version 1.163, 2014/12/16 10:30:11
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version 1.166, 2014/12/22 11:40:47
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.166 2014/12/22 11:40:47 brouard |
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*** empty log message *** |
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Revision 1.165 2014/12/16 11:20:36 brouard |
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Summary: After compiling on Visual C |
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* imach.c (Module): Merging 1.61 to 1.162 |
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Revision 1.164 2014/12/16 10:52:11 brouard |
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Summary: Merging with Visual C after suppressing some warnings for unused variables. Also fixing Saito's bug 0.98Xn |
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* imach.c (Module): Merging 1.61 to 1.162 |
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Revision 1.163 2014/12/16 10:30:11 brouard |
Revision 1.163 2014/12/16 10:30:11 brouard |
* imach.c (Module): Merging 1.61 to 1.162 |
* imach.c (Module): Merging 1.61 to 1.162 |
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Line 492
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Line 505
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end |
end |
*/ |
*/ |
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#define POWELL /* Instead of NLOPT */ |
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#include <math.h> |
#include <math.h> |
#include <stdio.h> |
#include <stdio.h> |
#include <stdlib.h> |
#include <stdlib.h> |
Line 557 typedef struct {
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Line 569 typedef struct {
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#define YEARM 12. /**< Number of months per year */ |
#define YEARM 12. /**< Number of months per year */ |
#define AGESUP 130 |
#define AGESUP 130 |
#define AGEBASE 40 |
#define AGEBASE 40 |
#define AGEGOMP 10. /**< Minimal age for Gompertz adjustment */ |
#define AGEGOMP 10 /**< Minimal age for Gompertz adjustment */ |
#ifdef _WIN32 |
#ifdef _WIN32 |
#define DIRSEPARATOR '\\' |
#define DIRSEPARATOR '\\' |
#define CHARSEPARATOR "\\" |
#define CHARSEPARATOR "\\" |
Line 686 static double maxarg1,maxarg2;
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Line 698 static double maxarg1,maxarg2;
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#define SIGN(a,b) ((b)>0.0 ? fabs(a) : -fabs(a)) |
#define SIGN(a,b) ((b)>0.0 ? fabs(a) : -fabs(a)) |
#define rint(a) floor(a+0.5) |
#define rint(a) floor(a+0.5) |
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/* http://www.thphys.uni-heidelberg.de/~robbers/cmbeasy/doc/html/myutils_8h-source.html */ |
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/* #define mytinydouble 1.0e-16 */ |
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/* #define DEQUAL(a,b) (fabs((a)-(b))<mytinydouble) */ |
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/* http://www.thphys.uni-heidelberg.de/~robbers/cmbeasy/doc/html/mynrutils_8h-source.html */ |
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/* static double dsqrarg; */ |
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/* #define DSQR(a) (DEQUAL((dsqrarg=(a)),0.0) ? 0.0 : dsqrarg*dsqrarg) */ |
static double sqrarg; |
static double sqrarg; |
#define SQR(a) ((sqrarg=(a)) == 0.0 ? 0.0 :sqrarg*sqrarg) |
#define SQR(a) ((sqrarg=(a)) == 0.0 ? 0.0 :sqrarg*sqrarg) |
#define SWAP(a,b) {temp=(a);(a)=(b);(b)=temp;} |
#define SWAP(a,b) {temp=(a);(a)=(b);(b)=temp;} |
Line 1149 double brent(double ax, double bx, doubl
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Line 1166 double brent(double ax, double bx, doubl
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int iter; |
int iter; |
