likelihood as if mle=1. 610: Some cleaning of code and comments added. 611: 612: 2009-10-29 brouard <brouard@ined.fr> 613: 614: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code. 615: 616: 2006-06-30 Brouard Nicolas <brouard@localhost> 617: 618: * imach.c (Module): Clarifications on computing e.j 619: 620: 2006-04-28 Brouard Nicolas <brouard@localhost> 621: 622: * imach.c (Module): Yes the sum of survivors was wrong since 623: imach-114 because nhstepm was no more computed in the age 624: loop. Now we define nhstepma in the age loop. 625: (Module): In order to speed up (in case of numerous covariates) we 626: compute health expectancies (without variances) in a first step 627: and then all the health expectancies with variances or standard 628: deviation (needs data from the Hessian matrices) which slows the 629: computation. 630: In the future we should be able to stop the program is only health 631: expectancies and graph are needed without standard deviations. 632: 633: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr> 634: 635: * imach.iss (Module): 636: 637: * imach.c (Module): bugs in evsi + population file added in htm output file 638: 639: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr> 640: 641: * imach.c (Module): 642: 643: 2006-03-20 Brouard Nicolas <brouard@localhost> 644: 645: * imach.c (Module): <title> changed, corresponds to .htm file 646: name. <head> headers where missing. 647: 648: * Makefile (Module): 0.98g 649: 650: * imach.c (Module): Weights can have a decimal point as for 651: English (a comma might work with a correct LC_NUMERIC environment, 652: otherwise the weight is truncated). 653: Modification of warning when the covariates values are not 0 or 654: 1. 655: Version 0.98g 656: 657: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr> 658: 659: * imach.c (Module): Comments concerning covariates added 660: 661: * noreg-setup.iss (Module): Version 0.98f 662: 663: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup 664: 665: * imach.c (Module): refinements in the computation of lli if 666: status=-2 in order to have more reliable computation if stepm is 667: not 1 month. Version 0.98f 668: 669: 2006-03-15 Brouard Nicolas <brouard@localhost> 670: 671: * imach.c (Module): Bug if status = -2, the loglikelihood was 672: computed as likelihood omitting the logarithm. Version O.98e 673: 674: 2006-03-14 Brouard Nicolas <brouard@localhost> 675: 676: * imach.c (Module): varevsij Comments added explaining the second 677: table of variances if popbased=1 . 678: (Module): Covariances of eij, ekl added, graphs fixed, new html link. 679: (Module): Function pstamp added 680: (Module): Version 0.98d 681: 682: 2006-03-06 Brouard Nicolas <brouard@localhost> 683: 684: * imach.c (Module): Variance-covariance wrong links and 685: varian-covariance of ej. is needed (Saito). 686: 687: 2006-02-27 Brouard Nicolas <brouard@localhost> 688: 689: * imach.c (Module): One freematrix added in mlikeli! 690: 691: 2006-02-26 Brouard Nicolas <brouard@localhost> 692: 693: * imach.c (Module): Some improvements in processing parameter 694: filename with strsep. 695: 696: 2006-02-24 Brouard Nicolas <brouard@localhost> 697: 698: * imach.c (Module): Memory leaks checks with valgrind and: 699: datafile was not closed, some imatrix were not freed and on matrix 700: allocation too. 701: 702: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr> 703: 704: * strsep.c (Module): Inclusion because not in mingw32!!! 705: 706: * setup.iss.in (Module): IMACHSETUPVERSION added 707: 708: * noreg-setup.iss (Module): added to cvs tree 709: 710: * Makefile (Module): IMACHSETUPVERSION added 711: 712: 2006-01-30 BROUARD Nicolas <brouard@localhost> 713: 714: * Makefile (Module, Module): Latest Makefile 715: 716: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe 717: 718: 2006-01-27 BROUARD Nicolas <brouard@localhost> 719: 720: * noreg-setup.iss (Module): ADDED 721: 722: 2006-01-24 BROUARD Nicolas <brouard@localhost> 723: 724: * imach.c (Module): Comments (lines starting with a #) are allowed in data. 725: 726: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr> 727: 728: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg 729: 730: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X 731: 732: 2005-09-30 <lievre@PC_00595> 733: 734: * imach.c (Module): sump fixed, loop imx fixed, and simplifications. 