version 1.183, 2015/03/10 20:34:32
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version 1.185, 2015/03/11 13:26:42
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.185 2015/03/11 13:26:42 brouard |
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Summary: Inclusion of compile and links command line for Intel Compiler |
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Revision 1.184 2015/03/11 11:52:39 brouard |
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Summary: Back from Windows 8. Intel Compiler |
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Revision 1.183 2015/03/10 20:34:32 brouard |
Revision 1.183 2015/03/10 20:34:32 brouard |
Summary: 0.98q0, trying with directest, mnbrak fixed |
Summary: 0.98q0, trying with directest, mnbrak fixed |
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Line 574
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Line 580
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#define POWELL /* Instead of NLOPT */ |
#define POWELL /* Instead of NLOPT */ |
/* #define POWELLORIGINAL */ /* Don't use Directest to decide new direction but original Powell test */ |
/* #define POWELLORIGINAL */ /* Don't use Directest to decide new direction but original Powell test */ |
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/* #define MNBRAKORIGINAL */ /* Don't use mnbrak fix */ |
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#include <math.h> |
#include <math.h> |
#include <stdio.h> |
#include <stdio.h> |
Line 834 static int split( char *path, char *dirc
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Line 841 static int split( char *path, char *dirc
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printf("Warning you should use %s as a separator\n",DIRSEPARATOR);*/ |
printf("Warning you should use %s as a separator\n",DIRSEPARATOR);*/ |
/* get current working directory */ |
/* get current working directory */ |
/* extern char* getcwd ( char *buf , int len);*/ |
/* extern char* getcwd ( char *buf , int len);*/ |
if ( getcwd( dirc, FILENAME_MAX ) == NULL ) { |
#ifdef WIN32 |
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if (_getcwd( dirc, FILENAME_MAX ) == NULL ) { |
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#else |
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if (getcwd(dirc, FILENAME_MAX) == NULL) { |
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#endif |
return( GLOCK_ERROR_GETCWD ); |
return( GLOCK_ERROR_GETCWD ); |
} |
} |
/* got dirc from getcwd*/ |
/* got dirc from getcwd*/ |
Line 1354 values at the three points, fa, fb , and
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Line 1365 values at the three points, fa, fb , and
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(*cx=10.098840694817, *fc=298946.631474258087), (*u=9.852501168332, fu=298948.773013752128, fparabu=298945.434711494134) */ |
(*cx=10.098840694817, *fc=298946.631474258087), (*u=9.852501168332, fu=298948.773013752128, fparabu=298945.434711494134) */ |
/* In that case, there is no bracket in the output! Routine is wrong with many consequences.*/ |
/* In that case, there is no bracket in the output! Routine is wrong with many consequences.*/ |
#endif |
#endif |
#ifdef MNBRAKORI |
#ifdef MNBRAKORIGINAL |
#else |
#else |
if (fu > *fc) { |
if (fu > *fc) { |
#ifdef DEBUG |
#ifdef DEBUG |
Line 1635 void powell(double p[], double **xi, int
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Line 1646 void powell(double p[], double **xi, int
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if (t < 0.0) { /* Then we use it for new direction */ |
if (t < 0.0) { /* Then we use it for new direction */ |
#else |
#else |
if (directest*t < 0.0) { /* Contradiction between both tests */ |
if (directest*t < 0.0) { /* Contradiction between both tests */ |
printf("directest= %.12lf, t= %.12lf, f1= %.12lf,f2= %.12lf,f3= %.12lf, del= %.12lf\n",directest, t, fp,(*fret),fptt); |
printf("directest= %.12lf, t= %.12lf, f1= %.12lf,f2= %.12lf,f3= %.12lf, del= %.12lf\n",directest, t, fp,(*fret),fptt,del); |
printf("f1-2f2+f3= %.12lf, f1-f2-del= %.12lf, f1-f3= %.12lf\n",fp-2.0*(*fret)+fptt, fp -(*fret) -del, fp-fptt); |
printf("f1-2f2+f3= %.12lf, f1-f2-del= %.12lf, f1-f3= %.12lf\n",fp-2.0*(*fret)+fptt, fp -(*fret) -del, fp-fptt); |
fprintf(ficlog,"directest= %.12lf, t= %.12lf, f1= %.12lf,f2= %.12lf,f3= %.12lf, del= %.12lf\n",directest, t, fp,(*fret),fptt); |
fprintf(ficlog,"directest= %.12lf, t= %.12lf, f1= %.12lf,f2= %.12lf,f3= %.12lf, del= %.12lf\n",directest, t, fp,(*fret),fptt, del); |
fprintf(ficlog,"f1-2f2+f3= %.12lf, f1-f2-del= %.12lf, f1-f3= %.12lf\n",fp-2.0*(*fret)+fptt, fp -(*fret) -del, fp-fptt); |
fprintf(ficlog,"f1-2f2+f3= %.12lf, f1-f2-del= %.12lf, f1-f3= %.12lf\n",fp-2.0*(*fret)+fptt, fp -(*fret) -del, fp-fptt); |
} |
} |