double a,b,d,etemp; |
double a,b,d,etemp; |
double fu=0,fv,fw,fx; |
double fu=0,fv,fw,fx; |
double ftemp; |
double ftemp=0.; |
double p,q,r,tol1,tol2,u,v,w,x,xm; |
double p,q,r,tol1,tol2,u,v,w,x,xm; |
double e=0.0; |
double e=0.0; |
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Line 1383 void powell(double p[], double **xi, int
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Line 1400 void powell(double p[], double **xi, int
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for (j=1;j<=n;j++) xit[j]=xi[j][i]; |
for (j=1;j<=n;j++) xit[j]=xi[j][i]; |
fptt=(*fret); |
fptt=(*fret); |
#ifdef DEBUG |
#ifdef DEBUG |
printf("fret=%lf \n",*fret); |
printf("fret=%lf, %lf, %lf \n", *fret, *fret, *fret); |
fprintf(ficlog,"fret=%lf \n",*fret); |
fprintf(ficlog, "fret=%lf, %lf, %lf \n", *fret, *fret, *fret); |
#endif |
#endif |
printf("%d",i);fflush(stdout); |
printf("%d",i);fflush(stdout); |
fprintf(ficlog,"%d",i);fflush(ficlog); |
fprintf(ficlog,"%d",i);fflush(ficlog); |
Line 1481 void powell(double p[], double **xi, int
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Line 1498 void powell(double p[], double **xi, int
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fprintf(ficlog,"Gaining to use average direction of P0 P%d instead of biggest increase direction :\n",n,ibig); |
fprintf(ficlog,"Gaining to use average direction of P0 P%d instead of biggest increase direction :\n",n,ibig); |
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#ifdef DEBUG |
#ifdef DEBUG |
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printf("Direction changed last moved %d in place of ibig=%d, new last is the average:\n",n,ibig); |
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fprintf(ficlog,"Direction changed last moved %d in place of ibig=%d, new last is the average:\n",n,ibig); |
for(j=1;j<=n;j++){ |
for(j=1;j<=n;j++){ |
printf(" %.12e",xit[j]); |
printf(" %.12e",xit[j]); |
fprintf(ficlog," %.12e",xit[j]); |
fprintf(ficlog," %.12e",xit[j]); |
Line 1577 double **pmij(double **ps, double *cov,
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Line 1596 double **pmij(double **ps, double *cov,
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*/ |
*/ |
double s1, lnpijopii; |
double s1, lnpijopii; |
/*double t34;*/ |
/*double t34;*/ |
int i,j,j1, nc, ii, jj; |
int i,j, nc, ii, jj; |
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for(i=1; i<= nlstate; i++){ |
for(i=1; i<= nlstate; i++){ |
for(j=1; j<i;j++){ |
for(j=1; j<i;j++){ |
Line 2140 void likelione(FILE *ficres,double p[],
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Line 2159 void likelione(FILE *ficres,double p[],
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void mlikeli(FILE *ficres,double p[], int npar, int ncovmodel, int nlstate, double ftol, double (*func)(double [])) |
void mlikeli(FILE *ficres,double p[], int npar, int ncovmodel, int nlstate, double ftol, double (*func)(double [])) |
{ |
{ |
int i,j, iter; |
int i,j, iter=0; |
double **xi; |
double **xi; |
double fret; |
double fret; |
double fretone; /* Only one call to likelihood */ |
double fretone; /* Only one call to likelihood */ |
Line 2216 void hesscov(double **matcov, double p[]
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Line 2235 void hesscov(double **matcov, double p[]
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{ |
{ |
double **a,**y,*x,pd; |
double **a,**y,*x,pd; |
double **hess; |
double **hess; |
int i, j,jk; |
int i, j; |
int *indx; |
int *indx; |
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double hessii(double p[], double delta, int theta, double delti[],double (*func)(double []),int npar); |
double hessii(double p[], double delta, int theta, double delti[],double (*func)(double []),int npar); |
Line 2350 double hessii(double x[], double delta,
