--- imach/src/Makefile	2000/12/28 18:49:56	1.1.1.1
+++ imach/src/Makefile	2014/09/15 20:42:05	1.45
@@ -1,12 +1,385 @@
-# Makefile for imach
-CC= gcc 
-#LFLAGS= -O2 -mno-cygwin
+VERSION=0.98nX
+COPYRIGHT=Copyright (C)  2002-2015 INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121)
+IMACHSETUPVERSION=ilc64
+
+#       Linux
+# make _linux=1 imachopt
+# make _linux=1 imach
+#
+# make _linux32onosx=1 imachopt
+# make _linux64onosx=1 imachopt
+
+#       OS/X
+# make _macosx=1 imach
+# make _macosx=1 imachdmg
+#  valgrind  --dsymutil=yes --leak-check=full --show-leak-kinds=all --track-origins=yes ~/Documents/imachcvs/imach/src/imach-1.129cvsmac radlc-1.129.imach
+
+#        Windows
+# make _windowsonosx=1 imachILC64-setup (touch setup.iss.in) #binary should have been compiled on Windows with cl
+# make _windowsonosx=1 imachMVC-setup (touch setup.iss.in) #binary should have been compiled on Windows with cl
+# make imachMVC-noreg-setup
+#
+#        Windows cross-compiled mw64
+# make _mw64onsox=1 imachcyg-setup
+#
+# make _windows=1 imachcyg
+# make _windows=1 imachcyg-setup (touch setup.iss.in)
+# make _windows=1 imachcyg-noreg-setup
+#
+# make _windowsonlinux=1 imachcyg-setup (touch setup.iss.in)
+# make _windowsonlinux=1 imachcyg-noreg-setup
+#
+# make _windowscl=1 imachclopt
+
+#
+# sortie dans Output/setup.exe
+# ln -s /cygdrive/c/Program\ Files/Inno\ Setup\ 4/Compil32.exe /usr/local/bin/Compil32
+##SETUPCOMP=  "C:\Program Files\Inno Setup 3\Compil32.exe"
+#TESTFILE=$$HOME/Documents/Recherches/REVES/SAITO/Tokyo2014/adlc-test-mac/adecode-1.142c.imach
+#TESTFILE=$(HOME)/Documents/Recherches/REVES/carol/carol-june2014/educadlmwt24.imach
+TESTFILE=$(HOME)/Documents/Recherches/REVES/Biaspar/biaspar-wopowell.imach
+#TESTFILE=$(HOME)/Documents/Recherches/REVES/SAITO/Tokyo2014/adlc-test-mac/adecode-1.142c.imach
+#TESTFILE=$(HOME)/Documents/Recherches/REVES/SAITO/Tokyo2014/adlc_test_magei4/radlc_often.imach
+#CC= gcc -v
+CC=$(GCC)
+GCC= gcc
+
+ifdef _macosx
+# Mac OS/X version
+LFLAGS= -g -lm 
+CFLAGS= -g -DDEBUG 
+LFLAGSOPT= -O3 -lm 
+CFLAGSOPT= -O3 
+UNIX2DOS= echo "Unix2dos " 
+DSYMUTIL= dsymutil
+STRIP= strip
+BINVERSION=OSX
+# Don'know how to launch imach098.pmsp in batch to create package file imach098Panther.pkg
+# ./createdmg.sh imach imach098panther ./imach098Panther
+# ./createdmg.sh imach imach098leopard ./imach098Leopard
+# and directory ./imach098Panther contains package file imach098Panther.pkg
+#./create-dmg --window-size 500 300 --background ~/Projects/eclipse-osx-repackager/build/background.gif --icon-size 96 --volname "Hyper Foo" --icon "Applications" 380 205 --icon "Eclipse OS X Repackager" 110 205 test2.dmg /Users/andreyvit/Projects/eclipse-osx-repackager/temp/Eclipse\ OS\ X\ Repackager\ r10/
