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Diff for /imach/src/imach.c between versions 1.28 and 1.30

version 1.28, 2002/03/01 17:56:23 version 1.30, 2002/03/08 16:17:18
Line 1443  void  concatwav(int wav[], int **dh, int Line 1443  void  concatwav(int wav[], int **dh, int
           if (j >= jmax) jmax=j;            if (j >= jmax) jmax=j;
           if (j <= jmin) jmin=j;            if (j <= jmin) jmin=j;
           sum=sum+j;            sum=sum+j;
           /* if (j<10) printf("j=%d num=%d ",j,i); */            /*if (j<0) printf("j=%d num=%d \n",j,i); */
           }            }
         }          }
         else{          else{
Line 1451  void  concatwav(int wav[], int **dh, int Line 1451  void  concatwav(int wav[], int **dh, int
           k=k+1;            k=k+1;
           if (j >= jmax) jmax=j;            if (j >= jmax) jmax=j;
           else if (j <= jmin)jmin=j;            else if (j <= jmin)jmin=j;
           /*   if (j<10) printf("j=%d jmin=%d num=%d ",j,jmin,i); */            /*        if (j<10) printf("j=%d jmin=%d num=%d ",j,jmin,i); */
           sum=sum+j;            sum=sum+j;
         }          }
         jk= j/stepm;          jk= j/stepm;
Line 1546  void evsij(char fileres[], double ***eij Line 1546  void evsij(char fileres[], double ***eij
     /* nhstepm age range expressed in number of stepm */      /* nhstepm age range expressed in number of stepm */
     nhstepm=(int) rint((agelim-age)*YEARM/stepm);      nhstepm=(int) rint((agelim-age)*YEARM/stepm);
     /* Typically if 20 years = 20*12/6=40 stepm */      /* Typically if 20 years = 20*12/6=40 stepm */
     if (stepm >= YEARM) hstepm=1;      /*if (stepm >= YEARM) hstepm=1;*/
   hstepm=1;
     nhstepm = nhstepm/hstepm;/* Expressed in hstepm, typically 40/4=10 */      nhstepm = nhstepm/hstepm;/* Expressed in hstepm, typically 40/4=10 */
     p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);      p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);
     /* Computed by stepm unit matrices, product of hstepm matrices, stored      /* Computed by stepm unit matrices, product of hstepm matrices, stored
        in an array of nhstepm length: nhstepm=10, hstepm=4, stepm=6 months */         in an array of nhstepm length: nhstepm=10, hstepm=4, stepm=6 months */
     hpxij(p3mat,nhstepm,age,hstepm,x,nlstate,stepm,oldm, savm, ij);        hpxij(p3mat,nhstepm,age,hstepm,x,nlstate,stepm,oldm, savm, ij);  
   hf=stepm/YEARM;
   /*printf("stepm=%d nhstepm=%d hstepm=%d age=%lf ",stepm, nhstepm, hstepm, age);*/
     for(i=1; i<=nlstate;i++)      for(i=1; i<=nlstate;i++)
       for(j=1; j<=nlstate;j++)        for(j=1; j<=nlstate;j++)
         for (h=0, eij[i][j][(int)age]=0; h<=nhstepm; h++){          for (h=0, eij[i][j][(int)age]=0; h<=nhstepm-1; h++){
           eij[i][j][(int)age] +=p3mat[i][j][h];            eij[i][j][(int)age] +=hf*(p3mat[i][j][h]+p3mat[i][j][h+1])/2.0;
         }          }
         
     hf=1;      /* hf=1;
     if (stepm >= YEARM) hf=stepm/YEARM;         if (stepm >= YEARM) hf=stepm/YEARM;*/
     fprintf(ficreseij,"%.0f",age );  hf=stepm/YEARM;
    
       fprintf(ficreseij,"%3.0f",age );
     for(i=1; i<=nlstate;i++)      for(i=1; i<=nlstate;i++)
       for(j=1; j<=nlstate;j++){        for(j=1; j<=nlstate;j++){
         fprintf(ficreseij," %.4f", hf*eij[i][j][(int)age]);          fprintf(ficreseij," %9.4f", eij[i][j][(int)age]);
       }        }
     fprintf(ficreseij,"\n");      fprintf(ficreseij,"\n");
     free_ma3x(p3mat,1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);      free_ma3x(p3mat,1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);
Line 1882  fclose(ficresprob); Line 1885  fclose(ficresprob);
 }  }
   