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Line 2369 double hessii(double x[], double delta,
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k=kmax; |
k=kmax; |
} |
} |
else if((k1 >khi/nkhif) || (k2 >khi/nkhif)){ /* Keeps lastvalue before 3.84/2 KHI2 5% 1d.f. */ |
else if((k1 >khi/nkhif) || (k2 >khi/nkhif)){ /* Keeps lastvalue before 3.84/2 KHI2 5% 1d.f. */ |
k=kmax; l=lmax*10.; |
k=kmax; l=lmax*10; |
} |
} |
else if((k1 >khi/nkhi) || (k2 >khi/nkhi)){ |
else if((k1 >khi/nkhi) || (k2 >khi/nkhi)){ |
delts=delt; |
delts=delt; |
Line 2365 double hessii(double x[], double delta,
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Line 2384 double hessii(double x[], double delta,
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double hessij( double x[], double delti[], int thetai,int thetaj,double (*func)(double []),int npar) |
double hessij( double x[], double delti[], int thetai,int thetaj,double (*func)(double []),int npar) |
{ |
{ |
int i; |
int i; |
int l=1, l1, lmax=20; |
int l=1, lmax=20; |
double k1,k2,k3,k4,res,fx; |
double k1,k2,k3,k4,res,fx; |
double p2[MAXPARM+1]; |
double p2[MAXPARM+1]; |
int k; |
int k; |
Line 2480 void pstamp(FILE *fichier)
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Line 2499 void pstamp(FILE *fichier)
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void freqsummary(char fileres[], int iagemin, int iagemax, int **s, double **agev, int nlstate, int imx, int *Tvaraff, int **nbcode, int *ncodemax,double **mint,double **anint, char strstart[]) |
void freqsummary(char fileres[], int iagemin, int iagemax, int **s, double **agev, int nlstate, int imx, int *Tvaraff, int **nbcode, int *ncodemax,double **mint,double **anint, char strstart[]) |
{ /* Some frequencies */ |
{ /* Some frequencies */ |
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int i, m, jk, k1,i1, j1, bool, z1,j; |
int i, m, jk, j1, bool, z1,j; |
int first; |
int first; |
double ***freq; /* Frequencies */ |
double ***freq; /* Frequencies */ |
double *pp, **prop; |
double *pp, **prop; |
Line 2661 void prevalence(double ***probs, double
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Line 2680 void prevalence(double ***probs, double
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We still use firstpass and lastpass as another selection. |
We still use firstpass and lastpass as another selection. |
*/ |
*/ |
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int i, m, jk, k1, i1, j1, bool, z1,j; |
int i, m, jk, j1, bool, z1,j; |
double ***freq; /* Frequencies */ |
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double *pp, **prop; |
double **prop; |
double pos,posprop; |
double posprop; |
double y2; /* in fractional years */ |
double y2; /* in fractional years */ |
int iagemin, iagemax; |
int iagemin, iagemax; |
int first; /** to stop verbosity which is redirected to log file */ |
int first; /** to stop verbosity which is redirected to log file */ |
Line 2755 void concatwav(int wav[], int **dh, int
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Line 2774 void concatwav(int wav[], int **dh, int
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int j, k=0,jk, ju, jl; |
int j, k=0,jk, ju, jl; |
double sum=0.; |
double sum=0.; |
first=0; |
first=0; |
jmin=1e+5; |
jmin=100000; |
jmax=-1; |
jmax=-1; |
jmean=0.; |
jmean=0.; |
for(i=1; i<=imx; i++){ |
for(i=1; i<=imx; i++){ |
Line 2995 void evsij(double ***eij, double x[], in
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Line 3014 void evsij(double ***eij, double x[], in
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{ |
{ |
/* Health expectancies, no variances */ |
/* Health expectancies, no variances */ |
int i, j, nhstepm, hstepm, h, nstepm, k, cptj, cptj2, i2, j2; |
int i, j, nhstepm, hstepm, h, nstepm; |
int nhstepma, nstepma; /* Decreasing with age */ |
int nhstepma, nstepma; /* Decreasing with age */ |