+# ./create-dmg --volname "IMaCh 0.98j" imach098j.dmg imach098Leopard
+endif
+
+ifdef _windows
+CC=c:\MinGW\bin\Mingw32-gcc
+
+# Windows cygwin version
 LFLAGS= -g -mno-cygwin
-CFLAGS= -g 
+CFLAGS= -g -mno-cygwin
+LFLAGSOPT= -O3 -mno-cygwin
+CFLAGSOPT= -O3 -mno-cygwin
+UNIX2DOS= unix2dos
+CP= copy
+BINVERSION=CYGWIN
+#SETUPCOMP= Compil32 
+##SETUPCOMP=start /wait "C:\Program\ Files\\Compil32.exe"
+# cygwin SETUPCOMP=  "C:\Program Files\Inno Setup 4\Compil32.exe"
+SETUPCOMP= "C:////Program Files////Inno Setup 4////Compil32.exe"
+endif
+
+ifdef _windowsonlinux
+GCC=/usr/bin/i586-pc-mingw32-gcc
+LFLAGS= -g
+CFLAGS= -g
+LFLAGSOPT= -O3 -lm
+CFLAGSOPT= -O3
+CP= cp
+UNIX2DOS= unix2dos
+SETUPCOMP= wine "C:////Program Files////Inno Setup 4////Compil32.exe"
+BINVERSION=WINDOWSonLINUX
+endif
+
+ifdef _windowsonosx
+#GCC=/usr/local/i386-mingw32-4.3.0/bin/i386-mingw32-gcc
+#GCC=/usr/local/cross-tools/bin/i686-w64-mingw32-gcc
+GCC=/usr/local/gcc-4.8.0-qt-4.8.4-for-mingw32/win32-gcc/bin/i586-mingw32-gcc-4.8.0
+STRIP=/usr/local/gcc-4.8.0-qt-4.8.4-for-mingw32/win32-gcc/bin/i586-mingw32-strip
+LFLAGS= -g
+CFLAGS= -g
+LFLAGSOPT= -O3 -s
+CFLAGSOPT= -O3
+UNIX2DOS= unix2dos
+SETUPCOMP= ~/bin/InnoSetup5Playonmac
+CP= cp
+BINVERSION=WIN32onOSX
+endif
+
+ifdef _mw64onosx
+GCC=/usr/local/mingw-w64-bin_i686-darwin_20130622/bin/x86_64-w64-mingw32-gcc-4.9.0
+STRIP=/usr/local/mingw-w64-bin_i686-darwin_20130622/bin/x86_64-w64-mingw32-strip
+LFLAGS= -g
+CFLAGS= -g
+LFLAGSOPT= -O3 -lm -s
+CFLAGSOPT= -O3
+UNIX2DOS= unix2dos
+SETUPCOMP= ~/bin/InnoSetup5Playonmac
+CP= cp
+BINVERSION=w64-mingw32-x86-64-bin
+endif
+
+ifdef _windowscl
+rem "C:\Program Files\Microsoft Visual Studio 10.0\VC\bin\vcvas32.bat"
+endif
+
+ifdef _linux64onosx
+GCC=/usr/local/gcc-4.8.1-for-linux64/bin/x86_64-pc-linux-gcc
+STRIP=/usr/local/gcc-4.8.1-for-linux64/bin/x86_64-pc-linux-strip
+LFLAGS= -g
+CFLAGS= -g
+LFLAGSOPT= -O3 -lm -s
+CFLAGSOPT= -O3
+UNIX2DOS= unix2dos
+SETUPCOMP= ~/bin/InnoSetup5Playonmac
+CP= cp
+BINVERSION=linux-x86-64-bin
+endif
+
+ifdef _linux32onosx
+#GCC=/usr/local/i386-mingw32-4.3.0/bin/i386-mingw32-gcc
+#GCC=/usr/local/cross-tools/bin/i686-w64-mingw32-gcc
+GCC=/usr/local/gcc-4.8.1-for-linux32/bin/i586-pc-linux-gcc
+STRIP=/usr/local/gcc-4.8.1-for-linux32/bin/i586-pc-linux-strip
+LFLAGS= -g
+CFLAGS= -g
+LFLAGSOPT= -O3 -s -lm
+CFLAGSOPT= -O3
+UNIX2DOS= unix2dos
+SETUPCOMP= ~/bin/InnoSetup5Playonmac
+CP= cp
+BINVERSION=linux-i586-bin
+endif
+
+ifdef _linux
+#CFLAGS= -g -DUNIX -DDEBUGHESS
+CFLAGS= -g -DUNIX -DLINUX
+LFLAGS= -g -lm
