version 1.151, 2014/06/18 16:43:30
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version 1.155, 2014/08/25 18:32:34
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.155 2014/08/25 18:32:34 brouard |
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Summary: New compile, minor changes |
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Author: Brouard |
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Revision 1.154 2014/06/20 17:32:08 brouard |
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Summary: Outputs now all graphs of convergence to period prevalence |
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Revision 1.153 2014/06/20 16:45:46 brouard |
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Summary: If 3 live state, convergence to period prevalence on same graph |
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Author: Brouard |
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Revision 1.152 2014/06/18 17:54:09 brouard |
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Summary: open browser, use gnuplot on same dir than imach if not found in the path |
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Revision 1.151 2014/06/18 16:43:30 brouard |
Revision 1.151 2014/06/18 16:43:30 brouard |
*** empty log message *** |
*** empty log message *** |
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Line 506 extern int errno;
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Line 520 extern int errno;
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/* $Id$ */ |
/* $Id$ */ |
/* $State$ */ |
/* $State$ */ |
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char version[]="Imach version 0.98nT, January 2014,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121)"; |
char version[]="Imach version 0.98nV, August 2014,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121)"; |
char fullversion[]="$Revision$ $Date$"; |
char fullversion[]="$Revision$ $Date$"; |
char strstart[80]; |
char strstart[80]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
Line 3885 fprintf(fichtm," \n<ul><li><b>Graphs</b>
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Line 3899 fprintf(fichtm," \n<ul><li><b>Graphs</b>
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before but expressed in per year i.e. quasi incidences if stepm is small and probabilities too: <a href=\"%s%d_2.png\">%s%d_2.png</a><br> \ |
before but expressed in per year i.e. quasi incidences if stepm is small and probabilities too: <a href=\"%s%d_2.png\">%s%d_2.png</a><br> \ |
<img src=\"%s%d_2.png\">",stepm,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1); |
<img src=\"%s%d_2.png\">",stepm,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1); |
/* Period (stable) prevalence in each health state */ |
/* Period (stable) prevalence in each health state */ |
for(cpt=1; cpt<nlstate;cpt++){ |
for(cpt=1; cpt<=nlstate;cpt++){ |
fprintf(fichtm,"<br>- Period (stable) prevalence in each health state : <a href=\"%s%d_%d.png\">%s%d_%d.png</a><br> \ |
fprintf(fichtm,"<br>- Convergence from each state (1 to %d) to period (stable) prevalence in state %d <a href=\"%s%d_%d.png\">%s%d_%d.png</a><br> \ |
<img src=\"%s%d_%d.png\">",subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1); |
<img src=\"%s%d_%d.png\">",nlstate, cpt, subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1); |
} |
} |
for(cpt=1; cpt<=nlstate;cpt++) { |
for(cpt=1; cpt<=nlstate;cpt++) { |
fprintf(fichtm,"\n<br>- Life expectancy by health state (%d) at initial age and its decomposition into health expectancies : <a href=\"%s%d%d.png\">%s%d%d.png</a> <br> \ |
fprintf(fichtm,"\n<br>- Life expectancy by health state (%d) at initial age and its decomposition into health expectancies in each alive state (1 to %d) : <a href=\"%s%d%d.png\">%s%d%d.png</a> <br> \ |
<img src=\"%s%d%d.png\">",cpt,subdirf2(optionfilefiname,"exp"),cpt,jj1,subdirf2(optionfilefiname,"exp"),cpt,jj1,subdirf2(optionfilefiname,"exp"),cpt,jj1); |
<img src=\"%s%d%d.png\">",cpt,nlstate,subdirf2(optionfilefiname,"exp"),cpt,jj1,subdirf2(optionfilefiname,"exp"),cpt,jj1,subdirf2(optionfilefiname,"exp"),cpt,jj1); |
} |
} |
} /* end i1 */ |
} /* end i1 */ |
}/* End k1 */ |
}/* End k1 */ |
Line 3987 void printinggnuplot(char fileres[], cha
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Line 4001 void printinggnuplot(char fileres[], cha
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strcpy(dirfileres,optionfilefiname); |
strcpy(dirfileres,optionfilefiname); |
strcpy(optfileres,"vpl"); |
strcpy(optfileres,"vpl"); |
/* 1eme*/ |
/* 1eme*/ |
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fprintf(ficgp,"\n# 1st: Period (stable) prevalence with CI: 'vpl' files\n"); |
for (cpt=1; cpt<= nlstate ; cpt ++) { |
for (cpt=1; cpt<= nlstate ; cpt ++) { |
for (k1=1; k1<= m ; k1 ++) { /* plot [100000000000000000000:-100000000000000000000] "mysbiaspar/vplrmysbiaspar.txt to check */ |
for (k1=1; k1<= m ; k1 ++) { /* plot [100000000000000000000:-100000000000000000000] "mysbiaspar/vplrmysbiaspar.txt to check */ |
fprintf(ficgp,"\nset out \"%s%d_%d.png\" \n",subdirf2(optionfilefiname,"v"),cpt,k1); |
fprintf(ficgp,"\nset out \"%s%d_%d.png\" \n",subdirf2(optionfilefiname,"v"),cpt,k1); |
Line 4014 plot [%.f:%.f] \"%s\" every :::%d::%d u
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Line 4029 plot [%.f:%.f] \"%s\" every :::%d::%d u
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} |
} |
} |
} |
/*2 eme*/ |
/*2 eme*/ |
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fprintf(ficgp,"\n# 2nd: Total life expectancy with CI: 't' files\n"); |
for (k1=1; k1<= m ; k1 ++) { |
for (k1=1; k1<= m ; k1 ++) { |
fprintf(ficgp,"\nset out \"%s%d.png\" \n",subdirf2(optionfilefiname,"e"),k1); |
fprintf(ficgp,"\nset out \"%s%d.png\" \n",subdirf2(optionfilefiname,"e"),k1); |
fprintf(ficgp,"set ylabel \"Years\" \nset ter png small size 320, 240\nplot [%.f:%.f] ",ageminpar,fage); |
fprintf(ficgp,"set ylabel \"Years\" \nset ter png small size 320, 240\nplot [%.f:%.f] ",ageminpar,fage); |
Line 4071 plot [%.f:%.f] \"%s\" every :::%d::%d u
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Line 4086 plot [%.f:%.f] \"%s\" every :::%d::%d u
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} |
} |
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/* CV preval stable (period) */ |
/* CV preval stable (period) */ |
for (k1=1; k1<= m ; k1 ++) { |
for (k1=1; k1<= m ; k1 ++) { /* For each multivariate if any */ |
for (cpt=1; cpt<=nlstate ; cpt ++) { |
for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life state */ |
k=3; |
k=3; |
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fprintf(ficgp,"\n#\n#\n#CV preval stable (period): 'pij' files, cov=%d state=%d",k1, cpt); |
fprintf(ficgp,"\nset out \"%s%d_%d.png\" \n",subdirf2(optionfilefiname,"p"),cpt,k1); |
fprintf(ficgp,"\nset out \"%s%d_%d.png\" \n",subdirf2(optionfilefiname,"p"),cpt,k1); |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
set ter png small size 320, 240\n\ |
set ter png small size 320, 240\n\ |
unset log y\n\ |
unset log y\n\ |
plot [%.f:%.f] \"%s\" u ($1==%d ? ($3):1/0):($%d/($%d",ageminpar,agemaxpar,subdirf2(fileres,"pij"),k1,k+cpt+1,k+1); |
plot [%.f:%.f] ", ageminpar, agemaxpar); |
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for (i=1; i<= nlstate ; i ++){ |
for (i=1; i< nlstate ; i ++) |
if(i==1) |
fprintf(ficgp,"+$%d",k+i+1); |
fprintf(ficgp,"\"%s\"",subdirf2(fileres,"pij")); |
fprintf(ficgp,")) t\"prev(%d,%d)\" w l",cpt,cpt+1); |
else |
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fprintf(ficgp,", '' "); |
l=3+(nlstate+ndeath)*cpt; |
l=(nlstate+ndeath)*(i-1)+1; |
fprintf(ficgp,",\"%s\" u ($1==%d ? ($3):1/0):($%d/($%d",subdirf2(fileres,"pij"),k1,l+cpt+1,l+1); |
fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l+(cpt-1),k+l); |
for (i=1; i< nlstate ; i ++) { |
for (j=1; j<= (nlstate-1) ; j ++) |
l=3+(nlstate+ndeath)*cpt; |
fprintf(ficgp,"+$%d",k+l+j); |
fprintf(ficgp,"+$%d",l+i+1); |
fprintf(ficgp,")) t \"prev(%d,%d)\" w l",i,cpt); |
} |
} /* nlstate */ |
fprintf(ficgp,")) t\"prev(%d,%d)\" w l\n",cpt+1,cpt+1); |
fprintf(ficgp,"\n"); |
} |
} /* end cpt state*/ |
} |
} /* end covariate */ |
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/* proba elementaires */ |
/* proba elementaires */ |
for(i=1,jk=1; i <=nlstate; i++){ |
for(i=1,jk=1; i <=nlstate; i++){ |
Line 5396 int main(int argc, char *argv[])
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Line 5412 int main(int argc, char *argv[])
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/*---------arguments file --------*/ |
/*---------arguments file --------*/ |
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if((ficpar=fopen(optionfile,"r"))==NULL) { |
if((ficpar=fopen(optionfile,"r"))==NULL) { |
printf("Problem with optionfile %s with errno=%s\n",optionfile,strerror(errno)); |
printf("Problem with optionfile '%s' with errno='%s'\n",optionfile,strerror(errno)); |
fprintf(ficlog,"Problem with optionfile %s with errno=%s\n",optionfile,strerror(errno)); |
fprintf(ficlog,"Problem with optionfile '%s' with errno='%s'\n",optionfile,strerror(errno)); |
fflush(ficlog); |
fflush(ficlog); |
/* goto end; */ |
/* goto end; */ |
exit(70); |
exit(70); |
Line 6651 Interval (in months) between two waves:
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Line 6667 Interval (in months) between two waves:
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sprintf(plotcmd,"\"%sgnuplot.exe\"",pathimach); |
sprintf(plotcmd,"\"%sgnuplot.exe\"",pathimach); |
#endif |
#endif |
if(!stat(plotcmd,&info)){ |
if(!stat(plotcmd,&info)){ |
printf("Error gnuplot program not found: %s\n",plotcmd);fflush(stdout); |
printf("Error or gnuplot program not found: %s\n",plotcmd);fflush(stdout); |
if(!stat(getenv("GNUPLOTBIN"),&info)){ |
if(!stat(getenv("GNUPLOTBIN"),&info)){ |
printf("Error gnuplot program not found: %s Environment GNUPLOTBIN not set.\n",plotcmd);fflush(stdout); |
printf("Error or gnuplot program not found: %s Environment GNUPLOTBIN not set.\n",plotcmd);fflush(stdout); |
}else |
}else |
strcpy(pplotcmd,plotcmd); |
strcpy(pplotcmd,plotcmd); |
#ifdef UNIX |
#ifdef UNIX |
Line 6670 Interval (in months) between two waves:
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Line 6686 Interval (in months) between two waves:
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printf("Starting graphs with: %s\n",plotcmd);fflush(stdout); |
printf("Starting graphs with: %s\n",plotcmd);fflush(stdout); |
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if((outcmd=system(plotcmd)) != 0){ |
if((outcmd=system(plotcmd)) != 0){ |
printf("\n Problem with gnuplot command %s\n", plotcmd); |
printf("gnuplot command might not be in your path: %s, err=%d\n", plotcmd, outcmd); |
printf("\n Trying on same directory\n"); |
printf("\n Trying if gnuplot resides on the same directory that IMaCh\n"); |
sprintf(plotcmd,"./gnuplot %s", optionfilegnuplot); |
sprintf(plotcmd,"%sgnuplot %s", pathimach, optionfilegnuplot); |
if((outcmd=system(plotcmd)) != 0) |
if((outcmd=system(plotcmd)) != 0) |
printf("\n Still a problem with gnuplot command %s\n", plotcmd); |
printf("\n Still a problem with gnuplot command %s, err=%d\n", plotcmd, outcmd); |
} |
} |
printf(" Wait..."); |
printf(" Successul, please wait..."); |
while (z[0] != 'q') { |
while (z[0] != 'q') { |
/* chdir(path); */ |
/* chdir(path); */ |
printf("\nType e to edit output files, g to graph again and q for exiting: "); |
printf("\nType e to edit results with your browser, g to graph again and q for exit: "); |
scanf("%s",z); |
scanf("%s",z); |
/* if (z[0] == 'c') system("./imach"); */ |
/* if (z[0] == 'c') system("./imach"); */ |
if (z[0] == 'e') { |
if (z[0] == 'e') { |
printf("Starting browser with: %s",optionfilehtm);fflush(stdout); |
#ifdef OSX |
system(optionfilehtm); |
sprintf(pplotcmd, "open %s", optionfilehtm); |
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#else |
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sprintf(pplotcmd, "%s", optionfilehtm); |
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#endif |
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printf("Starting browser with: %s",pplotcmd);fflush(stdout); |
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system(pplotcmd); |
} |
} |
else if (z[0] == 'g') system(plotcmd); |
else if (z[0] == 'g') system(plotcmd); |
else if (z[0] == 'q') exit(0); |
else if (z[0] == 'q') exit(0); |