double age, agelim, hf; |
double age, agelim, hf; |
double ***p3mat; |
double ***p3mat; |
Line 3317 void varevsij(char optionfilefiname[], d
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Line 3336 void varevsij(char optionfilefiname[], d
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double **dnewm,**doldm; |
double **dnewm,**doldm; |
double **dnewmp,**doldmp; |
double **dnewmp,**doldmp; |
int i, j, nhstepm, hstepm, h, nstepm ; |
int i, j, nhstepm, hstepm, h, nstepm ; |
int k, cptcode; |
int k; |
double *xp; |
double *xp; |
double **gp, **gm; /* for var eij */ |
double **gp, **gm; /* for var eij */ |
double ***gradg, ***trgradg; /*for var eij */ |
double ***gradg, ***trgradg; /*for var eij */ |
Line 3617 void varprevlim(char fileres[], double *
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Line 3636 void varprevlim(char fileres[], double *
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{ |
{ |
/* Variance of prevalence limit */ |
/* Variance of prevalence limit */ |
/* double **prevalim(double **prlim, int nlstate, double *xp, double age, double **oldm, double **savm,double ftolpl);*/ |
/* double **prevalim(double **prlim, int nlstate, double *xp, double age, double **oldm, double **savm,double ftolpl);*/ |
double **newm; |
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double **dnewm,**doldm; |
double **dnewm,**doldm; |
int i, j, nhstepm, hstepm; |
int i, j, nhstepm, hstepm; |
int k, cptcode; |
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double *xp; |
double *xp; |
double *gp, *gm; |
double *gp, *gm; |
double **gradg, **trgradg; |
double **gradg, **trgradg; |
Line 3699 void varprevlim(char fileres[], double *
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Line 3717 void varprevlim(char fileres[], double *
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/************ Variance of one-step probabilities ******************/ |
/************ Variance of one-step probabilities ******************/ |
void varprob(char optionfilefiname[], double **matcov, double x[], double delti[], int nlstate, double bage, double fage, int ij, int *Tvar, int **nbcode, int *ncodemax, char strstart[]) |
void varprob(char optionfilefiname[], double **matcov, double x[], double delti[], int nlstate, double bage, double fage, int ij, int *Tvar, int **nbcode, int *ncodemax, char strstart[]) |
{ |
{ |
int i, j=0, i1, k1, l1, t, tj; |
int i, j=0, k1, l1, tj; |
int k2, l2, j1, z1; |
int k2, l2, j1, z1; |
int k=0,l, cptcode; |
int k=0, l; |
int first=1, first1, first2; |
int first=1, first1, first2; |
double cv12, mu1, mu2, lc1, lc2, v12, v21, v11, v22,v1,v2, c12, tnalp; |
double cv12, mu1, mu2, lc1, lc2, v12, v21, v11, v22,v1,v2, c12, tnalp; |
double **dnewm,**doldm; |
double **dnewm,**doldm; |
Line 3709 void varprob(char optionfilefiname[], do
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Line 3727 void varprob(char optionfilefiname[], do
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double *gp, *gm; |
double *gp, *gm; |
double **gradg, **trgradg; |
double **gradg, **trgradg; |
double **mu; |
double **mu; |
double age,agelim, cov[NCOVMAX+1]; |
double age, cov[NCOVMAX+1]; |
double std=2.0; /* Number of standard deviation wide of confidence ellipsoids */ |
double std=2.0; /* Number of standard deviation wide of confidence ellipsoids */ |
int theta; |
int theta; |
char fileresprob[FILENAMELENGTH]; |
char fileresprob[FILENAMELENGTH]; |
Line 4081 fprintf(fichtm," \n<ul><li><b>Graphs</b>
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Line 4099 fprintf(fichtm," \n<ul><li><b>Graphs</b>
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<img src=\"%s%d_2.png\">",stepm,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1); |
<img src=\"%s%d_2.png\">",stepm,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1); |