if (directest < 0.0) { /* Then we use it for new direction */ |
if (directest < 0.0) { /* Then we use it for new direction */ |
Line 5638 BOOL IsWow64()
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Line 5649 BOOL IsWow64()
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void syscompilerinfo() |
void syscompilerinfo() |
{ |
{ |
/* #include "syscompilerinfo.h"*/ |
/* #include "syscompilerinfo.h"*/ |
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/* command line Intel compiler 32bit windows, XP compatible:*/ |
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/* /GS /W3 /Gy |
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/Zc:wchar_t /Zi /O2 /Fd"Release\vc120.pdb" /D "WIN32" /D "NDEBUG" /D |
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"_CONSOLE" /D "_LIB" /D "_USING_V110_SDK71_" /D "_UNICODE" /D |
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"UNICODE" /Qipo /Zc:forScope /Gd /Oi /MT /Fa"Release\" /EHsc /nologo |
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/Fo"Release\" /Qprof-dir "Release\" /Fp"Release\IMaCh.pch" |
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/* 64 bits */ |
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/* |
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/GS /W3 /Gy |
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/Zc:wchar_t /Zi /O2 /Fd"x64\Release\vc120.pdb" /D "WIN32" /D "NDEBUG" |
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/D "_CONSOLE" /D "_LIB" /D "_UNICODE" /D "UNICODE" /Qipo /Zc:forScope |
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/Oi /MD /Fa"x64\Release\" /EHsc /nologo /Fo"x64\Release\" /Qprof-dir |
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"x64\Release\" /Fp"x64\Release\IMaCh.pch" */ |
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/* Optimization are useless and O3 is slower than O2 */ |
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/* |
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/GS /W3 /Gy /Zc:wchar_t /Zi /O3 /Fd"x64\Release\vc120.pdb" /D "WIN32" |
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/D "NDEBUG" /D "_CONSOLE" /D "_LIB" /D "_UNICODE" /D "UNICODE" /Qipo |
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/Zc:forScope /Oi /MD /Fa"x64\Release\" /EHsc /nologo /Qparallel |
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/Fo"x64\Release\" /Qprof-dir "x64\Release\" /Fp"x64\Release\IMaCh.pch" |
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*/ |
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/* Link is $/ /* /OUT:"visual studio |
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2013\Projects\IMaCh\Release\IMaCh.exe" /MANIFEST /NXCOMPAT |
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/PDB:"visual studio |
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2013\Projects\IMaCh\Release\IMaCh.pdb" /DYNAMICBASE |
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"kernel32.lib" "user32.lib" "gdi32.lib" "winspool.lib" |
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"comdlg32.lib" "advapi32.lib" "shell32.lib" "ole32.lib" |
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"oleaut32.lib" "uuid.lib" "odbc32.lib" "odbccp32.lib" |
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/MACHINE:X86 /OPT:REF /SAFESEH /INCREMENTAL:NO |
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/SUBSYSTEM:CONSOLE",5.01" /MANIFESTUAC:"level='asInvoker' |
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uiAccess='false'" |
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/ManifestFile:"Release\IMaCh.exe.intermediate.manifest" /OPT:ICF |
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/NOLOGO /TLBID:1 |
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*/ |
#if defined __INTEL_COMPILER |
#if defined __INTEL_COMPILER |
#if defined(__GNUC__) |
#if defined(__GNUC__) |
struct utsname sysInfo; /* For Intel on Linux and OS/X */ |
struct utsname sysInfo; /* For Intel on Linux and OS/X */ |
Line 5827 int prevalence_limit(double *p, double *
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Line 5870 int prevalence_limit(double *p, double *
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} /* Age */ |
} /* Age */ |
/* was end of cptcod */ |
/* was end of cptcod */ |
} /* cptcov */ |
} /* cptcov */ |
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return 0; |
} |
} |
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int hPijx(double *p, int bage, int fage){ |
int hPijx(double *p, int bage, int fage){ |
Line 5896 int hPijx(double *p, int bage, int fage)
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Line 5940 int hPijx(double *p, int bage, int fage)
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} |
} |
/*}*/ |
/*}*/ |
} |
} |
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return 0; |
} |
} |