+IGSL= -I/usr/include/gsl
+LGSL= -lgsl -lgslcblas
+CFLAGSOPT= -O3 -DUNIX -DLINUX
+LFLAGSOPT= -O3 -lm -s
+UNIX2DOS= unix2dos
+SETUPCOMP= wine "C:////Program Files////Inno Setup 4////Compil32.exe"
+BINVERSION=LINUXnative
+endif
+
+SED= sed
+PACKAGE=imach
+PROGRAM=IMaCh
+
+
+TMPSETUPSCRIPT=setup.iss
+TMPNOREGSETUPSCRIPT=noreg-setup.iss
+TMPSCRIPTIN=setup.iss.in
+APPLICATION=IMaCh
+APPNAME=$(APPLICATION)-$(VERSION)
+GNUPLOTVERSION=4.0
+LICENSE=Copying
+TMPSETUPEXE=imach-$(VERSION)-$(IMACHSETUPVERSION)-setup.exe
+TMPNOREGSETUPEXE=imach-$(VERSION)-$(IMACHSETUPVERSION)-noreg-setup.exe
+LICENSEFILE=$(LICENSE)
+INFOBEFOREFILE=README.txt
+
+setup.iss: setup.iss.in
+	$(SED) -e "s/@APPNAME@/$(APPNAME)/g; \
+		s/@NOTINNOREG@//g; \
+		s/@NOREG@//g; \
+		s/@IMACHSETUPVERSION@/$(IMACHSETUPVERSION)/g; \
+		s/@VERSION@/$(VERSION)/g; \
+		s/@GNUPLOTVERSION@/$(GNUPLOTVERSION)/g; \
+		s/@INFOBEFOREFILE@/$(INFOBEFOREFILE)/g; \
+		s/@LICENSEFILE@/$(LICENSEFILE)/g; \
+		s/@PACKAGE@/$(PACKAGE)/g; \
+		s/@DICTLANG@/$(DICTLANG)/g; \
+	   	s/@VERMAJOR@/$(VERMAJOR)/g; \
+		s/@COPYRIGHT@/$(COPYRIGHT)/g;" \
+		setup.iss.in > setup.iss
+
+$(TMPNOREGSETUPSCRIPT): $(TMPSCRIPTIN)
+	$(SED) -e "s/@APPNAME@/$(APPNAME)/g; \
+		s/@NOTINNOREG@/\\;/g; \
+		s/@NOREG@/noreg-/g; \
+		s/@IMACHSETUPVERSION@/$(IMACHSETUPVERSION)/g; \
+		s/@VERSION@/$(VERSION)/g; \
+		s/@GNUPLOTVERSION@/$(GNUPLOTVERSION)/g; \
+		s/@INFOBEFOREFILE@/$(INFOBEFOREFILE)/g; \
+		s/@LICENSEFILE@/$(LICENSEFILE)/g; \
+		s/@PACKAGE@/$(PACKAGE)/g; \
+		s/@DICTLANG@/$(DICTLANG)/g; \
+	   	s/@VERMAJOR@/$(VERMAJOR)/g; \
+		s/@COPYRIGHT@/$(COPYRIGHT)/g;" \
+		$(TMPSCRIPTIN) > $(TMPNOREGSETUPSCRIPT)
+#	$(UNIX2DOS) $(TMPNOREGSETUPSCRIPT)
+
+$(TMPSETUPEXE): $(TMPSETUPSCRIPT)
+	$(SETUPCOMP) /cc $(TMPSETUPSCRIPT)
+
+$(TMPNOREGSETUPEXE): $(TMPNOREGSETUPSCRIPT)
+	$(SETUPCOMP) /cc $(TMPNOREGSETUPSCRIPT)
+
+PARAM=mypar1
+
+imachcyg-setup: imachcygopt.exe setup.iss
+	touch setup.iss.in
+	$(CP) imachcygopt.exe imach.exe
+	$(CP) imachcygopt.exe imach$(VERSION)-$(BINVERSION).exe
+	$(SETUPCOMP) /cc setup.iss
+	cp Output/$(TMPSETUPEXE) imachcyg-setup
+
+# imachcyg-noreg-setup : imachcygopt imachcygopt.o setup.iss.in noreg-setup.iss $(TMPNOREGSETUPEXE)
+imachcyg-noreg-setup: imachcygopt.exe noreg-setup.iss
+	touch setup.iss.in
+	$(CP) imachcygopt.exe imach.exe
+	$(CP) imachcygopt.exe imach$(VERSION)-$(BINVERSION).exe
+	$(SETUPCOMP) /cc $(TMPNOREGSETUPSCRIPT)
+	cp Output/$(TMPNOREGSETUPEXE) imachcyg-noreg-setup
+
+imachILC64-setup: IMaCh-ilc64.exe setup.iss
+	touch setup.iss.in
+	$(CP) IMaCh-ilc64.exe imach.exe
+	$(SETUPCOMP) /cc setup.iss
+	$(CP) Output/$(TMPSETUPEXE) imachILC64-setup
+