/* Period (stable) prevalence in each health state */ |
/* Period (stable) prevalence in each health state */ |
for(cpt=1; cpt<=nlstate;cpt++){ |
for(cpt=1; cpt<=nlstate;cpt++){ |
fprintf(fichtm,"<br>- Convergence from each state (1 to %d) to period (stable) prevalence in state %d <a href=\"%s%d_%d.png\">%s%d_%d.png</a><br> \ |
fprintf(fichtm,"<br>- Convergence to period (stable) prevalence in state %d. Or probability to be in state %d being in state (1 to %d) at different ages. <a href=\"%s%d_%d.png\">%s%d_%d.png</a><br> \ |
<img src=\"%s%d_%d.png\">",nlstate, cpt, subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1); |
<img src=\"%s%d_%d.png\">", cpt, cpt, nlstate, subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1); |
} |
} |
for(cpt=1; cpt<=nlstate;cpt++) { |
for(cpt=1; cpt<=nlstate;cpt++) { |
fprintf(fichtm,"\n<br>- Life expectancy by health state (%d) at initial age and its decomposition into health expectancies in each alive state (1 to %d) : <a href=\"%s%d%d.png\">%s%d%d.png</a> <br> \ |
fprintf(fichtm,"\n<br>- Life expectancy by health state (%d) at initial age and its decomposition into health expectancies in each alive state (1 to %d) : <a href=\"%s%d%d.png\">%s%d%d.png</a> <br> \ |
Line 4167 true period expectancies (those weighted
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Line 4185 true period expectancies (those weighted
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void printinggnuplot(char fileres[], char optionfilefiname[], double ageminpar, double agemaxpar, double fage , char pathc[], double p[]){ |
void printinggnuplot(char fileres[], char optionfilefiname[], double ageminpar, double agemaxpar, double fage , char pathc[], double p[]){ |
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char dirfileres[132],optfileres[132]; |
char dirfileres[132],optfileres[132]; |
int m0,cpt=0,k1=0,i=0,k=0,j=0,jk=0,k2=0,k3=0,ij=0,l=0; |
int cpt=0,k1=0,i=0,k=0,j=0,jk=0,k2=0,k3=0,ij=0,l=0; |
int ng=0; |
int ng=0; |
/* if((ficgp=fopen(optionfilegnuplot,"a"))==NULL) { */ |
/* if((ficgp=fopen(optionfilegnuplot,"a"))==NULL) { */ |
/* printf("Problem with file %s",optionfilegnuplot); */ |
/* printf("Problem with file %s",optionfilegnuplot); */ |
Line 4353 plot [%.f:%.f] ", ageminpar, agemaxpar)
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Line 4371 plot [%.f:%.f] ", ageminpar, agemaxpar)
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} /* end k2 */ |
} /* end k2 */ |
} /* end jk */ |
} /* end jk */ |
} /* end ng */ |
} /* end ng */ |
avoid: |
/* avoid: */ |
fflush(ficgp); |
fflush(ficgp); |
} /* end gnuplot */ |
} /* end gnuplot */ |
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Line 4407 prevforecast(char fileres[], double anpr
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Line 4425 prevforecast(char fileres[], double anpr
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dateprev1 dateprev2 range of dates during which prevalence is computed |
dateprev1 dateprev2 range of dates during which prevalence is computed |
anproj2 year of en of projection (same day and month as proj1). |
anproj2 year of en of projection (same day and month as proj1). |
*/ |
*/ |
int yearp, stepsize, hstepm, nhstepm, j, k, c, cptcod, i, h, i1; |
int yearp, stepsize, hstepm, nhstepm, j, k, cptcod, i, h, i1; |
int *popage; |
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double agec; /* generic age */ |
double agec; /* generic age */ |
double agelim, ppij, yp,yp1,yp2,jprojmean,mprojmean,anprojmean; |
double agelim, ppij, yp,yp1,yp2,jprojmean,mprojmean,anprojmean; |
double *popeffectif,*popcount; |
double *popeffectif,*popcount; |
Line 4702 void prwizard(int ncovmodel, int nlstate
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Line 4719 void prwizard(int ncovmodel, int nlstate