735: (Module): If the status is missing at the last wave but we know 736: that the person is alive, then we can code his/her status as -2 737: (instead of missing=-1 in earlier versions) and his/her 738: contributions to the likelihood is 1 - Prob of dying from last 739: health status (= 1-p13= p11+p12 in the easiest case of somebody in 740: the healthy state at last known wave). Version is 0.98 741: 742: 2004-05-20 Brouard Nicolas <brouard@localhost> 743: 744: * imach.c (Repository): 745: Agnes added a direct estimation of mortality (without the need of 746: computing period prevalence and differential mortality). Thus here 747: is version 0.97a which has been distributed to some people at 748: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of 749: mortality using covariates is not done today. Estimating direct 750: mortality is a very different process because it doesn't need 751: interpolation because it is easy to get the lx from the force of 752: the mortality mux in the simplest case as for a Gompertz (log mux 753: = a + b*x . But we have been able to incorporate the new code 754: within former imach program (0.96d) without deteriorating too much 755: the understanding of the program. 756: 757: 2003-06-25 <brouard@BROUARD> 758: 759: * imach.c (Module): On windows (cygwin) function asctime_r doesn't 760: exist so I changed back to asctime which exists. 761: (Module): Version 0.96b 762: 763: 2003-06-24 <brouard@BROUARD> 764: 765: * imach.c (Module): Some bugs corrected for windows. Also, when 766: mle=-1 a template is output in file "or"mypar.txt with the design 767: of the covariance matrix to be input. 768: 769: 2003-06-25 Brouard Nicolas <brouard@homebrou> 770: 771: * imach.c (Repository): Duplicated warning errors corrected. 772: (Repository): Elapsed time after each iteration is now output. It 773: helps to forecast when convergence will be reached. Elapsed time 774: is stamped in powell. We created a new html file for the graphs 775: concerning matrix of covariance. It has extension -cov.htm. 776: 777: 2003-06-23 Brouard Nicolas <brouard@homebrou> 778: 779: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things. 780: 781: 2003-06-18 Brouard Nicolas <brouard@homebrou> 782: 783: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96 784: 785: 2003-06-17 Brouard Nicolas <brouard@homebrou> 786: 787: 788: * imach.c (Repository): Check when date of death was earlier that 789: current date of interview. It may happen when the death was just 790: prior to the death. In this case, dh was negative and likelihood 791: was wrong (infinity). We still send an "Error" but patch by 792: assuming that the date of death was just one stepm after the 793: interview. 794: (Repository): Because some people have very long ID (first column) 795: we changed int to long in num[] and we added a new lvector for 796: memory allocation. But we also truncated to 8 characters (left 797: truncation) 798: 799: (Repository): No more line truncation errors. 800: 801: 2003-06-14 Brouard Nicolas <brouard@homebrou> 802: 803: * imach.c (Repository): Add of a routine likelione (likelihood 804: only once) which prints on a text file 805: (ilk) the contributions to the likelihood for each 806: individual/wave. 807: 808: 2003-06-13 Brouard Nicolas <brouard@homebrou> 809: * imach.c (Repository): Replace "freqsummary" at a correct 810: place. It differs from routine "prevalence" which may be called 811: many times. Probs is memory consuming and must be used with 812: parcimony. 813: 814: 2003-06-17 <brouard@BROUARD> 815: 816: * timeval.h (Module): Added included file to make use of 817: gettimeofday working on win32 with cygwin. 818: 819: 2003-05-16 Brouard Nicolas <brouard@brouard> 820: * imach.c (Module): Insert of a warning if the delay between two 821: waves is negative. 822: 823: * imach.c (Module): 824: 825: 2003-05-03 <brouard@BROUARD> 826: 827: * imach.c: Some cleaning 828: 829: 2003-03-28 <brouard@BROUARD> 830: * imach.c (Module): In version up to 0.92 likelihood was computed 831: as if date of death was unknown. Death was treated as any other 832: health state: the date of the interview describes the actual state 833: and not the date of a change in health state. The former idea was 834: to consider that at each interview the state was recorded 835: (healthy, disable or death) and IMaCh was corrected; but when we 836: introduced the exact date of death then we should have modified 837: the contribution of an exact death to the likelihood. This new 838: contribution is smaller and very dependent of the step unit 839: stepm. It is no more the probability to die between last interview 840: and month of death but the probability to survive from last 841: interview up to one month before death multiplied by the 842: probability to die within a month. Thanks to Chris 843: Jackson for correcting this bug. Former versions increased 844: mortality artificially. The bad side is that we add another loop 845: which slows down the processing. The difference can be up to 10% 846: lower mortality. 847: 848: 2002-05-30 <brouard@BROUARD> 849: 850: * imach.c (Module): Add correlation matrix of one-step 851: probabilities and covariance matrix 852: