version 1.153, 2014/06/20 16:45:46
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version 1.154, 2014/06/20 17:32:08
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.154 2014/06/20 17:32:08 brouard |
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Summary: Outputs now all graphs of convergence to period prevalence |
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Revision 1.153 2014/06/20 16:45:46 brouard |
Revision 1.153 2014/06/20 16:45:46 brouard |
Summary: If 3 live state, convergence to period prevalence on same graph |
Summary: If 3 live state, convergence to period prevalence on same graph |
Author: Brouard |
Author: Brouard |
Line 513 extern int errno;
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Line 516 extern int errno;
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/* $Id$ */ |
/* $Id$ */ |
/* $State$ */ |
/* $State$ */ |
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char version[]="Imach version 0.98nT, January 2014,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121)"; |
char version[]="Imach version 0.98nU, January 2014,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121)"; |
char fullversion[]="$Revision$ $Date$"; |
char fullversion[]="$Revision$ $Date$"; |
char strstart[80]; |
char strstart[80]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
Line 3892 fprintf(fichtm," \n<ul><li><b>Graphs</b>
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Line 3895 fprintf(fichtm," \n<ul><li><b>Graphs</b>
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before but expressed in per year i.e. quasi incidences if stepm is small and probabilities too: <a href=\"%s%d_2.png\">%s%d_2.png</a><br> \ |
before but expressed in per year i.e. quasi incidences if stepm is small and probabilities too: <a href=\"%s%d_2.png\">%s%d_2.png</a><br> \ |
<img src=\"%s%d_2.png\">",stepm,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1); |
<img src=\"%s%d_2.png\">",stepm,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1); |
/* Period (stable) prevalence in each health state */ |
/* Period (stable) prevalence in each health state */ |
for(cpt=1; cpt<nlstate;cpt++){ |
for(cpt=1; cpt<=nlstate;cpt++){ |
fprintf(fichtm,"<br>- Period (stable) prevalence in each health state : <a href=\"%s%d_%d.png\">%s%d_%d.png</a><br> \ |
fprintf(fichtm,"<br>- Convergence from each state (1 to %d) to period (stable) prevalence in state %d <a href=\"%s%d_%d.png\">%s%d_%d.png</a><br> \ |
<img src=\"%s%d_%d.png\">",subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1); |
<img src=\"%s%d_%d.png\">",nlstate, cpt, subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1); |
} |
} |
for(cpt=1; cpt<=nlstate;cpt++) { |
for(cpt=1; cpt<=nlstate;cpt++) { |
fprintf(fichtm,"\n<br>- Life expectancy by health state (%d) at initial age and its decomposition into health expectancies : <a href=\"%s%d%d.png\">%s%d%d.png</a> <br> \ |
fprintf(fichtm,"\n<br>- Life expectancy by health state (%d) at initial age and its decomposition into health expectancies in each alive state (1 to %d) : <a href=\"%s%d%d.png\">%s%d%d.png</a> <br> \ |
<img src=\"%s%d%d.png\">",cpt,subdirf2(optionfilefiname,"exp"),cpt,jj1,subdirf2(optionfilefiname,"exp"),cpt,jj1,subdirf2(optionfilefiname,"exp"),cpt,jj1); |
<img src=\"%s%d%d.png\">",cpt,nlstate,subdirf2(optionfilefiname,"exp"),cpt,jj1,subdirf2(optionfilefiname,"exp"),cpt,jj1,subdirf2(optionfilefiname,"exp"),cpt,jj1); |
} |
} |
} /* end i1 */ |
} /* end i1 */ |
}/* End k1 */ |
}/* End k1 */ |
Line 4084 plot [%.f:%.f] \"%s\" every :::%d::%d u
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Line 4087 plot [%.f:%.f] \"%s\" every :::%d::%d u
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k=3; |
k=3; |
fprintf(ficgp,"\n#\n#\n#CV preval stable (period): 'pij' files, cov=%d state=%d",k1, cpt); |
fprintf(ficgp,"\n#\n#\n#CV preval stable (period): 'pij' files, cov=%d state=%d",k1, cpt); |
fprintf(ficgp,"\nset out \"%s%d_%d.png\" \n",subdirf2(optionfilefiname,"p"),cpt,k1); |
fprintf(ficgp,"\nset out \"%s%d_%d.png\" \n",subdirf2(optionfilefiname,"p"),cpt,k1); |
l=(nlstate+ndeath)*(cpt-1)+1; |
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fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
set ter png small size 320, 240\n\ |
set ter png small size 320, 240\n\ |
unset log y\n\ |
unset log y\n\ |
Line 4094 plot [%.f:%.f] ", ageminpar, agemaxpar)
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Line 4096 plot [%.f:%.f] ", ageminpar, agemaxpar)
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fprintf(ficgp,"\"%s\"",subdirf2(fileres,"pij")); |
fprintf(ficgp,"\"%s\"",subdirf2(fileres,"pij")); |
else |
else |
fprintf(ficgp,", '' "); |
fprintf(ficgp,", '' "); |
fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l,k+l); |
l=(nlstate+ndeath)*(i-1)+1; |
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fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l+(cpt-1),k+l); |
for (j=1; j<= (nlstate-1) ; j ++) |
for (j=1; j<= (nlstate-1) ; j ++) |
fprintf(ficgp,"+$%d",k+l+j); |
fprintf(ficgp,"+$%d",k+l+j); |
fprintf(ficgp,")) t \"prev(%d,%d)\" w l",i,cpt); |
fprintf(ficgp,")) t \"prev(%d,%d)\" w l",i,cpt); |
Line 6679 Interval (in months) between two waves:
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Line 6682 Interval (in months) between two waves:
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printf("Starting graphs with: %s\n",plotcmd);fflush(stdout); |
printf("Starting graphs with: %s\n",plotcmd);fflush(stdout); |
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if((outcmd=system(plotcmd)) != 0){ |
if((outcmd=system(plotcmd)) != 0){ |
printf("\n Problem with gnuplot command %s, err=%d\n", plotcmd, outcmd); |
printf("gnuplot command might not be in your path: %s, err=%d\n", plotcmd, outcmd); |
printf("\n Trying on same directory\n"); |
printf("\n Trying if gnuplot resides on the same directory that IMaCh\n"); |
sprintf(plotcmd,"%sgnuplot %s", pathimach, optionfilegnuplot); |
sprintf(plotcmd,"%sgnuplot %s", pathimach, optionfilegnuplot); |
if((outcmd=system(plotcmd)) != 0) |
if((outcmd=system(plotcmd)) != 0) |
printf("\n Still a problem with gnuplot command %s, err=%d\n", plotcmd, outcmd); |
printf("\n Still a problem with gnuplot command %s, err=%d\n", plotcmd, outcmd); |
} |
} |
printf(" Wait..."); |
printf(" Successul, please wait..."); |
while (z[0] != 'q') { |
while (z[0] != 'q') { |
/* chdir(path); */ |
/* chdir(path); */ |
printf("\nType e to edit output files, g to graph again and q for exiting: "); |
printf("\nType e to edit results with your browser, g to graph again and q for exit: "); |
scanf("%s",z); |
scanf("%s",z); |
/* if (z[0] == 'c') system("./imach"); */ |
/* if (z[0] == 'c') system("./imach"); */ |
if (z[0] == 'e') { |
if (z[0] == 'e') { |