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/* Wizard to print covariance matrix template */ |
/* Wizard to print covariance matrix template */ |
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char ca[32], cb[32], cc[32]; |
char ca[32], cb[32]; |
int i,j, k, l, li, lj, lk, ll, jj, npar, itimes; |
int i,j, k, li, lj, lk, ll, jj, npar, itimes; |
int numlinepar; |
int numlinepar; |
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printf("# Parameters nlstate*nlstate*ncov a12*1 + b12 * age + ...\n"); |
printf("# Parameters nlstate*nlstate*ncov a12*1 + b12 * age + ...\n"); |
Line 4924 fprintf(fichtm,"<ul><li><h4>Life table</
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Line 4941 fprintf(fichtm,"<ul><li><h4>Life table</
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void printinggnuplotmort(char fileres[], char optionfilefiname[], double ageminpar, double agemaxpar, double fage , char pathc[], double p[]){ |
void printinggnuplotmort(char fileres[], char optionfilefiname[], double ageminpar, double agemaxpar, double fage , char pathc[], double p[]){ |
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char dirfileres[132],optfileres[132]; |
char dirfileres[132],optfileres[132]; |
int m,cpt,k1,i,k,j,jk,k2,k3,ij,l; |
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int ng; |
int ng; |
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Line 4949 int readdata(char datafile[], int firsto
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Line 4966 int readdata(char datafile[], int firsto
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/*-------- data file ----------*/ |
/*-------- data file ----------*/ |
FILE *fic; |
FILE *fic; |
char dummy[]=" "; |
char dummy[]=" "; |
int i, j, n; |
int i=0, j=0, n=0; |
int linei, month, year,iout; |
int linei, month, year,iout; |
char line[MAXLINE], linetmp[MAXLINE]; |
char line[MAXLINE], linetmp[MAXLINE]; |
char stra[80], strb[80]; |
char stra[MAXLINE], strb[MAXLINE]; |
char *stratrunc; |
char *stratrunc; |
int lstra; |
int lstra; |
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Line 4980 int readdata(char datafile[], int firsto
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Line 4997 int readdata(char datafile[], int firsto
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continue; |
continue; |
} |
} |
trimbb(linetmp,line); /* Trims multiple blanks in line */ |
trimbb(linetmp,line); /* Trims multiple blanks in line */ |
for (j=0; line[j]!='\0';j++){ |
strcpy(line, linetmp); |
line[j]=linetmp[j]; |
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} |
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for (j=maxwav;j>=1;j--){ |
for (j=maxwav;j>=1;j--){ |
Line 5121 int readdata(char datafile[], int firsto
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Line 5136 int readdata(char datafile[], int firsto
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fclose(fic); |
fclose(fic); |
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return (0); |
return (0); |
endread: |
/* endread: */ |
printf("Exiting readdata: "); |
printf("Exiting readdata: "); |
fclose(fic); |
fclose(fic); |
return (1); |
return (1); |
Line 5152 int decodemodel ( char model[], int last
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Line 5167 int decodemodel ( char model[], int last
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*/ |
*/ |
{ |
{ |
int i, j, k, ks; |
int i, j, k, ks; |
int i1, j1, k1, k2; |
int j1, k1, k2; |
char modelsav[80]; |
char modelsav[80]; |
char stra[80], strb[80], strc[80], strd[80],stre[80]; |
char stra[80], strb[80], strc[80], strd[80],stre[80]; |
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Line 5301 int decodemodel ( char model[], int last
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Line 5316 int decodemodel ( char model[], int last