+imachILC64-noreg-setup: IMaCh-ilc64.exe noreg-setup.iss
+	touch setup.iss.in
+	$(CP) IMaCh-ilc64.exe imach.exe
+	$(SETUPCOMP) /cc $(TMPNOREGSETUPSCRIPT)
+	$(CP) Output/$(TMPSETUPEXE) imachILC64-noreg-setup
+
+imachMVC-setup: imachMVC.exe setup.iss
+	touch setup.iss.in
+	$(CP) imachMVC.exe imach.exe
+	$(SETUPCOMP) /cc setup.iss
+	$(CP) Output/$(TMPSETUPEXE) imachcyg-setup
+
+# imachcyg-noreg-setup : imachcygopt imachcygopt.o setup.iss.in noreg-setup.iss $(TMPNOREGSETUPEXE)
+imachMVC-noreg-setup: imachMVC.exe noreg-setup.iss
+	touch setup.iss.in
+	$(CP) imachMVC.exe imach.exe
+	$(SETUPCOMP) /cc $(TMPNOREGSETUPSCRIPT)
+	$(CP) Output/$(TMPNOREGSETUPEXE) imachcyg-noreg-setup
+
+simach : simach.o 
+	$(CC) $(LFLAGS) $(LGSL) -o simach simach.o
+simach.o : simach.c 
+	$(CC) $(CFLAGS) -DGSL -c simach.c
 
 imach : imach.o 
 	$(CC) $(LFLAGS) -o imach imach.o
+ifdef _macosx
+	$(DSYMUTIL) imach
+endif
+
 imach.o : imach.c 
-	$(CC) $(LFLAGS) -c imach.c
-graph : 
-	./wgnuplot graph.gp
+	$(CC) $(CFLAGS) -c imach.c
+
+# $(CC) $(CFLAGS) -DPOWELL -c imach.c
+
+# http://msdn.microsoft.com/en-us/library/abx4dbyh%28v=vs.100%29.aspx
+imachcl: imach.c
+	cl /O2 /MT /o imach.exe imach.c
+
+imach097b : imach097b.o 
+	$(CC) $(LFLAGS) -o imach097b imach097b.o
+imach097b.o : imach097b.c 
+	$(CC) $(CFLAGS) -DPOWELL -c imach097b.c
+
+
+imachsimplified : imachsimplified.o 
+	$(CC)  $(LFLAGSOPT) -o imachsimplified imachsimplified.o
+imachsimplified.o : imachsimplified.c 
+	$(CC) $(CFLAGSOPT) -DPOWELL -c imachsimplified.c
+
+imachgsl : imachgsl.o 
+	$(CC) $(LFLAGS) $(LGSL) -o imachgsl imach.o
+imachgsl.o : imach.c 
+	$(CC) $(CFLAGS) -DGSL $(IGSL) -c imach.c
+
+imachopt : imachopt.o 
+	$(CC) $(LFLAGSOPT) -o imachopt imachopt.o
+	ln -f imachopt imach
+ifdef _macosx
+	$(STRIP) imach
+	cp imach ../bin
+endif
+ifdef _linux32onosx
+	$(CP) imachopt Output/imachopt$(VERSION)-$(BINVERSION)
+	cp -f imach ../bin
+	(cd .. && gnutar jcvf src/Output/imach-Linux-$(VERSION)-$(BINVERSION).tar.bz2 bin html/doc/biaspar.imach html/doc/data1.txt)
+endif
+ifdef _linux64onosx
+	$(CP) imachopt Output/imachopt$(VERSION)-$(BINVERSION)
+	cp -f imach ../bin
+	(cd .. && gnutar jcvf src/Output/imach-Linux-$(VERSION)-$(BINVERSION).tar.bz2 bin html/doc/biaspar.imach html/doc/data1.txt)
+endif
+
+imachopt.o : imach.c 
+	$(CC) $(CFLAGSOPT) -o imachopt.o -c imach.c
+
+#	$(CC) $(CFLAGSOPT) -DPOWELL -o imachopt.o -c imach.c
+
+imachdmg : imachopt.o create-dmg applet IMaChInfo.plist.in IMaChPkgInfo.in IMaCh.icns main.scpt.in IMaCh-ecrandemarrage.rsrc TXT.rtf
+	$(CC) $(LFLAGSOPT) -o imach imachopt.o
+	#hdiutil detach /Volumes/IMaCh\ $(VERSION)
+	rm -rf imach$(VERSION).app