 /******************* Printing html file ***********/  /******************* Printing html file ***********/
 void printinghtml(char fileres[], char title[], char datafile[], int firstpass, int lastpass, int stepm, int weightopt, char model[],int imx,int jmin, int jmax, double jmeanint,char optionfile[],char optionfilehtm[] ){  void printinghtml(char fileres[], char title[], char datafile[], int firstpass, int lastpass, int stepm, int weightopt, char model[],int imx,int jmin, int jmax, double jmeanint,char optionfile[],char optionfilehtm[],char rfileres[] ){
   int jj1, k1, i1, cpt;    int jj1, k1, i1, cpt;
   FILE *fichtm;    FILE *fichtm;
   /*char optionfilehtm[FILENAMELENGTH];*/    /*char optionfilehtm[FILENAMELENGTH];*/
Line 1893  void printinghtml(char fileres[], char t Line 1896  void printinghtml(char fileres[], char t
     printf("Problem with %s \n",optionfilehtm), exit(0);      printf("Problem with %s \n",optionfilehtm), exit(0);
   }    }
   
  fprintf(fichtm,"<body><ul> <font size=\"6\">Imach, Version 0.7 </font> <hr size=\"2\" color=\"#EC5E5E\">   fprintf(fichtm,"<body><ul> <font size=\"6\">Imach, Version 0.71 </font> <hr size=\"2\" color=\"#EC5E5E\">
 Title=%s <br>Datafile=%s Firstpass=%d Lastpass=%d Stepm=%d Weight=%d Model=%s<br>  Title=%s <br>Datafile=%s Firstpass=%d Lastpass=%d Stepm=%d Weight=%d Model=%s<br>
   
 Total number of observations=%d <br>  Total number of observations=%d <br>
Line 1911  Interval (in months) between two waves: Line 1914  Interval (in months) between two waves:
         - Standard deviation of stationary prevalences: <a href=\"vpl%s\">vpl%s</a> <br>          - Standard deviation of stationary prevalences: <a href=\"vpl%s\">vpl%s</a> <br>
         - Prevalences forecasting: <a href=\"f%s\">f%s</a> <br>          - Prevalences forecasting: <a href=\"f%s\">f%s</a> <br>
         - Population forecasting (if popforecast=1): <a href=\"pop%s\">pop%s</a> <br>          - Population forecasting (if popforecast=1): <a href=\"pop%s\">pop%s</a> <br>
         <br>",title,datafile,firstpass,lastpass,stepm, weightopt,model,imx,jmin,jmax,jmean,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres);          <br>",title,datafile,firstpass,lastpass,stepm, weightopt,model,imx,jmin,jmax,jmean,fileres,fileres,rfileres,rfileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres);
     
 fprintf(fichtm," <li>Graphs</li><p>");  fprintf(fichtm," <li>Graphs</li><p>");
   
Line 2424  int main(int argc, char *argv[]) Line 2427  int main(int argc, char *argv[])
   char optionfile[FILENAMELENGTH], datafile[FILENAMELENGTH],  filerespl[FILENAMELENGTH];    char optionfile[FILENAMELENGTH], datafile[FILENAMELENGTH],  filerespl[FILENAMELENGTH];
   char optionfilext[10], optionfilefiname[FILENAMELENGTH], optionfilehtm[FILENAMELENGTH], optionfilegnuplot[FILENAMELENGTH], plotcmd[FILENAMELENGTH];    char optionfilext[10], optionfilefiname[FILENAMELENGTH], optionfilehtm[FILENAMELENGTH], optionfilegnuplot[FILENAMELENGTH], plotcmd[FILENAMELENGTH];
     
   char fileres[FILENAMELENGTH], filerespij[FILENAMELENGTH], filereso[FILENAMELENGTH];    char fileres[FILENAMELENGTH], filerespij[FILENAMELENGTH], filereso[FILENAMELENGTH], rfileres[FILENAMELENGTH];
   
   char filerest[FILENAMELENGTH];    char filerest[FILENAMELENGTH];
   char fileregp[FILENAMELENGTH];    char fileregp[FILENAMELENGTH];
Line 2456  int main(int argc, char *argv[]) Line 2459  int main(int argc, char *argv[])
   double dateprev1, dateprev2,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2;    double dateprev1, dateprev2,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2;
     
   
   char version[80]="Imach version 0.7, February 2002, INED-EUROREVES ";    char version[80]="Imach version 0.71, February 2002, INED-EUROREVES ";
   char *alph[]={"a","a","b","c","d","e"}, str[4];    char *alph[]={"a","a","b","c","d","e"}, str[4];
   