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return (0); /* with covar[new additional covariate if product] and Tage if age */ |
return (0); /* with covar[new additional covariate if product] and Tage if age */ |
endread: |
/*endread:*/ |
printf("Exiting decodemodel: "); |
printf("Exiting decodemodel: "); |
return (1); |
return (1); |
} |
} |
Line 5398 calandcheckages(int imx, int maxwav, dou
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Line 5413 calandcheckages(int imx, int maxwav, dou
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fprintf(ficlog,"Total number of individuals= %d, Agemin = %.2f, Agemax= %.2f\n\n", imx, *agemin, *agemax); |
fprintf(ficlog,"Total number of individuals= %d, Agemin = %.2f, Agemax= %.2f\n\n", imx, *agemin, *agemax); |
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return (0); |
return (0); |
endread: |
/* endread:*/ |
printf("Exiting calandcheckages: "); |
printf("Exiting calandcheckages: "); |
return (1); |
return (1); |
} |
} |
Line 5418 int main(int argc, char *argv[])
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Line 5433 int main(int argc, char *argv[])
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double ssval; |
double ssval; |
#endif |
#endif |
int movingaverage(double ***probs, double bage,double fage, double ***mobaverage, int mobilav); |
int movingaverage(double ***probs, double bage,double fage, double ***mobaverage, int mobilav); |
int i,j, k, n=MAXN,iter,m,size=100,cptcode, cptcod; |
int i,j, k, n=MAXN,iter=0,m,size=100, cptcod; |
int linei, month, year,iout; |
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int jj, ll, li, lj, lk, imk; |
int jj, ll, li, lj, lk; |
int numlinepar=0; /* Current linenumber of parameter file */ |
int numlinepar=0; /* Current linenumber of parameter file */ |
int itimes; |
int itimes; |
int NDIM=2; |
int NDIM=2; |
int vpopbased=0; |
int vpopbased=0; |
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char ca[32], cb[32], cc[32]; |
char ca[32], cb[32]; |
/* FILE *fichtm; *//* Html File */ |
/* FILE *fichtm; *//* Html File */ |
/* FILE *ficgp;*/ /*Gnuplot File */ |
/* FILE *ficgp;*/ /*Gnuplot File */ |
struct stat info; |
struct stat info; |
double agedeb, agefin,hf; |
double agedeb; |
double ageminpar=1.e20,agemin=1.e20, agemaxpar=-1.e20, agemax=-1.e20; |
double ageminpar=1.e20,agemin=1.e20, agemaxpar=-1.e20, agemax=-1.e20; |
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double fret; |
double fret; |
double **xi,tmp,delta; |
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double dum; /* Dummy variable */ |
double dum; /* Dummy variable */ |
double ***p3mat; |
double ***p3mat; |
double ***mobaverage; |
double ***mobaverage; |
int *indx; |
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char line[MAXLINE], linepar[MAXLINE]; |
char line[MAXLINE]; |
char path[MAXLINE],pathc[MAXLINE],pathcd[MAXLINE],pathtot[MAXLINE],model[MAXLINE]; |
char path[MAXLINE],pathc[MAXLINE],pathcd[MAXLINE],pathtot[MAXLINE],model[MAXLINE]; |
char pathr[MAXLINE], pathimach[MAXLINE]; |
char pathr[MAXLINE], pathimach[MAXLINE]; |
char **bp, *tok, *val; /* pathtot */ |
char *tok, *val; /* pathtot */ |
int firstobs=1, lastobs=10; |
int firstobs=1, lastobs=10; |
int sdeb, sfin; /* Status at beginning and end */ |
int c, h , cpt; |
int c, h , cpt,l; |
int jl; |
int ju,jl, mi; |
int i1, j1, jk, stepsize; |
int i1,j1, jk,aa,bb, stepsize, ij; |
int *tab; |
int jnais,jdc,jint4,jint1,jint2,jint3,*tab; |
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int mobilavproj=0 , prevfcast=0 ; /* moving average of prev, If prevfcast=1 prevalence projection */ |
int mobilavproj=0 , prevfcast=0 ; /* moving average of prev, If prevfcast=1 prevalence projection */ |
int mobilav=0,popforecast=0; |
int mobilav=0,popforecast=0; |
int hstepm, nhstepm; |
int hstepm, nhstepm; |
Line 5458 int main(int argc, char *argv[])