+	mkdir -p imach$(VERSION).app
+	mkdir -p imach$(VERSION).app/Contents
+	mkdir -p imach$(VERSION).app/Contents/MacOS
+	cp applet imach$(VERSION).app/Contents/MacOS
+	mkdir -p imach$(VERSION).app/Contents/Resources
+	mkdir -p imach$(VERSION).app/Contents/Resources/Scripts
+	mkdir -p imach$(VERSION).app/Contents/Resources/bin
+	mkdir -p imach$(VERSION).app/Contents/Resources/html
+	cp imach imach$(VERSION).app/Contents/Resources/bin
+	cp gnuplot_bin/gnuplot_2_6_5_OSX imach$(VERSION).app/Contents/Resources/bin/gnuplot
+	mkdir -p imach$(VERSION).app/Contents/Resources/description.rtfd
+	cp -p TXT.rtf imach$(VERSION).app/Contents/Resources/description.rtfd
+	$(SED) -e "s/@VERSION@/$(VERSION)/g;" \
+	IMaChInfo.plist.in  >imach$(VERSION).app/Contents/Info.plist
+	cp -p IMaChPkgInfo.in  imach$(VERSION).app/Contents/PkgInfo
+	cp -p IMaCh.icns  imach$(VERSION).app/Contents/Resources/applet.icns
+	cp -r -p main.scpt.in imach$(VERSION).app/Contents/Resources/Scripts/main.scpt
+	cp IMaCH-ecrandemarrage.rsrc imach$(VERSION).app/Contents/Resources/applet.rsrc
+	cp ../html/doc/data1.txt  imach$(VERSION).app/Contents/Resources/html
+	cp ../html/doc/biaspar.log  imach$(VERSION).app/Contents/Resources/html
+	cp ../html/doc/biaspar.imach  imach$(VERSION).app/Contents/Resources/html
+	rm -f imach$(VERSION).dmg
+	./createdmg3.sh --volname "IMaCh $(VERSION)" imach$(VERSION).dmg imach$(VERSION)
+	mv  imach$(VERSION).dmg Output/
+#	./create-dmg --volname "IMaCh $(VERSION)" imach$(VERSION).dmg imach$(VERSION).app
+#	./createdmg2.sh --volname "IMaCh $(VERSION)" imach$(VERSION).dmg imach$(VERSION)
+
+upload:
+	ls Output/* | xargs md5sum
+	rsync -v Output/* brouard@henry.ined.fr:/home/euroreves/html/imach/
+
+imachcyg : imachcyg.o
+	$(CC) $(LFLAGS) -o imach imachcyg.o
+imachcyg.o : imach.c 
+	$(CC) $(CFLAGS)  -c -o imachcyg.o imach.c
+imachcygopt.exe : imachcygopt.o
+	$(CC) $(LFLAGSOPT) -o imachcygopt.exe imachcygopt.o
+imachcygopt.o : imach.c 
+	$(CC) $(CFLAGSOPT) -c -o imachcygopt.o imach.c
+
+imachw32.o : imach.c
+	i386-mingw32-gcc -c imach.c -o imachw32.o
+imach.exe : imachw32.o 
+	i386-mingw32-gcc  -mwindows -o imach.exe -lm imachw32.o
+	i386-mingw32-strip imach.exe
+
+valgrind-test :  imach $(TESTFILE) 
+	valgrind  --dsymutil=yes --leak-check=full --show-leak-kinds=all --track-origins=yes ./imach $(TESTFILE)
+test:  imach $(TESTFILE) 
+	gdb ./imach $(TESTFILE)
+
+$(PARAM).htm: imach $(PARAM).imach data1.txt
+	./imach $(PARAM).imach
+
+clean: 
+	rm or$(PARAM).txt er$(PARAM).txt pijr$(PARAM).txt plr$(PARAM).txt \
+	r$(PARAM).txt tr$(PARAM).txt vpl$(PARAM).txt pr$(PARAM).txt \
+	vr$(PARAM).txt *.gif imach.exe imach.o
+
+