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Line 6006 int main(int argc, char *argv[])
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Line 6051 int main(int argc, char *argv[])
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nberr=0; /* Number of errors and warnings */ |
nberr=0; /* Number of errors and warnings */ |
nbwarn=0; |
nbwarn=0; |
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#ifdef WIN32 |
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_getcwd(pathcd, size); |
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#else |
getcwd(pathcd, size); |
getcwd(pathcd, size); |
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#endif |
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printf("\n%s\n%s",version,fullversion); |
printf("\n%s\n%s",version,fullversion); |
if(argc <=1){ |
if(argc <=1){ |
Line 6042 int main(int argc, char *argv[])
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Line 6091 int main(int argc, char *argv[])
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/* Split argv[1]=pathtot, parameter file name to get path, optionfile, extension and name */ |
/* Split argv[1]=pathtot, parameter file name to get path, optionfile, extension and name */ |
split(pathtot,path,optionfile,optionfilext,optionfilefiname); |
split(pathtot,path,optionfile,optionfilext,optionfilefiname); |
printf("\npathtot=%s,\npath=%s,\noptionfile=%s \noptionfilext=%s \noptionfilefiname=%s\n",pathtot,path,optionfile,optionfilext,optionfilefiname); |
printf("\npathtot=%s,\npath=%s,\noptionfile=%s \noptionfilext=%s \noptionfilefiname=%s\n",pathtot,path,optionfile,optionfilext,optionfilefiname); |
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#ifdef WIN32 |
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_chdir(path); /* Can be a relative path */ |
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if(_getcwd(pathcd,MAXLINE) > 0) /* So pathcd is the full path */ |
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#else |
chdir(path); /* Can be a relative path */ |
chdir(path); /* Can be a relative path */ |
if(getcwd(pathcd,MAXLINE) > 0) /* So pathcd is the full path */ |
if (getcwd(pathcd, MAXLINE) > 0) /* So pathcd is the full path */ |
printf("Current directory %s!\n",pathcd); |
#endif |
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printf("Current directory %s!\n",pathcd); |
strcpy(command,"mkdir "); |
strcpy(command,"mkdir "); |
strcat(command,optionfilefiname); |
strcat(command,optionfilefiname); |
if((outcmd=system(command)) != 0){ |
if((outcmd=system(command)) != 0){ |
Line 6544 Title=%s <br>Datafile=%s Firstpass=%d La
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Line 6598 Title=%s <br>Datafile=%s Firstpass=%d La
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strcpy(pathr,path); |
strcpy(pathr,path); |
strcat(pathr,optionfilefiname); |
strcat(pathr,optionfilefiname); |
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#ifdef WIN32 |
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_chdir(optionfilefiname); /* Move to directory named optionfile */ |
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#else |
chdir(optionfilefiname); /* Move to directory named optionfile */ |
chdir(optionfilefiname); /* Move to directory named optionfile */ |
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#endif |
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/* Calculates basic frequencies. Computes observed prevalence at single age |
/* Calculates basic frequencies. Computes observed prevalence at single age |
and prints on file fileres'p'. */ |
and prints on file fileres'p'. */ |
Line 7341 Interval (in months) between two waves:
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Line 7400 Interval (in months) between two waves:
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printf("Before Current directory %s!\n",pathcd); |
printf("Before Current directory %s!\n",pathcd); |
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#ifdef WIN32 |
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if (_chdir(pathcd) != 0) |
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printf("Can't move to directory %s!\n",path); |
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if(_getcwd(pathcd,MAXLINE) > 0) |
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#else |
if(chdir(pathcd) != 0) |
if(chdir(pathcd) != 0) |
printf("Can't move to directory %s!\n",path); |
printf("Can't move to directory %s!\n", path); |
if(getcwd(pathcd,MAXLINE) > 0) |
if (getcwd(pathcd, MAXLINE) > 0) |
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#endif |
printf("Current directory %s!\n",pathcd); |
printf("Current directory %s!\n",pathcd); |
/*strcat(plotcmd,CHARSEPARATOR);*/ |
/*strcat(plotcmd,CHARSEPARATOR);*/ |
sprintf(plotcmd,"gnuplot"); |
sprintf(plotcmd,"gnuplot"); |