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Line 5470 int main(int argc, char *argv[])
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double jprev1=1, mprev1=1,anprev1=2000,jprev2=1, mprev2=1,anprev2=2000; |
double jprev1=1, mprev1=1,anprev1=2000,jprev2=1, mprev2=1,anprev2=2000; |
double jpyram=1, mpyram=1,anpyram=2000,jpyram1=1, mpyram1=1,anpyram1=2000; |
double jpyram=1, mpyram=1,anpyram=2000,jpyram1=1, mpyram1=1,anpyram1=2000; |
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double bage, fage, age, agelim, agebase; |
double bage=0, fage=110, age, agelim, agebase; |
double ftolpl=FTOL; |
double ftolpl=FTOL; |
double **prlim; |
double **prlim; |
double ***param; /* Matrix of parameters */ |
double ***param; /* Matrix of parameters */ |
Line 5469 int main(int argc, char *argv[])
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Line 5481 int main(int argc, char *argv[])
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double ***eij, ***vareij; |
double ***eij, ***vareij; |
double **varpl; /* Variances of prevalence limits by age */ |
double **varpl; /* Variances of prevalence limits by age */ |
double *epj, vepp; |
double *epj, vepp; |
double kk1, kk2; |
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double dateprev1, dateprev2,jproj1=1,mproj1=1,anproj1=2000,jproj2=1,mproj2=1,anproj2=2000; |
double dateprev1, dateprev2,jproj1=1,mproj1=1,anproj1=2000,jproj2=1,mproj2=1,anproj2=2000; |
double **ximort; |
double **ximort; |
char *alph[]={"a","a","b","c","d","e"}, str[4]="1234"; |
char *alph[]={"a","a","b","c","d","e"}, str[4]="1234"; |
int *dcwave; |
int *dcwave; |
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char z[1]="c", occ; |
char z[1]="c"; |
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/*char *strt;*/ |
/*char *strt;*/ |
char strtend[80]; |
char strtend[80]; |
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long total_usecs; |
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/* setlocale (LC_ALL, ""); */ |
/* setlocale (LC_ALL, ""); */ |
/* bindtextdomain (PACKAGE, LOCALEDIR); */ |
/* bindtextdomain (PACKAGE, LOCALEDIR); */ |
/* textdomain (PACKAGE); */ |
/* textdomain (PACKAGE); */ |
Line 5752 run imach with mle=-1 to get a correct t
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Line 5763 run imach with mle=-1 to get a correct t
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for(i=1; i <=nlstate; i++){ |
for(i=1; i <=nlstate; i++){ |
for(j=1; j <=nlstate+ndeath-1; j++){ |
for(j=1; j <=nlstate+ndeath-1; j++){ |
fscanf(ficpar,"%1d%1d",&i1,&j1); |
fscanf(ficpar,"%1d%1d",&i1,&j1); |
if ((i1-i)*(j1-j)!=0){ |
if ( (i1-i) * (j1-j) != 0){ |
printf("Error in line parameters number %d, %1d%1d instead of %1d%1d \n",numlinepar, i,j, i1, j1); |
printf("Error in line parameters number %d, %1d%1d instead of %1d%1d \n",numlinepar, i,j, i1, j1); |
exit(1); |
exit(1); |
} |
} |
Line 6787 Interval (in months) between two waves:
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Line 6798 Interval (in months) between two waves:
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if (mobilav!=0) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX); |
if (mobilav!=0) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX); |
free_ma3x(probs,1,AGESUP,1,NCOVMAX, 1,NCOVMAX); |
free_ma3x(probs,1,AGESUP,1,NCOVMAX, 1,NCOVMAX); |
} /* mle==-3 arrives here for freeing */ |
} /* mle==-3 arrives here for freeing */ |
endfree: |
/* endfree:*/ |
free_matrix(prlim,1,nlstate,1,nlstate); /*here or after loop ? */ |
free_matrix(prlim,1,nlstate,1,nlstate); /*here or after loop ? */ |
free_matrix(pmmij,1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(pmmij,1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(oldms, 1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(oldms, 1,nlstate+ndeath,1,nlstate+ndeath); |