   
Line 2624  while((c=getc(ficpar))=='#' && c!= EOF){ Line 2627  while((c=getc(ficpar))=='#' && c!= EOF){
   printf("\n");    printf("\n");
   
   
     /*-------- data file ----------*/      /*-------- Rewriting paramater file ----------*/
     if((ficres =fopen(fileres,"w"))==NULL) {       strcpy(rfileres,"r");    /* "Rparameterfile */
       printf("Problem with resultfile: %s\n", fileres);goto end;       strcat(rfileres,optionfilefiname);    /* Parameter file first name*/
        strcat(rfileres,".");    /* */
        strcat(rfileres,optionfilext);    /* Other files have txt extension */
       if((ficres =fopen(rfileres,"w"))==NULL) {
         printf("Problem writing new parameter file: %s\n", fileres);goto end;
     }      }
     fprintf(ficres,"#%s\n",version);      fprintf(ficres,"#%s\n",version);
         
       /*-------- data file ----------*/
     if((fic=fopen(datafile,"r"))==NULL)    {      if((fic=fopen(datafile,"r"))==NULL)    {
       printf("Problem with datafile: %s\n", datafile);goto end;        printf("Problem with datafile: %s\n", datafile);goto end;
     }      }
Line 2902  printf("Total number of individuals= %d, Line 2910  printf("Total number of individuals= %d,
     }      }
         
     /*--------- results files --------------*/      /*--------- results files --------------*/
     fprintf(ficres,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate, ndeath, maxwav, mle,weightopt,model);      fprintf(ficres,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle= 0 weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate, ndeath, maxwav, weightopt,model);
     
   
    jk=1;     jk=1;
Line 3057  while((c=getc(ficpar))=='#' && c!= EOF){ Line 3065  while((c=getc(ficpar))=='#' && c!= EOF){
   
 /*--------- index.htm --------*/  /*--------- index.htm --------*/
   
   printinghtml(fileres,title,datafile, firstpass, lastpass, stepm, weightopt,model,imx,jmin,jmax,jmean,optionfile,optionfilehtm);    printinghtml(fileres,title,datafile, firstpass, lastpass, stepm, weightopt,model,imx,jmin,jmax,jmean,optionfile,optionfilehtm,rfileres);
   
     
   /*--------------- Prevalence limit --------------*/    /*--------------- Prevalence limit --------------*/
Line 3160  while((c=getc(ficpar))=='#' && c!= EOF){ Line 3168  while((c=getc(ficpar))=='#' && c!= EOF){
   
   
   /*---------- Forecasting ------------------*/    /*---------- Forecasting ------------------*/
   if(stepm == 1) {    if((stepm == 1) && (model==".")){
     prevforecast(fileres, anproj1,mproj1,jproj1, agemin,agemax, dateprev1, dateprev2,mobilav, agedeb, fage, popforecast, popfile, anproj2,p, i1);      prevforecast(fileres, anproj1,mproj1,jproj1, agemin,agemax, dateprev1, dateprev2,mobilav, agedeb, fage, popforecast, popfile, anproj2,p, i1);
 if (popforecast==1) populforecast(fileres, anpyram,mpyram,jpyram, agemin,agemax, dateprev1, dateprev2,mobilav, agedeb, fage, popforecast, popfile, anpyram1,p, i1);  if (popforecast==1) populforecast(fileres, anpyram,mpyram,jpyram, agemin,agemax, dateprev1, dateprev2,mobilav, agedeb, fage, popforecast, popfile, anpyram1,p, i1);
     free_matrix(mint,1,maxwav,1,n);      free_matrix(mint,1,maxwav,1,n);
Removed from v.1.28  
changed lines
  Added in v.1.30

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